BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q9UJ70
         (344 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2CH6-A nrPDB                                                          707   0.0  
1ZC6-A nrPDB                                                           62   3e-10
2E2P-A nrPDB                                                           62   5e-10
6BVD-A nrPDB                                                           32   0.44 
5WYK-BB nrPDB                                                          30   2.2  
5UJU-A nrPDB                                                           29   2.9  
4HLN-A nrPDB                                                           28   6.7  

>2CH6-A nrPDB
          Length = 344

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/344 (100%), Positives = 344/344 (100%)

Query: 1   MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA 60
           MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA
Sbjct: 1   MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA 60

Query: 61  GVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGG 120
           GVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGG
Sbjct: 61  GVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGG 120

Query: 121 VVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHD 180
           VVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHD
Sbjct: 121 VVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHD 180

Query: 181 IGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGE 240
           IGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGE
Sbjct: 181 IGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGE 240

Query: 241 MLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFS 300
           MLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFS
Sbjct: 241 MLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFS 300

Query: 301 SFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
           SFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS
Sbjct: 301 SFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344


>1ZC6-A nrPDB
          Length = 305

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 20/262 (7%)

Query: 7   GVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLV 66
           GV+GGGT + + L + DG  LA A+G   +    G  K  + +   +  A ++AG+ P  
Sbjct: 15  GVDGGGTGTRIRLHASDGTPLAMAEG-GASALSQGIAKSWQAVLSTLEAAFQQAGL-PAA 72

Query: 67  PLRS--LGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLI 124
           P  +  +GL LSG       R    E   + P  +   L T      +       G+++ 
Sbjct: 73  PASACAIGLGLSGVHN----RQWAGEFESQAPGFARLSLATDGYTTLLGAHGGQPGIIVA 128

Query: 125 SGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYV 184
            GTGS    + PDGS    GGWG+  GDE S  W+  +A ++   ++D      H    +
Sbjct: 129 LGTGSIGEALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMALDGR----HSHSPL 184

Query: 185 KQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCR--KIAEGAQQGDPLSRYIFRKAGEML 242
            +A+  +       G    +     +   A F R   +   A + DP +  + R+AGE  
Sbjct: 185 TRAVLDFVG-----GDWQAMMAWNGRATPAQFARLAPLVLSAARVDPEADALLRQAGEDA 239

Query: 243 GRHIVAVLPEID-PVLFQGKIG 263
                A+ P+ + PV   G +G
Sbjct: 240 WAIARALDPQDELPVALCGGLG 261


>2E2P-A nrPDB
          Length = 299

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 26/253 (10%)

Query: 7   GVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVN-RAKRKAGVDPL 65
           GV+ GGT+++ +    +G  + E      N+  +G  + +E I E V   AK +A V   
Sbjct: 6   GVDAGGTKTKAVAYDCEGNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKGEADV--- 62

Query: 66  VPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSI-ATATPDGGVVLI 124
                +G+ ++G D     +   E        ++   +I  D   ++ A    + GVV+I
Sbjct: 63  -----VGMGVAGLDS----KFDWENFTPLASLIAPKVIIQHDGVIALFAETLGEPGVVVI 113

Query: 125 SGTGSNCRLINPDGSE-SGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGY 183
           +GTGS     N  G E    GG G ++ D+GSAYW+  +A++ V   +D LE     I Y
Sbjct: 114 AGTGSVVEGYN--GKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGLE--NKTILY 169

Query: 184 VKQAMFHYFQVPDRLGILTHLYRDFDKCRF---AGFCRKIAEGAQQGDPLSRYIFRKAGE 240
            K  +     V D   ++   Y     C+    A   + + E A +GD ++  I ++  E
Sbjct: 170 NK--VLKTINVKDLDELVMWSYT--SSCQIDLVASIAKAVDEAANEGDTVAMDILKQGAE 225

