BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q9ULX3
(412 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
6G5I-y nrPDB 858 0.0
2LCQ-A nrPDB 47 1e-05
6N9A-D nrPDB 32 0.60
5Z56-q nrPDB 29 3.1
2AAO-A nrPDB 29 4.4
4FOI-A nrPDB 28 5.3
3GGU-A nrPDB 28 8.0
>6G5I-y nrPDB
Length = 412
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 1 MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP 60
MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP
Sbjct: 1 MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP 60
Query: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE 120
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE 120
Query: 121 TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE 180
TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE
Sbjct: 121 TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE 180
Query: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA 240
DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA
Sbjct: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA 240
Query: 241 MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV 300
MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV
Sbjct: 241 MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV 300
Query: 301 SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN 360
SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN
Sbjct: 301 SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN 360
Query: 361 VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 412
VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR
Sbjct: 361 VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 412
>2LCQ-A nrPDB
Length = 165
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 7 VVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVL--PYELRFKEPLPEYVR 64
+V D+ F++ ++ YT VV EI+D+ ++ L L +++ EP E +
Sbjct: 13 LVLDSSVFIQGIDIEG-----YTTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESID 67
Query: 65 LVTEFSKKTGDYPSLSATDIQVLALTYQLEAEF 97
+ + +K+TG+ LS DI+VLAL Y+L+ E
Sbjct: 68 RIIQVAKETGEVNELSKADIEVLALAYELKGEI 100
>6N9A-D nrPDB
Length = 330
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 19 ALQDIGKNI---YTIREVVTEIRDK--------ATRRRLAVLPYELR--FKEPLPEYVRL 65
A+ D GKN+ +T+ ++ E+ K A R L LP L+ F++ PE V +
Sbjct: 19 AVLDDGKNVVVNFTVSQI--EVHQKFGGVVPEVAARHHLKNLPILLKKAFEKVPPETVDV 76
Query: 66 VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSS-SIQHPETPLH 124
V + G +L L LE FVGV+H++ Q V +++ ++ P L
Sbjct: 77 VAA-TYGPGLIGALLVGLSAAKGLAISLEKPFVGVNHVEAHVQAVFLANPDLKPPLVVLM 135
Query: 125 ISGFH 129
+SG H
Sbjct: 136 VSGGH 140
>5Z56-q nrPDB
Length = 504
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 22 DIGKNIYTIREVVTEIRDKAT------RRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGD 75
D+G+ + E++ +++DKAT ++R +P EL E L +Y ++ + +
Sbjct: 161 DLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSAS 220
Query: 76 YPSLSATDI 84
P + A D+
Sbjct: 221 IPGILALDL 229
>2AAO-A nrPDB
Length = 166
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 202 DDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFAMQN 243
D DG G+ITP ++QQ E+ V EDVR+ L D N
Sbjct: 109 DKDGSGYITPD---ELQQACEEFGV-EDVRIEELMRDVDQDN 146
>4FOI-A nrPDB
Length = 917
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 19/108 (17%)
Query: 241 MQNVLLQMGLHVLAVNGMLIREARSYILR-----CHGCFKTTSDMSRVFCSHCGNKTLKK 295
++ +L Q+GL+ + +L++ + R C D R N+ L +
Sbjct: 800 VRAILQQLGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIR------ENRGLDR 853
Query: 296 VSVTVSDDGT---LHMHFSR----NPKVLNPR-GLRYSLPTPKGGKYA 335
++VTV DGT LH HFSR K L+P+ + + L GK A
Sbjct: 854 LNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGA 901
>3GGU-A nrPDB
Length = 99
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 159 FWRNPLPN--IDHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQ 216
W+ P+ I+ +L+E L+D G D EE ++ R GG++ Q
Sbjct: 5 LWQRPIVTVKIEGQLKEALLDTGADDTVFEELTLSGRWKPRLIGGI---GGFVRVRQYDQ 61
Query: 217 IQQELEQCDVPEDVRVGCLTTDFAMQNVLLQMG 249
+ E+ V + V VG T+ +NV+ Q+G
Sbjct: 62 VPIEICGHKVIDTVLVGPTPTNVIGRNVMTQLG 94
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
6G5I-y nrPDB 862 0.0
2LCQ-A nrPDB 128 4e-30
Sequences not found previously or not previously below threshold:
3CRV-A nrPDB 32 0.36
3HAI-A nrPDB 31 1.0
1UZR-A nrPDB 31 1.2
2AAO-A nrPDB 31 1.2
6N9A-D nrPDB 30 1.5
3LLL-A nrPDB 30 1.7
4FOI-A nrPDB 30 2.5
5Z56-q nrPDB 29 4.2
3GGU-A nrPDB 28 5.4
CONVERGED!
