BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9UJX4 (755 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5A31-O nrPDB 1539 0.0 5BPZ-A nrPDB 290 2e-78 6IGX-B nrPDB 31 2.4 6FK4-A nrPDB 30 2.9 3B0C-T nrPDB 30 4.4 3EUH-A nrPDB 30 5.1 5A01-A nrPDB 29 5.9 >5A31-O nrPDB Length = 755 Score = 1539 bits (3984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 747/755 (98%), Positives = 751/755 (99%) Query: 1 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKIAVLVLLNEMSRTGEGAVSLMERRRL 60 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKIAVLVLL+EMSRTGEGAVSL+ERRRL Sbjct: 1 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKIAVLVLLSEMSRTGEGAVSLVERRRL 60 Query: 61 NQLLLPLLQGPDITLSKLYKLIEESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFS 120 NQ LLPLLQGPDIT+SKL KLIEESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFS Sbjct: 61 NQQLLPLLQGPDITVSKLLKLIEESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFS 120 Query: 121 GTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNGEKKTVEDADMELTSR 180 GTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQ+ E KTVEDADMELTSR Sbjct: 121 GTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQSDENKTVEDADMELTSR 180 Query: 181 DEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPASLQKEL 240 DEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPASLQKEL Sbjct: 181 DEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPASLQKEL 240 Query: 241 NNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSL 300 NNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSL Sbjct: 241 NNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSL 300 Query: 301 RYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVL 360 RYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVL Sbjct: 301 RYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVL 360 Query: 361 LEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDI 420 LEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDI Sbjct: 361 LEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDI 420 Query: 421 SIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCHLAELHAEQ 480 SIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCHLAELHAEQ Sbjct: 421 SIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCHLAELHAEQ 480 Query: 481 GCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNS 540 GCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNS Sbjct: 481 GCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNS 540 Query: 541 IEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIA 600 IEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIA Sbjct: 541 IEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIA 600 Query: 601 LPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDK 660 LPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDK Sbjct: 601 LPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDK 660 Query: 661 GRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARL 720 GRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARL Sbjct: 661 GRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARL 720 Query: 721 YHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL 755 YHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL Sbjct: 721 YHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL 755 >5BPZ-A nrPDB Length = 169 Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 135/166 (81%), Positives = 156/166 (93%), Gaps = 2/166 (1%) Query: 1 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKIAVLVLLNEMSRTGEGAVSLMERRRL 60 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKI+VLVLL+EMS+ + +SL+E+RRL Sbjct: 1 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKISVLVLLSEMSKNTK--ISLVEKRRL 58 Query: 61 NQLLLPLLQGPDITLSKLYKLIEESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFS 120 N+ +LPLLQGPD+TLSKL K++EE CP +++SV IRIKLMAEGELKDMEQFFDDL+DSF+ Sbjct: 59 NKQILPLLQGPDMTLSKLIKIVEECCPNVSSSVHIRIKLMAEGELKDMEQFFDDLADSFT 118 Query: 121 GTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNGE 166 GTEPEVHKTSVVGLFLRHMILAY+KLSFSQV+KLYT+LQQYFQ+ E Sbjct: 119 GTEPEVHKTSVVGLFLRHMILAYNKLSFSQVYKLYTSLQQYFQSDE 164 >6IGX-B nrPDB Length = 839 Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 247 NPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAE 287 N DFA H++ L L++ DV +L FD+L+ G E Sbjct: 554 NQDFARKHFVLLLQVLQIDDVTIKISALKAIFDQLMTFGIE 594 >6FK4-A nrPDB Length = 258 Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 299 SLRYAALNLAALHCRFGHYQQ------AELALQEAIRIAQESNDHVCLQHCLSWLYVL-G 351 +++ N+ +L+ R Q ++ + + +++ Q+ LQ + W V G Sbjct: 2 AMKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQ-MMGWHCVWSG 60 Query: 352 QKRSDSYVLLEHSVKKAVHFGLPYLAS 378 QK + ++ SV + VHFGLP L Sbjct: 61 QKTYNGVAIVSRSVPQDVHFGLPALPD 87 >3B0C-T nrPDB Length = 111 Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 120 SGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFK--------LYTALQQYFQNGEKKTVE 171 S EPE+ + + +F ++ ++ ++ V K + + L+ Y Q+ +KTVE Sbjct: 2 STREPEIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVE 61 Query: 172 DADMELTSRDEG 183 AD+EL R +G Sbjct: 62 MADVELLMRRQG 73 >3EUH-A nrPDB Length = 440 Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 36/168 (21%) Query: 62 QLLLPLLQGPDITLSKLYKLIEESCPQL-ANSVQIRIKLMAEGELKDMEQFFDDLS---- 116 +LLL G TL +L +E + +L AN ++I+ M +L +++ DL Sbjct: 205 ELLLSETSG---TLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLD 261 Query: 117 ----------DSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNGE 166 D + G + VHK F+R I F+Q +L ++Q YF Sbjct: 262 RIISWGQQSIDLWIGYDRHVHK------FIRTAIDMDKNRVFAQ--RLRQSVQTYFDEPW 313 Query: 167 KKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEF 214 T +AD L RDE ++++R+EEV+ P + EF Sbjct: 314 ALTYANADRLLDMRDE----------EMALRDEEVTGELPEDLEYEEF 351 >5A01-A nrPDB Length = 710 Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 27/124 (21%) Query: 244 LKFNPDFAEAH----------------YLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAE 287 L+ PDFA AH + Y +R+Q F+ +S + L + Sbjct: 34 LEVFPDFAAAHSNLASVLQQQGKLKEALMHYKEAIRIQPTFADAYSNMGN----TLKELQ 89 Query: 288 SKSNGEEGYGRSLRY------AALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVC-L 340 S + Y R+++ A NLA++H G+ +A + + A+++ + D C L Sbjct: 90 DVSGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 149 Query: 341 QHCL 344 HCL Sbjct: 150 AHCL 153 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5A31-O nrPDB 1417 0.0 5BPZ-A nrPDB 305 5e-83 Sequences not found previously or not previously below threshold: 2I5G-A nrPDB 32 0.98 1RX0-A nrPDB 31 2.6 6FK4-A nrPDB 30 3.0 5A2X-A nrPDB 30 3.2 4A5W-B nrPDB 30 3.4 5H11-A nrPDB 30 4.6 1UP8-A nrPDB 29 7.0 6IGX-B nrPDB 29 7.5 1TUO-A nrPDB 29 7.9 6I44-A nrPDB 29 8.0 1P16-A nrPDB 29 8.0 3EUH-A nrPDB 29 9.2 1QHB-A nrPDB 29 9.3 CONVERGED! >5A31-O nrPDB Length = 755 Score = 1417 bits (3667), Expect = 0.0, Method: Composition-based stats. Identities = 747/755 (98%), Positives = 751/755 (99%) Query: 1 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKIAVLVLLNEMSRTGEGAVSLMERRRL 60 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKIAVLVLL+EMSRTGEGAVSL+ERRRL Sbjct: 1 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKIAVLVLLSEMSRTGEGAVSLVERRRL 60 Query: 61 NQLLLPLLQGPDITLSKLYKLIEESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFS 120 NQ LLPLLQGPDIT+SKL KLIEESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFS Sbjct: 61 NQQLLPLLQGPDITVSKLLKLIEESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFS 120 Query: 121 GTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNGEKKTVEDADMELTSR 180 GTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQ+ E KTVEDADMELTSR Sbjct: 121 GTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQSDENKTVEDADMELTSR 180 Query: 181 DEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPASLQKEL 240 DEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPASLQKEL Sbjct: 181 DEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPASLQKEL 240 Query: 241 NNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSL 300 NNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSL Sbjct: 241 NNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSL 300 Query: 301 RYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVL 360 RYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVL Sbjct: 301 RYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVL 360 Query: 361 LEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDI 420 LEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDI Sbjct: 361 LEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDI 420 Query: 421 SIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCHLAELHAEQ 480 SIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCHLAELHAEQ Sbjct: 421 SIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCHLAELHAEQ 480 Query: 481 GCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNS 540 GCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNS Sbjct: 481 GCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNS 540 Query: 541 IEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIA 600 IEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIA Sbjct: 541 IEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIA 600 Query: 601 LPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDK 660 LPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDK Sbjct: 601 LPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDK 660 Query: 661 GRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARL 720 GRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARL Sbjct: 661 GRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARL 720 Query: 721 YHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL 755 YHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL Sbjct: 721 YHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL 755 >5BPZ-A nrPDB Length = 169 Score = 305 bits (781), Expect = 5e-83, Method: Composition-based stats. Identities = 135/167 (80%), Positives = 156/167 (93%), Gaps = 2/167 (1%) Query: 1 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKIAVLVLLNEMSRTGEGAVSLMERRRL 60 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKI+VLVLL+EMS+ + +SL+E+RRL Sbjct: 1 MASVHESLYFNPMMTNGVVHANVFGIKDWVTPYKISVLVLLSEMSKNTK--ISLVEKRRL 58 Query: 61 NQLLLPLLQGPDITLSKLYKLIEESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFS 120 N+ +LPLLQGPD+TLSKL K++EE CP +++SV IRIKLMAEGELKDMEQFFDDL+DSF+ Sbjct: 59 NKQILPLLQGPDMTLSKLIKIVEECCPNVSSSVHIRIKLMAEGELKDMEQFFDDLADSFT 118 Query: 121 GTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNGEK 167 GTEPEVHKTSVVGLFLRHMILAY+KLSFSQV+KLYT+LQQYFQ+ E Sbjct: 119 GTEPEVHKTSVVGLFLRHMILAYNKLSFSQVYKLYTSLQQYFQSDEN 165 >2I5G-A nrPDB Length = 325 Score = 31.9 bits (71), Expect = 0.98, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 10/114 (8%) Query: 281 LILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCL 340 L+ TG + G G+GR + A +N + C H + + + + ES VC Sbjct: 125 LVGTGCYERDGGLSGFGREI-VAEMNRVGIMCDLSH-----VGSKTSEEVILESKKPVCY 178 Query: 341 QHCL-SWLYVLGQKRSDSYV--LLEHSVKKAVHFGLPYLASLGIQSLVQQRAFA 391 HCL S L + +SD + + +H V P+L GI S + A A Sbjct: 179 SHCLPSGLKEHPRNKSDEELKFIADHGGFVGVTMFAPFLKK-GIDSTIDDYAEA 231 >1RX0-A nrPDB Length = 393 Score = 30.7 bits (68), Expect = 2.6, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 455 NAGVQQNNTESFAVALCHLAELHAEQGCFAAASEVLK 491 NA V AVALC +A+L A CFA ++ L+ Sbjct: 313 NAAVALQEERKDAVALCSMAKLFATDECFAICNQALQ 349 >6FK4-A nrPDB Length = 258 Score = 30.3 bits (67), Expect = 3.0, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%) Query: 322 LALQEAIRIAQESNDHVCLQ----HCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLPYL 376 L LQE +++ Q+ LQ HC+ W GQK + ++ SV + VHFGLP L Sbjct: 32 LVLQE-LKLDQDKFPAAALQMMGWHCV-WS---GQKTYNGVAIVSRSVPQDVHFGLPAL 85 >5A2X-A nrPDB Length = 555 Score = 30.3 bits (67), Expect = 3.2, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%) Query: 161 YFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQA 220 YFQ+ E+ D E+++R + +++ E L+ + R + C L++K+ +LS Sbjct: 19 YFQSMAGGA-EETDAEVSARKKTFTEVQTERLEQADRSVLIKCPSKLNEKKLLQYLSSHG 77 Query: 221 SL-----LKNDETKALTPASLQKELNNLLKFN--PDFAEAHYLSYLNNL 262 + +N AL S + + +L P