BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9Y657 (262 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2NS2-A nrPDB 494 e-140 6I8Y-A nrPDB 447 e-126 5A1H-A nrPDB 407 e-114 5LUG-A nrPDB 384 e-107 4UY4-A nrPDB 348 1e-96 2ZFD-A nrPDB 32 0.39 1UHN-A nrPDB 31 0.54 5GO3-A nrPDB 30 1.1 1YGA-A nrPDB 28 3.9 1ZVD-A nrPDB 27 9.3 >2NS2-A nrPDB Length = 242 Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/242 (98%), Positives = 239/242 (98%) Query: 21 GVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQV 80 G +MMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQV Sbjct: 1 GPLGSMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQV 60 Query: 81 PVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHM 140 PVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHM Sbjct: 61 PVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHM 120 Query: 141 FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSP 200 FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSP Sbjct: 121 FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSP 180 Query: 201 PAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK 260 PAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK Sbjct: 181 PAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK 240 Query: 261 TS 262 TS Sbjct: 241 TS 242 >6I8Y-A nrPDB Length = 222 Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/214 (100%), Positives = 214/214 (100%) Query: 49 PRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERV 108 PRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERV Sbjct: 2 PRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERV 61 Query: 109 SALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYI 168 SALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYI Sbjct: 62 SALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYI 121 Query: 169 TYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKR 228 TYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKR Sbjct: 122 TYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKR 181 Query: 229 TGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 262 TGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS Sbjct: 182 TGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 215 >5A1H-A nrPDB Length = 222 Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust. Identities = 190/214 (88%), Positives = 208/214 (97%) Query: 49 PRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERV 108 PR NIVGCRIQHGWK+G+ P+TQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLEL++DERV Sbjct: 2 PRGNIVGCRIQHGWKDGDEPLTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELHRDERV 61 Query: 109 SALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYI 168 S+LEVLP+RVA+SRISD HLA+ M+GKAVEH+FETE+GSK+EWRGMVLA+APVMNTWFYI Sbjct: 62 SSLEVLPNRVASSRISDTHLAEIMVGKAVEHIFETEEGSKNEWRGMVLAQAPVMNTWFYI 121 Query: 169 TYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKR 228 TYEKDPVLYMYQLLDDYK+GDLRI+ DSNDSP AEREPGEV+DSLVGKQVEYAK+DGSKR Sbjct: 122 TYEKDPVLYMYQLLDDYKDGDLRILQDSNDSPLAEREPGEVIDSLVGKQVEYAKDDGSKR 181 Query: 229 TGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 262 TGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS Sbjct: 182 TGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 215 >5LUG-A nrPDB Length = 222 Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust. Identities = 178/214 (83%), Positives = 197/214 (92%) Query: 49 PRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERV 108 PRRNIVGCRI HGWKEG+ P+TQWKGTVLDQVP+NPSLYL+KYDG DCVYGLEL++DERV Sbjct: 2 PRRNIVGCRISHGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERV 61 Query: 109 SALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYI 168 +L++L DRVA+S ISDA+LA+T+IGKAVEHMFE E GSKDEWRGMVLA+AP+M WFYI Sbjct: 62 LSLKILSDRVASSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYI 121 Query: 169 TYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKR 228 TYEKDPVLYMYQLLDDYKEGDLRIMP+S++SPP EREPG VVD L+GK VEY KEDGSKR Sbjct: 122 TYEKDPVLYMYQLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKR 181 Query: 229 TGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 262 GMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK S Sbjct: 182 IGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKKS 215 >4UY4-A nrPDB Length = 216 Score = 348 bits (894), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 171/216 (79%), Positives = 192/216 (88%), Gaps = 2/216 (0%) Query: 47 SQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDE 106 S RRNIVGCRIQHGWKEGN PV QWKGTVL+QV V P+LY+IKYDG D VYGLEL++D+ Sbjct: 1 SMTRRNIVGCRIQHGWKEGNEPVEQWKGTVLEQVSVKPTLYIIKYDGKDSVYGLELHRDK 60 Query: 107 RVSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWF 166 