Query: 241 MLGRHIVAVLPEI 253
           +L    V +  +I
Sbjct: 226 LLASQAVYLARKI 238


>6BVD-A nrPDB
          Length = 436

 Score = 32.0 bits (71), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 38/116 (32%)

Query: 79  DQEDAGRILIEELRDRFPYLSESY-----LITTDAAGSIATATPDGGVV------LISGT 127
           + + AG+IL+EE+++  PYL  SY       T +   S      +G +V      +I G 
Sbjct: 101 NSKPAGQILLEEIKNAIPYLGNSYTQEEQFTTNNRTVSFNVKLANGNIVQQMANLIIWGP 160

Query: 128 GSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGY 183
           G       PD + +  GG                    I++    ++EA P+  G+
Sbjct: 161 G-------PDLTTNKTGG--------------------IIYSPYQSMEATPYKDGF 189


>5WYK-BB nrPDB
          Length = 943

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 8   VEGGGTRSEV--LLVSEDGKILAEADGLSTNHWLIGTDKCV 46
           +E  G R++V  + +S+D K+LA A   S   W I T KC+
Sbjct: 385 IELQGQRTDVRSIDISDDNKLLATASNGSLKIWNIKTHKCI 425


>5UJU-A nrPDB
          Length = 576

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 112 IATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSI 171
           +AT   DG +V         +LI+  GS    G W      +   Y       +IV DS 
Sbjct: 271 LATEPNDGALVQDLALRPEIKLIDFTGSTQN-GTWLERHAHQAQVYTEKAGVNQIVIDST 329

Query: 172 DNLEAAPHDIGY 183
           D+L+AA  +I +
Sbjct: 330 DDLKAAAKNIAF 341


>4HLN-A nrPDB
          Length = 633

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 9   EGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVER---INEMVNRAKRKAGVDPL 65
           EGG   +E LL S    +    +G+  N W   TDKC+     ++++  +AK KA +   
Sbjct: 373 EGGQGLNE-LLSSRKSVLNGIVNGIDINDWNPTTDKCLPHHYSVDDLSGKAKCKAELQ-- 429

Query: 66  VPLRSLGLSL 75
              R LGL +
Sbjct: 430 ---RELGLPV 436


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2CH6-A nrPDB                                                          545   e-156
1ZC6-A nrPDB                                                          271   2e-73
2E2P-A nrPDB                                                          261   3e-70

Sequences not found previously or not previously below threshold:

1Z5V-A nrPDB                                                           33   0.24 
3R8E-A nrPDB                                                           32   0.55 
2IFU-A nrPDB                                                           31   0.63 
3L0Q-A nrPDB                                                           30   0.98 
3DMF-A nrPDB                                                           30   1.7  
3VGK-A nrPDB                                                           30   1.8  
3V75-A nrPDB                                                           30   2.2  
1VHM-A nrPDB                                                           29   3.4  
2VSI-A nrPDB                                                           29   4.4  
5SVC-B nrPDB                                                           28   5.9  
1PGJ-A nrPDB                                                           28   6.9  
1YD8-G nrPDB                                                           28   7.1  
3O44-A nrPDB                                                           28   7.5  
1XEZ-A nrPDB                                                           28   7.9  


CONVERGED!
>2CH6-A nrPDB
          Length = 344

 Score =  545 bits (1405), Expect = e-156,   Method: Composition-based stats.
 Identities = 344/344 (100%), Positives = 344/344 (100%)

Query: 1   MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA 60
           MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA
Sbjct: 1   MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA 60

Query: 61  GVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGG 120
           GVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGG
Sbjct: 61  GVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGG 120

Query: 121 VVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHD 180
           VVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHD
Sbjct: 121 VVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHD 180

Query: 181 IGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGE 240
           IGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGE
Sbjct: 181 IGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGE 240

Query: 241 MLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFS 300
           MLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFS
Sbjct: 241 MLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFS 300

Query: 301 SFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
           SFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS
Sbjct: 301 SFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344


