BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9VC57 (541 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3X1D-A nrPDB 1131 0.0 3QOF-A nrPDB 545 e-155 5VGR-A nrPDB 489 e-138 6B9G-B nrPDB 419 e-117 1F5N-A nrPDB 56 4e-08 2D4H-A nrPDB 50 2e-06 5NKZ-A nrPDB 32 0.48 4LZI-A nrPDB 30 2.0 4NQ1-A nrPDB 30 2.6 3A8P-A nrPDB 30 2.6 >3X1D-A nrPDB Length = 541 Score = 1131 bits (2926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/541 (100%), Positives = 541/541 (100%) Query: 1 MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLR 60 MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLR Sbjct: 1 MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLR 60 Query: 61 YMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILL 120 YMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILL Sbjct: 61 YMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILL 120 Query: 121 DTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTG 180 DTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTG Sbjct: 121 DTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTG 180 Query: 181 KKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVA 240 KKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVA Sbjct: 181 KKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVA 240 Query: 241 CFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL 300 CFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL Sbjct: 241 CFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL 300 Query: 301 IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTA 360 IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTA Sbjct: 301 IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTA 360 Query: 361 HLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAA 420 HLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAA Sbjct: 361 HLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAA 420 Query: 421 RTPAVYFACAVIMYILSGIFGLVGLYTFANFCNLVMGVALLTLALWAYIRYSGELSDFGG 480 RTPAVYFACAVIMYILSGIFGLVGLYTFANFCNLVMGVALLTLALWAYIRYSGELSDFGG Sbjct: 421 RTPAVYFACAVIMYILSGIFGLVGLYTFANFCNLVMGVALLTLALWAYIRYSGELSDFGG 480 Query: 481 KLDDFATLLWEKFMRPIYHGCMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKR 540 KLDDFATLLWEKFMRPIYHGCMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKR Sbjct: 481 KLDDFATLLWEKFMRPIYHGCMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKR 540 Query: 541 S 541 S Sbjct: 541 S 541 >3QOF-A nrPDB Length = 459 Score = 545 bits (1405), Expect = e-155, Method: Compositional matrix adjust. Identities = 249/417 (59%), Positives = 336/417 (80%), Gaps = 4/417 (0%) Query: 6 VQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSK 65 VQV+ ++H+F L+E AL+ +L+ + V+D+ V VSVAGAFRKGKSFL+DF LRYMY++ Sbjct: 47 VQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQ 106 Query: 66 YVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGA 125 ++ DW+G ++PL GFSWRGGSER+TTGI +WS+IFL + P+G K+A++L+DTQG Sbjct: 107 ----ESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGT 162 Query: 126 FDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQ 185 FDSQST+RD ATVFALSTM+SS+Q+YNLSQN+QEDDLQHLQLFTEYGRLA+ +T KPFQ Sbjct: 163 FDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQ 222 Query: 186 RLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACFLMP 245 L FLVRDWSFPYE YGA GG K L++RL+VS QH ELQ++R+HI SCFT ++CFL+P Sbjct: 223 SLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLP 282 Query: 246 HPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDLIQYFQ 305 HPGL VATNP FDG+L++I EF +L+ L+P LL+P++L KEI+G ++ R