RV ALE+LP+RV T RI D+ LAD++IGKAVEH+FE E G+KDEW+GMVLARAPVM+TWF Sbjct: 61 RVLALEILPERVPTPRI-DSRLADSLIGKAVEHVFEGEHGTKDEWKGMVLARAPVMDTWF 119 Query: 167 YITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDS-PPAEREPGEVVDSLVGKQVEYAKEDG 225 YITYEKDPVLYMY LLDDYK+GDLRI+PDSN P AE+EPGEVVDSLVGKQVE+AK+DG Sbjct: 120 YITYEKDPVLYMYTLLDDYKDGDLRIIPDSNYYFPTAEQEPGEVVDSLVGKQVEHAKDDG 179 Query: 226 SKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKT 261 SKRTG+ IHQV AKPSVYFIKFDDD HIYVY LVKT Sbjct: 180 SKRTGIFIHQVVAKPSVYFIKFDDDIHIYVYGLVKT 215 >2ZFD-A nrPDB Length = 226 Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 20/102 (19%) Query: 78 DQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAV 137 D++ + LY +K GF + EV VAT S +L DT+I + Sbjct: 122 DKIHFSFQLYDLKQQGF-------------IERQEVKQMVVATLAESGMNLKDTVIEDII 168 Query: 138 EHMFETEDGS------KDEWRGMVLARAPVMNTWFYITYEKD 173 + FE D K+EWR +VL R P + + Y KD Sbjct: 169 DKTFEEADTKHDGKIDKEEWRSLVL-RHPSLLKNMTLQYLKD 209 >1UHN-A nrPDB Length = 189 Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 20/102 (19%) Query: 78 DQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAV 137 D++ + LY +K GF + EV VAT S +L DT+I + Sbjct: 91 DKIHFSFQLYDLKQQGF-------------IERQEVKQMVVATLAESGMNLKDTVIEDII 137 Query: 138 EHMFETEDGS------KDEWRGMVLARAPVMNTWFYITYEKD 173 + FE D K+EWR +VL R P + + Y KD Sbjct: 138 DKTFEEADTKHDGKIDKEEWRSLVL-RHPSLLKNMTLQYLKD 178 >5GO3-A nrPDB Length = 447 Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query: 92 DGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEW 151 D F+ G+ + E++ ++V+T++I HL+D+ + + ++E +D ++DE+ Sbjct: 50 DVFEEAKGIAKAVKKSALTFEIIQEKVSTTQIK--HLSDSEQREVAKLIYEMDDDARDEF 107 Query: 152 RGMV 155 G+ Sbjct: 108 LGLT 111 >1YGA-A nrPDB Length = 342 Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 26/90 (28%) Query: 94 FDCVYGLELNKD----ERVSALEVLPD------------RVATSRISDAHL--ADTMIGK 135 FDC + ++ NKD + VS +++P V+T+ + HL D + GK Sbjct: 239 FDCTFIIDANKDLKTTDSVSVNKLVPVFKAYHPESHIKFEVSTTEPT-VHLYTGDNLCGK 297 Query: 136 AVEHM-FETEDG------SKDEWRGMVLAR 158 V F + G ++DEWRG VL + Sbjct: 298 FVPRSGFAVQQGRYVDAINRDEWRGCVLLK 327 >1ZVD-A nrPDB Length = 380 Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 86 LYLIKYDGFDCVYGLELNKDERVSALEVLPDR-VATSRISDAHLADTMIGKAVEH 139 LYL+ ++ + YGL + + L++ PD V +S H ++G AV H Sbjct: 74 LYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFH 128 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2NS2-A nrPDB 484 e-137 6I8Y-A nrPDB 436 e-123 5A1H-A nrPDB 427 e-120 5LUG-A nrPDB 417 e-117 4UY4-A nrPDB 393 e-110 Sequences not found previously or not previously below threshold: 5GO3-A nrPDB 30 0.82 1ZVD-A nrPDB 30 1.3 5WU3-A nrPDB 27 6.4 5WU6-A nrPDB 27 6.8 CONVERGED! >2NS2-A nrPDB Length = 242 Score = 484 bits (1245), Expect = e-137, Method: Composition-based stats. Identities = 238/242 (98%), Positives = 239/242 (98%) Query: 21 GVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQV 80 G +MMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQV Sbjct: 1 GPLGSMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQV 60 Query: 81 PVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHM 140 PVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHM Sbjct: 61 PVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHM 120 Query: 141 FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSP 200 FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSP Sbjct: 121 FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSP 180 Query: 201 PAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK 260 PAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK Sbjct: 181 PAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK 240 Query: 261 TS 262 TS Sbjct: 241 TS 242 >6I8Y-A nrPDB Length = 222 Score = 436 bits (1122), Expect = e-123, Method: Composition-based stats. Identities = 214/215 (99%), Positives = 214/215 (99%) Query: 48 QPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDER 107 PRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDER Sbjct: 1 MPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDER 60 Query: 108 VSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFY 167 VSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFY Sbjct: 61 VSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFY 120 Query: 168 ITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSK 227 ITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSK Sbjct: 121 ITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSK 180 Query: 228 RTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 262 RTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS Sbjct: 181 RTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 215 >5A1H-A nrPDB Length = 222 Score = 