AE H + Y + L Sbjct: 78 KIDNYFFFENRGIHALIEFSEKSSVASLQAVTGIPKAAEHHVVPYKSRL 126 >4A5W-B nrPDB Length = 913 Score = 30.3 bits (67), Expect = 3.4, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 118 SFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNGEKKTVEDADMEL 177 +F+ ++H + V L H+ L Y+ +S++F + YF +G V D + Sbjct: 303 NFTTKAKDLHLSDVFLKALNHLPLEYNSALYSRIFDDFGT--HYFTSGSLGGVYDLLYQF 360 Query: 178 TSRDEGERKMEKEELDVSVREE 199 +S + + +EE VR E Sbjct: 361 SSEELKNSGLTEEEAKHCVRIE 382 >5H11-A nrPDB Length = 509 Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 18/115 (15%) Query: 58 RRLNQLLLPLLQGPDITLSKLYKLIEESCPQLANSVQIRIK-LMAEGELKDMEQFFDDLS 116 +R+N+ + + P+ ++KL + I E N +Q +K + E D+EQ+ +L Sbjct: 66 QRVNKQVGEVFCSPETVMAKLIQSIFE------NKIQAHVKERLDETRNSDVEQYLKNLY 119 Query: 117 DSFSGTEPEVHKTSVVGL------FLRHMILAYSKLSFSQVFKLYTALQ-QYFQN 164 D ++ T K + L FL +I K FS + Y ++ QY QN Sbjct: 120 DLYTRTTALAAKLTDYNLGSDKHTFLSKLI----KNIFSCYLESYIDMERQYLQN 170 >1UP8-A nrPDB Length = 598 Score = 29.2 bits (64), Expect = 7.0, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 594 SSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILA 653 + P LP+ LA S E ++ + + A L + + M P+L Sbjct: 100 ARDPETGLPIWRSDLANSLELEVRGWENSS------AGLTFDLEGPDAQSIAMPPAPVLT 153 Query: 654 DGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLN 695 ++ + ++L+A + + +D PK AE ++ AI+ LN Sbjct: 154 SPELVAEIAELYLMALGREIEFSEFDSPKNAEYIQFAIDQLN 195 >6IGX-B nrPDB Length = 839 Score = 29.2 bits (64), Expect = 7.5, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 247 NPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAE 287 N DFA H++ L L++ DV +L FD+L+ G E Sbjct: 554 NQDFARKHFVLLLQVLQIDDVTIKISALKAIFDQLMTFGIE 594 >1TUO-A nrPDB Length = 464 Score = 29.2 bits (64), Expect = 7.9, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 681 PKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARLYH 722 P++A ALE A E L+ + YF + ++ + F LYH Sbjct: 141 PEEARALEGAYETLDLREAYFEALKAHLDLKALSGFSGVLYH 182 >6I44-A nrPDB Length = 627 Score = 28.8 bits (63), Expect = 8.0, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 99 LMAEGELKDMEQFFDD-LSDSFSGTEPEVHKTSVV 132 + + DME+ F L DS +GT P+VH+T V Sbjct: 51 FLPASSINDMEKRFGCFLKDSVTGTLPKVHRTGAV 85 >1P16-A nrPDB Length = 395 Score = 28.8 bits (63), Expect = 8.0, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 235 SLQKELNNLLKFNPDFAEA-------HYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAE 287 ++ K +N K NPD + + + L + DV S L H D LI T AE Sbjct: 169 NVMKPFDNFKKHNPDIVNSPEFPFKVGFKTMLTSYHADDVLSKMDKLFHASDGLIYTCAE 228 Query: 288 S 288 + Sbjct: 229 T 229 >3EUH-A nrPDB Length = 440 Score = 28.8 bits (63), Expect = 9.2, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 117 DSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNGEKKTVEDADME 176 D + G + VHK F+R I F+Q +L ++Q YF T +AD Sbjct: 272 DLWIGYDRHVHK------FIRTAIDMDKNRVFAQ--RLRQSVQTYFDEPWALTYANADRL 323 Query: 177 LTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEF 214 L RDE ++++R+EEV+ P + EF Sbjct: 324 LDMRDE----------EMALRDEEVTGELPEDLEYEEF 351 >1QHB-A nrPDB Length = 596 Score = 28.8 bits (63), Expect = 9.3, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 646 MAIEPILADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLN 695 M P+L ++ + ++L+A + + +D PK A + +AIE LN Sbjct: 144 MPPAPVLTSPELIAEMAELYLMALGRDIEFSEFDSPKNAAFIRSAIERLN 193 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.318 0.140 0.418 Lambda K H 0.267 0.0429 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,888,884 Number of Sequences: 36641 Number of extensions: 1494677 Number of successful extensions: 3969 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 29 Number of HSP's that attempted gapping in prelim test: 3945 Number of HSP's gapped (non-prelim): 49 length of query: 755 length of database: 10,336,785 effective HSP length: 104 effective length of query: 651 effective length of database: 6,526,121 effective search space: 4248504771 effective search space used: 4248504771 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.8 bits)