L++YF+ Sbjct: 283 HPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFK 342 Query: 306 SYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQTE 365 +Y+ IY+G ELP PKSML ATAEAN+L AVA AK+ Y + MEE+CGG +P+L+ LQT+ Sbjct: 343 AYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTK 402 Query: 366 HLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAART 422 HL++K++++ F +KMGGEEF+ ++ +QLE +++E++ Y HN+SKNIF AART Sbjct: 403 HLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAART 459 >5VGR-A nrPDB Length = 431 Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust. Identities = 237/419 (56%), Positives = 319/419 (76%), Gaps = 1/419 (0%) Query: 3 GSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYM 62 G V+ ++H+F L+E AL+ +L++D ++D V VVSVAGAFRKGKSF+LDF LRY+ Sbjct: 5 GPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYL 64 Query: 63 YSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDT 122 YS+ ++WLG +PL GFSWRGGS+ +TTGI +WS++F + P G K+A++L+DT Sbjct: 65 YSQK-ESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMDT 123 Query: 123 QGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKK 182 QGAFDSQSTV+DCAT+FALSTM SSVQIYNLSQNIQEDDLQ LQLFTEYGRLA+ + +K Sbjct: 124 QGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQK 183 Query: 183 PFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACF 242 PFQ L FLVRDWSFPYE YG GG L +RL+V + QH E+Q++R HI SCF++V CF Sbjct: 184 PFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCF 243 Query: 243 LMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDLIQ 302 L+PHPGL VAT+P FDG+L+DI EFK L++L+P +L P L+ KEI+G +V R L++ Sbjct: 244 LLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLE 303 Query: 303 YFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHL 362 YF++Y+ IY+G +LP PKSML ATAEAN+L A A+AK++Y MEEVCGG +PYLS L Sbjct: 304 YFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDIL 363 Query: 363 QTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAAR 421 + +H K AL F +KMGG++F+ +++++LE++++E++ N+ HN SKN+F R Sbjct: 364 EEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 422 >6B9G-B nrPDB Length = 340 Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust. Identities = 190/308 (61%), Positives = 251/308 (81%), Gaps = 4/308 (1%) Query: 6 VQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSK 65 VQV+ ++H+F L+E AL+ +L+ + V+D+ V VSVAGAFRKGKSFL+DF LRYMY Sbjct: 36 VQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMY-- 93 Query: 66 YVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGA 125 + ++ DW+G ++PL GFSWRGGSER+TTGI +WS+IFL + P+G K+A++L+DTQG Sbjct: 94 --NQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGT 151 Query: 126 FDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQ 185 FDSQST+RD ATVFALSTM+SS+Q+YNLSQN+QEDDLQHLQLFTEYGRLA+ +T KPFQ Sbjct: 152 FDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQ 211 Query: 186 RLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACFLMP 245 L FLVRDWSFPYE YGA GG K L++RL+VS QH ELQ++R+HI SCFT ++CFL+P Sbjct: 212 SLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLP 271 Query: 246 HPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDLIQYFQ 305 HPGL VATNP FDG+L++I EF +L+ L+P LL+P++L KEI+G ++ R L++YF+ Sbjct: 272 HPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFK 331 Query: 306 SYMNIYKG 313 +Y+ IY+G Sbjct: 332 AYIKIYQG 339 >1F5N-A nrPDB Length = 592 Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 54/347 (15%) Query: 38 VCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTG 97 + VV++ G +R GKS+L++ L G+ +GFS + T G Sbjct: 38 