>1ZC6-A nrPDB
          Length = 305

 Score =  271 bits (694), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 20/262 (7%)

Query: 7   GVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLV 66
           GV+GGGT + + L + DG  LA A+G   +    G  K  + +   +  A ++AG+ P  
Sbjct: 15  GVDGGGTGTRIRLHASDGTPLAMAEG-GASALSQGIAKSWQAVLSTLEAAFQQAGL-PAA 72

Query: 67  PLRS--LGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLI 124
           P  +  +GL LSG       R    E   + P  +   L T      +       G+++ 
Sbjct: 73  PASACAIGLGLSGVHN----RQWAGEFESQAPGFARLSLATDGYTTLLGAHGGQPGIIVA 128

Query: 125 SGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYV 184
            GTGS    + PDGS    GGWG+  GDE S  W+  +A ++   ++D      H    +
Sbjct: 129 LGTGSIGEALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMALDGR----HSHSPL 184

Query: 185 KQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCR--KIAEGAQQGDPLSRYIFRKAGEML 242
            +A+  +       G    +     +   A F R   +   A + DP +  + R+AGE  
Sbjct: 185 TRAVLDFVG-----GDWQAMMAWNGRATPAQFARLAPLVLSAARVDPEADALLRQAGEDA 239

Query: 243 GRHIVAVLPEID-PVLFQGKIG 263
                A+ P+ + PV   G +G
Sbjct: 240 WAIARALDPQDELPVALCGGLG 261


>2E2P-A nrPDB
          Length = 299

 Score =  261 bits (666), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 28/264 (10%)

Query: 7   GVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVN-RAKRKAGVDPL 65
           GV+ GGT+++ +    +G  + E      N+  +G  + +E I E V   AK +A V   
Sbjct: 6   GVDAGGTKTKAVAYDCEGNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKGEADV--- 62

Query: 66  VPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSI-ATATPDGGVVLI 124
                +G+ ++G D     +   E        ++   +I  D   ++ A    + GVV+I
Sbjct: 63  -----VGMGVAGLDS----KFDWENFTPLASLIAPKVIIQHDGVIALFAETLGEPGVVVI 113

Query: 125 SGTGSNCRLINPDGSE-SGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGY 183
           +GTGS     N  G E    GG G ++ D+GSAYW+  +A++ V   +D LE     I Y
Sbjct: 114 AGTGSVVEGYN--GKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGLE--NKTILY 169

Query: 184 VKQAMFHYFQVPDRLGILTHLYRDFDKCRF---AGFCRKIAEGAQQGDPLSRYIFRKAGE 240
            K  +     V D   ++   Y     C+    A   + + E A +GD ++  I ++  E
Sbjct: 170 NK--VLKTINVKDLDELVMWSYT--SSCQIDLVASIAKAVDEAANEGDTVAMDILKQGAE 225

Query: 241 MLGRHIVAVLPEI--DPVLFQGKI 262
           +L    V +  +I  + V  +G +
Sbjct: 226 LLASQAVYLARKIGTNKVYLKGGM 249


>1Z5V-A nrPDB
          Length = 474

 Score = 32.8 bits (73), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%)

Query: 17  VLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLS 76
             L + +   L+E  G + N+W  G  +  +   ++ +   R+A     +    L  S++
Sbjct: 83  AKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIA 142

Query: 77  GGDQEDAGRILIEELRDRFP 96
           GG     G  L+E L DR+P
Sbjct: 143 GGTGSGLGSYLLERLNDRYP 162


>3R8E-A nrPDB
          Length = 321

 Score = 31.6 bits (70), Expect = 0.55,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 99/279 (35%), Gaps = 54/279 (19%)

Query: 7   GVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAG--VDP 64
           G++ GGT  +  LV+ +G+ +  A    T  W+ G           V   K + G  +  
Sbjct: 23  GIDVGGTSVKFGLVTPEGE-IQNATRFMTADWVNGIG--------FVESMKLEIGNFLKQ 73