>6G5I-y nrPDB
Length = 412
Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats.
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 1 MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP 60
MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP
Sbjct: 1 MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP 60
Query: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE 120
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE 120
Query: 121 TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE 180
TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE
Sbjct: 121 TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE 180
Query: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA 240
DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA
Sbjct: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA 240
Query: 241 MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV 300
MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV
Sbjct: 241 MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV 300
Query: 301 SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN 360
SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN
Sbjct: 301 SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN 360
Query: 361 VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 412
VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR
Sbjct: 361 VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 412
>2LCQ-A nrPDB
Length = 165
Score = 128 bits (322), Expect = 4e-30, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 7 VVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVL--PYELRFKEPLPEYVR 64
+V D+ F++ ++ YT VV EI+D+ ++ L L +++ EP E +
Sbjct: 13 LVLDSSVFIQGIDIEG-----YTTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESID 67
Query: 65 LVTEFSKKTGDYPSLSATDIQVLALTYQLEAEF 97
+ + +K+TG+ LS DI+VLAL Y+L+ E
Sbjct: 68 RIIQVAKETGEVNELSKADIEVLALAYELKGEI 100
>3CRV-A nrPDB
Length = 551
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 19 ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELR-FKEPLPEYVRLVTEFSKKTGDYP 77
L++ + TI+ + + + + +RR L+ L +LR P +Y+ K + P
Sbjct: 190 ELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI--------KVENVP 241
Query: 78 SLSATDIQVLALTYQ 92
LS ++++LA Y+
Sbjct: 242 KLSKEELEILADDYE 256
>3HAI-A nrPDB
Length = 308
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 120 ETPLHISGFHLPYKP--KPPQETEKG----HSACEPENLEFSSFMFWRNPLPNIDHELQE 173
ET GF KP K +E E H AC+ E L + M + ++ E Q+
Sbjct: 131 ETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTE-QSVTPEQQK 189
Query: 174 LLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVG 233
L D+ + + ++ +E +E +D G TP ++ ++Q EQC E+ R+
Sbjct: 190 KLQDKVDKCKQDVQKTQEK-YEKVLEDV-----GKTTPQYMENMEQVFEQCQQFEEKRL- 242
Query: 234 CLTTDFAMQNVLLQMGLHV-LAVNGMLIREAR 264
++ VLL + H+ LA N I R
Sbjct: 243 -----VFLKEVLLDIKRHLNLAENSSYIHVYR 269
>1UZR-A nrPDB
Length = 296
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 92 QLEAEFVGVSHLKQEPQKVKVSSSIQHPETPLHISGFHLP 131
Q +AE V S+ EP K KV+S++ E+ L SGF+LP
Sbjct: 137 QRKAEIVLQSYRGDEPLKRKVASTLL--ESFLFYSGFYLP 174
>2AAO-A nrPDB
Length = 166
