BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q9Y6H6
         (103 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2NDJ-A nrPDB                                                          216   2e-57
2K21-A nrPDB                                                           39   4e-04
2M0Q-A nrPDB                                                           33   0.021

>2NDJ-A nrPDB
          Length = 112

 Score =  216 bits (551), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 60
           METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
Sbjct: 10  METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 69

Query: 61  ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 103
           ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
Sbjct: 70  ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 112


>2K21-A nrPDB
          Length = 138

 Score = 39.3 bits (90), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 46 RRASLPGRDDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKN 98
          RR+   G      +Y+L V+  F      ++L Y RS+K++  +DP++VYI++
Sbjct: 41 RRSPRSGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIES 93


>2M0Q-A nrPDB
          Length = 123

 Score = 33.5 bits (75), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 40 DNQTEERRASLPGRD-DNSYMYILFVMFL---FAVTVGSLILGYTRSRKVDKRSDPYHVY 95
           N T E+ A     D +N Y  IL++M +   F+  + ++++   +S++ +  +DPYH Y
Sbjct: 28 QNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQY 87

Query: 96 I 96
          I
Sbjct: 88 I 88


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2NDJ-A nrPDB                                                          201   7e-53
2K21-A nrPDB                                                           95   5e-21

Sequences not found previously or not previously below threshold:

2M0Q-A nrPDB                                                           46   4e-06
1XTP-A nrPDB                                                           27   2.2  

>2NDJ-A nrPDB
          Length = 112

 Score =  201 bits (511), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 60
           METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
Sbjct: 10  METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 69

Query: 61  ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 103
           ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
Sbjct: 70  ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 112


>2K21-A nrPDB
          Length = 138

 Score = 95.5 bits (236), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 46 RRASLPGRDDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKN 98
          RR+   G      +Y+L V+  F      ++L Y RS+K++  +DP++VYI++
Sbjct: 41 RRSPRSGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIES 93


>2M0Q-A nrPDB
          Length = 123

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 26/38 (68%)

Query: 59 MYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYI 96
          +Y++ ++ +F+  + ++++   +S++ +  +DPYH YI
Sbjct: 51 LYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYI 88


>1XTP-A nrPDB
          Length = 254

 Score = 26.9 bits (58), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 34 GPGLGPDNQTEERRASLPGRDDNSYMY 60
          GPG  P  +   R   + GRD N   Y
Sbjct: 1  GPGSMPSKEASSRNLPISGRDTNGKTY 27


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.316    0.137    0.390 

Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,177,248
Number of Sequences: 36641
Number of extensions: 143571
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 10
length of query: 103
length of database: 10,336,785
effective HSP length: 70
effective length of query: 33
effective length of database: 7,771,915
effective search space: 256473195
effective search space used: 256473195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)