Query: 65  LVPLRSLGLSLSGGDQEDAGRI-------------LIEELRDRFPYLSESYLITTDAAGS 111
              ++ +G+   G    D  ++             ++E LR  FP++    +       +
Sbjct: 74  YPIVKGVGIGWPGLVSLDRTKVILLPNIPSVVNVPIVEILRSEFPHIHFK-IENDAKCAA 132

Query: 112 IATAT------PDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVK 165
           +              ++L  GTG     +  +G     GG G       +   + H  + 
Sbjct: 133 LGEYYFGENKRMQTFILLALGTG-VGSGVMMNGK-LFIGGRG-------NGTEVGH-MLT 182

Query: 166 IVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQ 225
               S++N     H I Y  + +         L  +  L             + IA+ A 
Sbjct: 183 TRGKSLENQVGINHLIAYTHEQLALDVAKKSSLHTIAELSP-----------KVIADHAA 231

Query: 226 QGDPLSRYIFRKAGEMLGRHIVAVLPEID--PVLFQGKI 262
           QGD L+  ++   G ++G  +V ++  +D   +L  G I
Sbjct: 232 QGDALALAVWADIGTIIGESLVNIVRVMDLNNILLGGGI 270


>2IFU-A nrPDB
          Length = 307

 Score = 31.2 bits (69), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 160 AHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRK 219
           A +A +     + +L+  P  + Y+++A   Y +          L R           + 
Sbjct: 75  AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKA 134

Query: 220 I---AEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPE 252
           +    + A   +   R   R+A E++G+    ++ +
Sbjct: 135 VHLYQQAAAVFENEER--LRQAAELIGKASRLLVRQ 168


>3L0Q-A nrPDB
          Length = 554

 Score = 30.5 bits (67), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 1  MAAIYGGVEGGGTRSEVLLVSEDGKILAEAD------GLSTNHWLIGTDKCVERINEMVN 54
          +A+ + GV+ G   +   +    G+++ +A           +     ++   + +   V 
Sbjct: 3  LASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVR 62

Query: 55 RAKRKAGVDPL 65
           A  +A ++P+
Sbjct: 63 DAVNQADINPI 73


>3DMF-A nrPDB
          Length = 381

 Score = 29.7 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 5/147 (3%)

Query: 126 GTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVK 185
           GT      +         GG  ++ GD+   +    +  +    ++          G  +
Sbjct: 114 GTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEAR----ALLGYGVVVRREGPYR 169

Query: 186 QAMF-HYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGR 244
            A+     + P    +            +          A + DP S  +     E LG 
Sbjct: 170 VALLEKEKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGP 229

Query: 245 HIVAVLPEIDPVLFQGKIGLPILCVGS 271
             V     +D     G + LP+  +G+
Sbjct: 230 EGVRGRQVLDLGAGYGALTLPLARMGA 256


>3VGK-A nrPDB
          Length = 321

 Score = 29.7 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 218 RKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGL 264
           + I+E A+QGDP++   FR+     G  +  +    DP  F    G+
Sbjct: 216 KHISEAARQGDPVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGV 262


>3V75-A nrPDB
          Length = 301

 Score = 29.7 bits (65), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 202 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFR-KAGEMLGRHIVAVLPEIDPVLFQG 260
           +  +  F     A   + +AE    G  +     R   G  +  +  A L +  P+    
Sbjct: 86  SAFFERFGSRGVAVLEKTVAEARAAGALVVMDAKRGDIGSTMAAYAEAFLRKDSPLFSDA 145

Query: 261 KIGLPILCVGSVWKSWELLKEG----FLLALT---QGREIQ 294
               P L  GS+  + EL +E     F+LALT   +G E+Q
Sbjct: 146 LTVSPYLGYGSLRPAVELARESGAGLFVLALTSNPEGGEVQ 186