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 202 DDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFAMQN 243
D DG G+ITP ++QQ E+ V EDVR+ L D N
Sbjct: 109 DKDGSGYITPD---ELQQACEEFGV-EDVRIEELMRDVDQDN 146
>6N9A-D nrPDB
Length = 330
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 33 VVTEIRDKATRRRLAVLPYELR--FKEPLPEYVRLVTEFSKKTGDYPSLSATDIQVLALT 90
VV E+ A R L LP L+ F++ PE V V + G +L L
Sbjct: 45 VVPEV---AARHHLKNLPILLKKAFEKVPPETVD-VVAATYGPGLIGALLVGLSAAKGLA 100
Query: 91 YQLEAEFVGVSHLKQEPQKVKVSS-SIQHPETPLHISGFH 129
LE FVGV+H++ Q V +++ ++ P L +SG H
Sbjct: 101 ISLEKPFVGVNHVEAHVQAVFLANPDLKPPLVVLMVSGGH 140
>3LLL-A nrPDB
Length = 287
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 25/198 (12%)
Query: 52 ELRFKEPLPEYVRLVTEFSKKTGDYPSLSATDIQVLALT---YQLEAEFVGVSHLKQEPQ 108
E + + L E+ R + +K Y ++ I V++ +L E V S + ++ +
Sbjct: 37 EKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWIAVMSEAERVSELHLE-VKASLMNEDFE 95
Query: 109 KVK-VSSSIQHP-------ETPLHISGFHLPYKP--KPPQETEKG----HSACEPENLEF 154
K+K H ET GF KP K +E E H+AC+ E L
Sbjct: 96 KIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHTACKEEKLAI 155
Query: 155 SSFMFWRNPLPNIDHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNI 214
S + P+++ E + L D+ E ++ + ++ +E + D TP +
Sbjct: 156 SREANSKAD-PSLNPEQLKKLQDKIEKC-KQDVLKTKDKYEKSLKELDQ-----TTPQYM 208
Query: 215 KQIQQELEQCDVPEDVRV 232
+ ++Q EQC E+ R+
Sbjct: 209 ENMEQVFEQCQQFEEKRL 226
>4FOI-A nrPDB
Length = 917
Score = 29.7 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 241 MQNVLLQMGLHVLAVNGMLIREARSYILR-----CHGCFKTTSDMSRVFCSHCGNKTLKK 295
++ +L Q+GL+ + +L++ + R C D R N+ L +
Sbjct: 800 VRAILQQLGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIR------ENRGLDR 853
Query: 296 VSVTVSDDGT---LHMHFSR 312
++VTV DGT LH HFSR
Sbjct: 854 LNVTVGVDGTLYKLHPHFSR 873
>5Z56-q nrPDB
Length = 504
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 22 DIGKNIYTIREVVTEIRDKAT------RRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGD 75
D+G+ + E++ +++DKAT ++R +P EL E L +Y ++ + +
Sbjct: 161 DLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSAS 220
Query: 76 YPSLSATDI 84
P + A D+
Sbjct: 221 IPGILALDL 229
>3GGU-A nrPDB
Length = 99
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 159 FWRNPLPN--IDHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQ 216
W+ P+ I+ +L+E L+D G D EE ++ R GG++ Q
Sbjct: 5 LWQRPIVTVKIEGQLKEALLDTGADDTVFEELTLSGRWKPRLIGGI---GGFVRVRQYDQ 61
Query: 217 IQQELEQCDVPEDVRVGCLTTDFAMQNVLLQMG 249
+ E+ V + V VG T+ +NV+ Q+G
Sbjct: 62 VPIEICGHKVIDTVLVGPTPTNVIGRNVMTQLG 94
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.315 0.134 0.382
Lambda K H
0.267 0.0412 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,806,674
Number of Sequences: 36641
Number of extensions: 727717
Number of successful extensions: 2784
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2551
Number of HSP's gapped (non-prelim): 203
length of query: 412
length of database: 10,336,785
effective HSP length: 99
effective length of query: 313
effective length of database: 6,709,326
effective search space: 2100019038
effective search space used: 2100019038
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)