427 bits (1097), Expect = e-120, Method: Composition-based stats. Identities = 190/215 (88%), Positives = 208/215 (96%) Query: 48 QPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDER 107 PR NIVGCRIQHGWK+G+ P+TQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLEL++DER Sbjct: 1 MPRGNIVGCRIQHGWKDGDEPLTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELHRDER 60 Query: 108 VSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFY 167 VS+LEVLP+RVA+SRISD HLA+ M+GKAVEH+FETE+GSK+EWRGMVLA+APVMNTWFY Sbjct: 61 VSSLEVLPNRVASSRISDTHLAEIMVGKAVEHIFETEEGSKNEWRGMVLAQAPVMNTWFY 120 Query: 168 ITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSK 227 ITYEKDPVLYMYQLLDDYK+GDLRI+ DSNDSP AEREPGEV+DSLVGKQVEYAK+DGSK Sbjct: 121 ITYEKDPVLYMYQLLDDYKDGDLRILQDSNDSPLAEREPGEVIDSLVGKQVEYAKDDGSK 180 Query: 228 RTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 262 RTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS Sbjct: 181 RTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 215 >5LUG-A nrPDB Length = 222 Score = 417 bits (1072), Expect = e-117, Method: Composition-based stats. Identities = 178/215 (82%), Positives = 197/215 (91%) Query: 48 QPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDER 107 PRRNIVGCRI HGWKEG+ P+TQWKGTVLDQVP+NPSLYL+KYDG DCVYGLEL++DER Sbjct: 1 MPRRNIVGCRISHGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDER 60 Query: 108 VSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFY 167 V +L++L DRVA+S ISDA+LA+T+IGKAVEHMFE E GSKDEWRGMVLA+AP+M WFY Sbjct: 61 VLSLKILSDRVASSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFY 120 Query: 168 ITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSK 227 ITYEKDPVLYMYQLLDDYKEGDLRIMP+S++SPP EREPG VVD L+GK VEY KEDGSK Sbjct: 121 ITYEKDPVLYMYQLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSK 180 Query: 228 RTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS 262 R GMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK S Sbjct: 181 RIGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKKS 215 >4UY4-A nrPDB Length = 216 Score = 393 bits (1009), Expect = e-110, Method: Composition-based stats. Identities = 171/216 (79%), Positives = 192/216 (88%), Gaps = 2/216 (0%) Query: 47 SQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDE 106 S RRNIVGCRIQHGWKEGN PV QWKGTVL+QV V P+LY+IKYDG D VYGLEL++D+ Sbjct: 1 SMTRRNIVGCRIQHGWKEGNEPVEQWKGTVLEQVSVKPTLYIIKYDGKDSVYGLELHRDK 60 Query: 107 RVSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWF 166 RV ALE+LP+RV T RI D+ LAD++IGKAVEH+FE E G+KDEW+GMVLARAPVM+TWF Sbjct: 61 RVLALEILPERVPTPRI-DSRLADSLIGKAVEHVFEGEHGTKDEWKGMVLARAPVMDTWF 119 Query: 167 YITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDS-PPAEREPGEVVDSLVGKQVEYAKEDG 225 YITYEKDPVLYMY LLDDYK+GDLRI+PDSN P AE+EPGEVVDSLVGKQVE+AK+DG Sbjct: 120 YITYEKDPVLYMYTLLDDYKDGDLRIIPDSNYYFPTAEQEPGEVVDSLVGKQVEHAKDDG 179 Query: 226 SKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKT 261 SKRTG+ IHQV AKPSVYFIKFDDD HIYVY LVKT Sbjct: 180 SKRTGIFIHQVVAKPSVYFIKFDDDIHIYVYGLVKT 215 >5GO3-A nrPDB Length = 447 Score = 30.4 bits (67), Expect = 0.82, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Query: 92 DGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEW 151 D F+ G+ + E++ ++V+T++I HL+D+ + + ++E +D ++DE+ Sbjct: 50 DVFEEAKGIAKAVKKSALTFEIIQEKVSTTQIK--HLSDSEQREVAKLIYEMDDDARDEF 107 Query: 152 RGM 154 G+ Sbjct: 108 LGL 110 >1ZVD-A nrPDB Length = 380 Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 86 LYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATS-RISDAHLADTMIGKAVEH 139 LYL+ ++ + YGL + + L++ PD +S H ++G AV H Sbjct: 74 LYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFH 128 >5WU3-A nrPDB Length = 573 Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 181 LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVG 215 LL+D +EGDL + ++P E+ G + LVG Sbjct: 102 LLEDREEGDLGKASELAETPKEEKAEGAAMLELVG 136 >5WU6-A nrPDB Length = 485 Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 181 LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVG 215 LL+D +EGDL + ++P E+ G + LVG Sbjct: 189 LLEDREEGDLGKASELAETPKEEKAEGAAMLELVG 223 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.140 0.425 Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,675,779 Number of Sequences: 36641 Number of extensions: 507324 Number of successful extensions: 1149 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 1071 Number of HSP's gapped (non-prelim): 25 length of query: 262 length of database: 10,336,785 effective HSP length: 95 effective length of query: 167 effective length of database: 6,855,890 effective search space: 1144933630 effective search space used: 1144933630 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 58 (27.0 bits)