MVVVAIVGLYRTGKSYLMN-----------------KLAGKK---KGFSLGSTVQSHTKG 77 Query: 98 ILMWSDIFLHDYPNGDKIAIILLDTQGAFD-SQSTVRDCATVFALSTMLSSVQIYNLSQN 156 I MW +P ++LLDT+G D + ++ + +FAL+ +LSS +YN Sbjct: 78 IWMWC----VPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGT 133 Query: 157 IQEDDLQHLQLFTEYGRLALADTGKKP--------------FQRLQFLVRDWSFPYEAEY 202 I + + L TE + + F + +RD+S EA+ Sbjct: 134 INQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADG 193 Query: 203 GALGGDKILKRRLEVSD--KQHPELQSLRR-HISSCFTEVACFLMPHP--GLNVATNPKF 257 L D+ L L++ Q E +L R I F + CF+ P +A K Sbjct: 194 QPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKL 253 Query: 258 DGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQ-RVRARDLIQYFQSYMNIYKGNEL 316 +++ PEF + + + N K +SG +V L +Y+N +L Sbjct: 254 QD--EELDPEFVQQVADFCSYIFS--NSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDL 309 Query: 317 PEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQ 363 P ++ ++A A+ + AV A Y Q M G + L T LQ Sbjct: 310 PCMENAVLALAQIENSAAVQKAIAHYEQQM-----GQKVQLPTESLQ 351 >2D4H-A nrPDB Length = 328 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/301 (23%), Positives = 122/301 (40%), Gaps = 49/301 (16%) Query: 38 VCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTG 97 + VV++ G +R GKS+L++ L G+ +GFS + T G Sbjct: 49 MVVVAIVGLYRTGKSYLMN-----------------KLAGKK---KGFSLGSTVQSHTKG 88 Query: 98 ILMWSDIFLHDYPNGDKIAIILLDTQGAFD-SQSTVRDCATVFALSTMLSSVQIYNLSQN 156 I MW +P ++LLDT+G D + ++ + +FAL+ +LSS +YN Sbjct: 89 IWMWC----VPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGT 144 Query: 157 IQEDDLQHLQLFTEYGRLALADTGKKP--------------FQRLQFLVRDWSFPYEAEY 202 I + + L TE + + F + +RD+S EA+ Sbjct: 145 INQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADG 204 Query: 203 GALGGDKILKRRLEVSD--KQHPELQSLRR-HISSCFTEVACFLMPHPGLNVATNPKFDG 259 L D+ L L++ Q E +L R I F + CF+ P ++ + + Sbjct: 205 QPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRP-VHRRKLAQLE- 262 Query: 260 RLQD--ITPEFKSSLRSLVPMLLAPDNLVYKEISGQ-RVRARDLIQYFQSYMNIYKGNEL 316 +LQD + PEF + + + N K +SG +V L +Y+N +L Sbjct: 263 KLQDEELDPEFVQQVADFCSYIFS--NSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDL 320 Query: 317 P 317 P Sbjct: 321 P 321 >5NKZ-A nrPDB Length = 190 Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 11/103 (10%) Query: 224 ELQSLRRHISSCFTEVACFLMPHPGLNVATNPK-FDGRLQDITPEF--KSSLRSLVPMLL 280 +++ L+R SS +V C+ MPHP +N T D Q +P + +S+L ++V +L Sbjct: 89 KIRQLQRKTSSGARKV-CYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLA 147 Query: 281 APDNLVYKEISGQRVRA-------RDLIQYFQSYMNIYKGNEL 316 P+ L I + +DL+ Y+ + + Y+ N++ Sbjct: 148 NPEPLSPLNIDMANLLKCDDTTAYKDLVHYYIAKYSAYESNDV 190 >4LZI-A nrPDB Length = 282 Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%) Query: 147 SVQIYNLSQNIQEDDLQHLQLFTE-------YGRLALADTGKKPFQRLQFLVRDW-SFPY 198 +VQ YN +N + +++L + + Y L D GKK + V++W +F Sbjct: 119 AVQDYNKKENAHLEFVENLNVKEQLVAGMLYYITLVAIDAGKKKIYEAKIWVKEWENFKK 178 Query: 199 EAEYGALGGDK-ILKRRLEVSDKQHPELQSLRR 230 E+ +G D I+ +V +PE Q L R Sbjct: 179 VIEFKLIGDDSAIIGGFTDVPFPNNPEFQDLAR 211 >4NQ1-A nrPDB Length = 290 Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 13/89 (14%) Query: 263 DITPEFKSSLRSLVPMLLAPDNLV-YKEISGQRVRARDLIQYFQSYMNIYKGNELPEPKS 321 D+ PE + L + N++ KE +GQ R + +++ + +++Y G++L + Sbjct: 141 DMLPETVARLAKI-------SNIIGIKEATGQMTRLQQILRLCEGSIDVYSGDDLTAAQW 193 Query: 322 MLVATAEANHLTAVAAAKELYGQLMEEVC 350 +L +TA AAK LM ++C Sbjct: 194 LLSGAKGVISVTANVAAK-----LMAKMC 217 >3A8P-A nrPDB Length = 263 Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 304 FQSYMNIYKGNELPEPKSMLVATAEANHL 332 + Y+ +G ELP PKS+L AT+ + L Sbjct: 198 MRCYLASLQGGELPNPKSLLAATSRPSKL 226 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3X1D-A nrPDB 937 0.0 3QOF-A nrPDB 693 0.0 5VGR-A nrPDB 653 0.0 6B9G-B nrPDB 511 e-145 1F5N-A nrPDB 396 e-110 2D4H-A nrPDB 343 2e-94 Sequences not found previously or not previously below threshold: 4JF0-A nrPDB 34 0.22 3A8P-A nrPDB 32 0.66 3GBX-A nrPDB 31 1.2 3G8M-A nrPDB 31 1.6 2IPC-A nrPDB 31 1.6 5NKZ-A nrPDB 31 1.6 5VMB-A nrPDB 30 2.1 1SEZ-A nrPDB 29 4.5 3CH4-B nrPDB 29 5.8 4MDT-A nrPDB 29 6.2 2ZWI-A nrPDB 29 6.9 1ZG3-A nrPDB 29 7.2 5C0W-L nrPDB 29 7.7 3ZOR-A nrPDB 29 7.9 5NED-C nrPDB 28 9.2 CONVERGED! >3X1D-A nrPDB Length = 541 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 541/541 (100%), Positives = 541/541 (100%) Query: 1 MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLR 60 MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLR Sbjct: 1 MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLR 60 Query: 61 YMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILL 120 YMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILL Sbjct: 61 YMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILL 120 Query: 121 DTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTG 180 DTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTG Sbjct: 121 DTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTG 180 Query: 181 KKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVA 240 KKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVA Sbjct: 181 KKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVA 240 Query: 241 CFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL 300 CFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL Sbjct: 241 CFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL 300 Query: 301 IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTA 360 IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTA Sbjct: 301 IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTA 360 Query: 361 HLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAA 420 HLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAA Sbjct: 361 HLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAA 420 Query: 421 RTPAVYFACAVIMYILSGIFGLVGLYTFANFCNLVMGVALLTLALWAYIRYSGELSDFGG 480 RTPAVYFACAVIMYILSGIFGLVGLYTFANFCNLVMGVALLTLALWAYIRYSGELSDFGG Sbjct: 421 RTPAVYFACAVIMYILSGIFGLVGLYTFANFCNLVMGVALLTLALWAYIRYSGELSDFGG 480 Query: 481 KLDDFATLLWEKFMRPIYHGCMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKR 540 KLDDFATLLWEKFMRPIYHGCMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKR Sbjct: 481 KLDDFATLLWEKFMRPIYHGCMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKR 540 Query: 541 S 541 S Sbjct: 541 S 541 >3QOF-A nrPDB Length = 459 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 250/421 (59%), Positives = 337/421 (80%), Gaps = 5/421 (1%) Query: 2 GGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRY 61 G VQV+ ++H+F L+E AL+ +L+ + V+D+ V VSVAGAFRKGKSFL+DF LRY Sbjct: 44 AGP-VQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 102 Query: 62 MYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLD 121 MY++ ++ DW+G ++PL GFSWRGGSER+TTGI +WS+IFL + P+G K+A++L+D Sbjct: 103 MYNQ----ESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 158 Query: 122 TQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGK 181 TQG FDSQST+RD ATVFALSTM+SS+Q+YNLSQN+QEDDLQHLQLFTEYGRLA+ +T Sbjct: 159 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 218 Query: 182 KPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVAC 241 KPFQ L FLVRDWSFPYE