>1VHM-A nrPDB
          Length = 195

 Score = 28.9 bits (63), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 52  MVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLS--ESYLITTDAA 109
             + A     V PLV    + + +   D    GR   E+ +     ++  E  L TTD  
Sbjct: 119 ACDAASNSEIVLPLVVKNQI-IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 177

Query: 110 GSIATATPDGG 120
              A+   +GG
Sbjct: 178 KFFASVAGEGG 188


>2VSI-A nrPDB
          Length = 236

 Score = 28.5 bits (62), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 4   IYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIG--TDKCVERINEMVNR---AKR 58
           IY G+  GGT + + + +   + L   D     H +     +  +E+I   V+    +  
Sbjct: 3   IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHA 62

Query: 59  KAGVDPLVPL--RSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAA 109
           +  VD  +PL    + ++  G D+  + + +IE +    P   E  ++T D+ 
Sbjct: 63  EDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSV 115


>5SVC-B nrPDB
          Length = 727

 Score = 28.2 bits (61), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 7  GVEGGGTRSEVLLVSEDGKI-LAEADGLSTN 36
          G++ GGT ++   V +DG   + +A     N
Sbjct: 25 GIDAGGTMTDTFFVDQDGDFVVGKAQSTPQN 55


>1PGJ-A nrPDB
          Length = 478

 Score = 27.8 bits (60), Expect = 6.9,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 34/169 (20%)

Query: 58  RKAGVDPLVPLRSLGLSLSGGDQ---------EDAGRILIEELRDRFPYLSESYLITTDA 108
           R+A       LR LG+ +SGG++               + EE+R      +       D 
Sbjct: 112 RRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKA---DDG 168

Query: 109 AGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGH---------MMGDEGSAY-- 157
              +             G GS  ++ +  G  +    WG          +  DE +A   
Sbjct: 169 RPCVTMNGS-------GGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE 221

Query: 158 -WIAHQAVK--IVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 203
            W +   +K  ++  SI    A   D  Y+ + +          G+ + 
Sbjct: 222 DWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKG-TGLWSA 269


>1YD8-G nrPDB
          Length = 98

 Score = 27.8 bits (60), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 160 AHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCR 212
               ++ V   +  LE   +++  + + + HY Q     G    +   FD+C 
Sbjct: 1   GAMGIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCE 53


>3O44-A nrPDB
          Length = 593

 Score = 27.8 bits (60), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 109 AGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVF 168
           AG+   A      +L+ G G +   ++  G +S       +    G   +   Q V + F
Sbjct: 489 AGAAIDALGSASDLLVGGNGGSLSSVDLSGVKS-------ITATSGDFQYGGQQLVALTF 541

Query: 169 DSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILT 202
              D  +       YV  A    F +PD   I  
Sbjct: 542 TYQDGRQQTVGSKAYVTNAHEDRFDLPDAAKITQ 575


>1XEZ-A nrPDB
          Length = 721

 Score = 27.8 bits (60), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 109 AGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVF 168
           AG+   A      +L+ G G +   ++  G +S       +    G   +   Q V + F
Sbjct: 617 AGAAIDALGSASDLLVGGNGGSLSSVDLSGVKS-------ITATSGDFQYGGQQLVALTF 669

Query: 169 DSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILT 202
              D  +       YV  A    F +PD   I  
Sbjct: 670 TYQDGRQQTVGSKAYVTNAHEDRFDLPDAAKITQ 703


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.318    0.129    0.344 

Lambda     K      H
   0.267   0.0395    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,955,906
Number of Sequences: 36641
Number of extensions: 513559
Number of successful extensions: 1478
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1444
Number of HSP's gapped (non-prelim): 45
length of query: 344
length of database: 10,336,785
effective HSP length: 98
effective length of query: 246
effective length of database: 6,745,967
effective search space: 1659507882
effective search space used: 1659507882
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.4 bits)