YGA GG K L++RL+VS QH ELQ++R+HI SCFT ++C Sbjct: 219 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 278 Query: 242 FLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDLI 301 FL+PHPGL VATNP FDG+L++I EF +L+ L+P LL+P++L KEI+G ++ R L+ Sbjct: 279 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 338 Query: 302 QYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAH 361 +YF++Y+ IY+G ELP PKSML ATAEAN+L AVA AK+ Y + MEE+CGG +P+L+ Sbjct: 339 EYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPND 398 Query: 362 LQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAAR 421 LQT+HL++K++++ F +KMGGEEF+ ++ +QLE +++E++ Y HN+SKNIF AAR Sbjct: 399 LQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAAR 458 Query: 422 T 422 T Sbjct: 459 T 459 >5VGR-A nrPDB Length = 431 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 237/419 (56%), Positives = 319/419 (76%), Gaps = 1/419 (0%) Query: 3 GSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYM 62 G V+ ++H+F L+E AL+ +L++D ++D V VVSVAGAFRKGKSF+LDF LRY+ Sbjct: 5 GPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYL 64 Query: 63 YSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDT 122 YS+ ++WLG +PL GFSWRGGS+ +TTGI +WS++F + P G K+A++L+DT Sbjct: 65 YSQK-ESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMDT 123 Query: 123 QGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKK 182 QGAFDSQSTV+DCAT+FALSTM SSVQIYNLSQNIQEDDLQ LQLFTEYGRLA+ + +K Sbjct: 124 QGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQK 183 Query: 183 PFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACF 242 PFQ L FLVRDWSFPYE YG GG L +RL+V + QH E+Q++R HI SCF++V CF Sbjct: 184 PFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCF 243 Query: 243 LMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDLIQ 302 L+PHPGL VAT+P FDG+L+DI EFK L++L+P +L P L+ KEI+G +V R L++ Sbjct: 244 LLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLE 303 Query: 303 YFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHL 362 YF++Y+ IY+G +LP PKSML ATAEAN+L A A+AK++Y MEEVCGG +PYLS L Sbjct: 304 YFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDIL 363 Query: 363 QTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAAR 421 + +H K AL F +KMGG++F+ +++++LE++++E++ N+ HN SKN+F R Sbjct: 364 EEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 422 >6B9G-B nrPDB Length = 340 Score = 511 bits (1317), Expect = e-145, Method: Composition-based stats. Identities = 191/313 (61%), Positives = 253/313 (80%), Gaps = 5/313 (1%) Query: 2 GGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRY 61 G VQV+ ++H+F L+E AL+ +L+ + V+D+ V VSVAGAFRKGKSFL+DF LRY Sbjct: 33 AGP-VQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 91 Query: 62 MYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLD 121 MY++ ++ DW+G ++PL GFSWRGGSER+TTGI +WS+IFL + P+G K+A++L+D Sbjct: 92 MYNQ----ESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 147 Query: 122 TQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGK 181 TQG FDSQST+RD ATVFALSTM+SS+Q+YNLSQN+QEDDLQHLQLFTEYGRLA+ +T Sbjct: 148 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 207 Query: 182 KPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVAC 241 KPFQ L FLVRDWSFPYE YGA GG K L++RL+VS QH ELQ++R+HI SCFT ++C Sbjct: 208 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 267 Query: 242 FLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDLI 301 FL+PHPGL VATNP FDG+L++I EF +L+ L+P LL+P++L KEI+G ++ R L+ Sbjct: 268 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 327 Query: 302 QYFQSYMNIYKGN 314 +YF++Y+ IY+G Sbjct: 328 EYFKAYIKIYQGE 340 >1F5N-A nrPDB Length = 592 Score = 396 bits (1017), Expect = e-110, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 160/399 (40%), Gaps = 60/399 (15%) Query: 38 VCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTG 97 + VV++ G +R GKS+L++ L G+ +GFS + T G Sbjct: 38 MVVVAIVGLYRTGKSYLMN-----------------KLAGKK---KGFSLGSTVQSHTKG 77 Query: 98 ILMWSDIFLHDYPNGDKIAIILLDTQGAFD-SQSTVRDCATVFALSTMLSSVQIYNLSQN 156 I MW +P ++LLDT+G D + ++ + +FAL+ +LSS +YN Sbjct: 78 IWMWC----VPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGT 133 Query: 157 IQEDDLQHLQLFTEYGRLALADTGKKP--------------FQRLQFLVRDWSFPYEAEY 202 I + + L TE + + F + +RD+S EA+ Sbjct: 134 INQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADG 193 Query: 203 GALGGDKILKRRLEVSD--KQHPELQSLRR-HISSCFTEVACFLMPHP--GLNVATNPKF 257 L D+ L L++ Q E +L R I F + CF+ P +A K Sbjct: 194 QPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKL 253 Query: 258 DGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQ-RVRARDLIQYFQSYMNIYKGNEL 316 +++ PEF + + + N K +SG +V L +Y+N +L Sbjct: 254 QD--EELDPEFVQQVADFCSYIFS--NSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDL 309 Query: 317 PEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQT---EHLRVKDKA 373 P ++ ++A A+ + AV A Y Q M G + L T LQ H + +A Sbjct: 310 PCMENAVLALAQIENSAAVQKAIAHYEQQM-----GQKVQLPTESLQELLDLHRDSEREA 364 Query: 374 LFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNE 412 + F + ++ F+K+L LE+ ++ N+ Sbjct: 365 IEVFI---RSSFKDVDHLFQKELAAQLEKKRDDFCKQNQ 400 >2D4H-A nrPDB Length = 328 Score = 343 bits (879), Expect = 2e-94, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 123/308 (39%), Gaps = 49/308 (15%) Query: 38 VCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTG 97 + VV++ G +R GKS+L++ L G+ +GFS + T G Sbjct: 49 MVVVAIVGLYRTGKSYLMN-----------------KLAGKK---KGFSLGSTVQSHTKG 88 Query: 98 ILMWSDIFLHDYPNGDKIAIILLDTQGAFD-SQSTVRDCATVFALSTMLSSVQIYNLSQN 156 I MW +P ++LLDT+G D + ++ + +FAL+ +LSS +YN Sbjct: 89 IWMWC----VPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGT 144 Query: 157 IQEDDLQHLQLFTEYGRLALADTGKKP--------------FQRLQFLVRDWSFPYEAEY 202 I + + L TE + + F + +RD+S EA+ Sbjct: 145 INQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADG 204 Query: 203 GALGGDKILKRRLEVSD--KQHPELQSLRR-HISSCFTEVACFLMPHP--GLNVATNPKF 257 L D+ L L++ Q E +L R I F + CF+ P +A K Sbjct: 205 QPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKL 264 Query: 258 DGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQ-RVRARDLIQYFQSYMNIYKGNEL 316 +++ PEF + + + N K +SG +V L +Y+N +L Sbjct: 265 QD--EELDPEFVQQVADFCSYIFS--NSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDL 320 Query: 317 PEPKSMLV 324 P ++ ++ Sbjct: 321 PCMENAVL 328 >4JF0-A nrPDB Length = 422 Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 62/183 (33%), Gaps = 28/183 (15%) Query: 239 VACFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRAR 298 V + H V + +G +Q TPEF LR L LV+ E+ R Sbjct: 194 VKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE--HQALLVFDEVQCGMGRTG 251 Query: 299 DLIQY--------FQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQL--MEE 348 DL Y + G P S ++ T E V + YG Sbjct: 252 DLFAYMHYGVTPDILTSAKALGGG---FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACA 308 Query: 349 VCGGTRPYL-STAHLQ---------TEHLRVKDKALFQFAAKRKMG---GEEFTEKFRKQ 395 V G T + + LQ +HL+ D+ F+ R MG G E K++ + Sbjct: 309 VAGATFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGR 368 Query: 396 LED 398 D Sbjct: 369 ARD 371 >3A8P-A nrPDB Length = 263 Score = 32.0 bits (71), Expect = 0.66, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 11/79 (13%) Query: 263 DITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRA--RDLIQY------FQSYMNIYKGN 314 D+ + K + ++ P N E ++R ++L ++ + Y+ +G Sbjct: 152 DMDSKMKKMAELQLSVVSDPKNRKAIE---NQIRQWEQNLEKFHMDLFRMRCYLASLQGG 208 Query: 315 ELPEPKSMLVATAEANHLT 333 ELP PKS+L AT+ + L Sbjct: 209 ELPNPKSLLAATSRPSKLA 227 >3GBX-A nrPDB Length = 420 Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 12/113 (10%) Query: 320 KSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFAA 379 + M +A +A A+ K + +E + + Y S +Q + ++ +K + Sbjct: 7 REMNIADYDAELWQAMEQEKVRQEEHIELI--ASENYTSPRVMQAQGSQLTNKYAEGYPG 64 Query: 380 KRKMGGEEFTEKFRKQLEDDLEEV----FTNYQAHNESKNIFKAARTPAVYFA 428 KR GG E+ + + D +E+ + N Q H+ S+ F AVY A Sbjct: 65 KRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANF------AVYTA 111 >3G8M-A nrPDB Length = 417 Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 12/113 (10%) Query: 320 KSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFAA 379 + M +A +A A+ K + +E + + Y S +Q + ++ +K + Sbjct: 4 REMNIADYDAELWQAMEQEKVRQEEHIELI--ASENYTSPRVMQAQGSQLTNKFAEGYPG 61 Query: 380 KRKMGGEEFTEKFRKQLEDDLEEV----FTNYQAHNESKNIFKAARTPAVYFA 428 KR GG E+ + + D +E+ + N Q H+ S+ F AVY A Sbjct: 62 KRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANF------AVYTA 108 >2IPC-A nrPDB Length = 997 Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 7/95 (7%) Query: 326 TAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGG 385 A+A V A + G+ + GG YL+ A L+ E + + F K G Sbjct: 561 VAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGK 620 Query: 386 EEFTEKF------RKQLEDDLEEVFTNYQAHNESK 414 EE R++L + + E+ +E + Sbjct: 621 EEEARALAQELGIREELLERIREIREE-CKQDEER 654 >5NKZ-A nrPDB Length = 190 Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 20/146 (13%) Query: 181 KKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVA 240 + PF+ + + Y +++ +++ L+R SS Sbjct: 55 QSPFEDALWKLE---IDIPTNYPLDPP------KIKFVVFGEEKIRQLQRKTSSG-ARKV 104 Query: 241 CFLMPHPGLNVATNPK-FDGRLQDITPEFKSS--LRSLVPMLLAPDNLVYKEIS-GQRVR 296 C+ MPHP +N T D Q +P + L ++V +L P+ L I ++ Sbjct: 105 CYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLK 164 Query: 297 A------RDLIQYFQSYMNIYKGNEL 316 +DL+ Y+ + + Y+ N++ Sbjct: 165 CDDTTAYKDLVHYYIAKYSAYESNDV 190 >5VMB-A nrPDB Length = 425 Score = 30.5 bits (67), Expect = 2.1, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 324 VATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKM 383 ++ +E + A A A E Q + Y S A ++ + ++ +K + KR Sbjct: 13 ISISEFDPELAQAIASEDERQEAHIELIASENYCSPAVMEAQGSKLTNKYAEGYPGKRYY 72 Query: 384 GGEEFTEKFRKQLEDDLEEV----FTNYQAHNESKNIFKAARTPAVYFA 428 GG EF + + D +E+ + N Q H S+ AVY A Sbjct: 73 GGCEFVDVIEQMAIDRAKELFGADYANVQPHAGSQ------ANSAVYLA 115 >1SEZ-A nrPDB Length = 504 Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 9 INASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVH 68 I ++ H E++ V+M + D ++ ++G FLL+F Y Sbjct: 282 IISASPHKRQSEEESFDAVIMTAPLCDVKSMKIA-----KRGNPFLLNFIPEVDYVPLSV 336 Query: 69 HDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIF 105 T PLEGF S+ G+ +F Sbjct: 337 VITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLF 373 >3CH4-B nrPDB Length = 202 Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 28/155 (18%) Query: 63 YSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDT 122 Y + D W + GF R E + I + SD D Sbjct: 70 YKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIWLVSDTRRVS------------DI 117 Query: 123 QGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKK 182 Q ++ V V AL ++ Q +FT A ++ G Sbjct: 118 QWFREAYGAVTQTVRVVAL----------------EQSRQQRGWVFTPGVDDAESECGLD 161 Query: 183 PFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEV 217 F +++ + E + ++ RL++ Sbjct: 162 NFGDFDWVIENHGVEQRLEEQLENLIEFIRSRLKL 196 >4MDT-A nrPDB Length = 305 Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 6/88 (6%) Query: 1 MGGSAVQVINASEEHTFVLN----EDALSEVLMRDEVKDRFVCVVSVAGAFRKGKS--FL 54 +GGS I + + ED M D + D F+C ++ GAF KS L Sbjct: 208 LGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHAL 267 Query: 55 LDFFLRYMYSKYVHHDATDWLGGESDPL 82 + L+ + +K + + PL Sbjct: 268 NNKLLQAVLAKQEAWEYVTFQDDAELPL 295 >2ZWI-A nrPDB Length = 373 Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 63/179 (35%), Gaps = 26/179 (14%) Query: 261 LQDITPEFKSS----LRSLVPMLLAPDNLVYKEISGQRVRARDLIQYFQS---------- 306 L+ I F + ++SL M+L + + I+G + A D++ +S Sbjct: 47 LESINGSFFKNRPELIKSLDSMILTNE-IKKVIINGNTLWAVDVVNIIKSIEALGKKTEI 105 Query: 307 -----------YMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRP 355 Y+ +Y + LPE + + +++ + + + +E + G ++ Sbjct: 106 ELNFYDDGSAEYVRLYDFSRLPESEQEYKISLSKDNIQSSINGTQPFDNSIENIYGFSQL 165 Query: 356 YLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESK 414 Y +T H+ + + L ++ + + F N+ N K Sbjct: 166 YPTTYHMLRADIFETNLPLTSLKRVISNNIKQMKWDYFTTFNSQQKNKFYNFTGFNPEK 224 >1ZG3-A nrPDB Length = 358 Score = 28.5 bits (62), Expect = 7.2, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 230 RHISSCFTEVACFLMPHPGL--NVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDN 284 + I F + C + P + N+ N + D+ S+ L+ +L N Sbjct: 209 KLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWN 265 >5C0W-L nrPDB Length = 184 Score = 28.5 bits (62), Expect = 7.7, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 68/182 (37%), Gaps = 12/182 (6%) Query: 223 PELQSLRRHISSCFTEVACFLMPHPGLNVATNPKFDGRLQDITPEFKS-SLRSLVPMLLA 281 +++ ++ ++ S P + T+ D +L ++ E L + +L+ Sbjct: 2 EDIEKIKPYVRSF---SKALDELKPEIEKLTSKSLDEQLLLLSDERAKLELINRYAYVLS 58 Query: 282 PDNLVYKEISGQRVRARDLIQY--FQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAK 339 ++ G + + L + +SYM+ K + KS + AE AK Sbjct: 59 SLMFANMKVLGVKDMSPILGELKRVKSYMDKAKQYDNRITKSNEKSQAEQE------KAK 112 Query: 340 ELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDD 399 + +++ P +S ++ Q +H + ++ L + + + + K + Sbjct: 113 NIISNVLDGNKNQFEPSISRSNFQGKHTKFENDELAESTTTKIIDSTDHIRKASSKKSKR 172 Query: 400 LE 401 L+ Sbjct: 173 LD 174 >3ZOR-A nrPDB Length = 225 Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 20/34 (58%) Query: 386 EEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKA 419 EEF + + ++L + L+ + + +S++IF A Sbjct: 15 EEFEKPYYQELREMLKREYAEQTIYPDSRDIFNA 48 >5NED-C nrPDB Length = 220 Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 19/40 (47%) Query: 85 FSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQG 124 +++ +TT + W +F + D A+++L + G Sbjct: 167 YAYTASDTAETTNVQGWVCLFQITHGKADGDALVVLASAG 206 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.130 0.351 Lambda K H 0.267 0.0402 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,342,902 Number of Sequences: 36641 Number of extensions: 800751 Number of successful extensions: 2140 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 2099 Number of HSP's gapped (non-prelim): 34 length of query: 541 length of database: 10,336,785 effective HSP length: 102 effective length of query: 439 effective length of database: 6,599,403 effective search space: 2897137917 effective search space used: 2897137917 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 61 (28.1 bits)