BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q9UJ37
         (374 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6APJ-A nrPDB                                                          772   0.0  
2WNF-A nrPDB                                                           94   1e-19
5BO8-A nrPDB                                                           69   3e-12
5BO9-A nrPDB                                                           69   3e-12
4MPS-A nrPDB                                                           62   3e-10
4JS2-A nrPDB                                                           62   4e-10
2M2A-A nrPDB                                                           31   0.97 
4DT4-A nrPDB                                                           31   1.1  
5CJH-A nrPDB                                                           28   5.9  
1WL1-A nrPDB                                                           28   6.1  

>6APJ-A nrPDB
          Length = 374

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/374 (100%), Positives = 374/374 (100%)

Query: 1   MGLPRGSFFWLLLLLTAACSGLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWT 60
           MGLPRGSFFWLLLLLTAACSGLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWT
Sbjct: 1   MGLPRGSFFWLLLLLTAACSGLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWT 60

Query: 61  GKGQACRHLLHLAIQRHPHFRGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQ 120
           GKGQACRHLLHLAIQRHPHFRGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQ
Sbjct: 61  GKGQACRHLLHLAIQRHPHFRGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQ 120

Query: 121 VIASTLSLLNGSESAKLFAPPRDTPPKCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNG 180
           VIASTLSLLNGSESAKLFAPPRDTPPKCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNG
Sbjct: 121 VIASTLSLLNGSESAKLFAPPRDTPPKCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNG 180

Query: 181 AVIKGFERDVGTKTSFYGFTVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVML 240
           AVIKGFERDVGTKTSFYGFTVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVML
Sbjct: 181 AVIKGFERDVGTKTSFYGFTVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVML 240

Query: 241 RSAILGVPVPEGLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDL 300
           RSAILGVPVPEGLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDL
Sbjct: 241 RSAILGVPVPEGLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDL 300

Query: 301 YMPSTGALMLLTALHTCDQVSAYGFITSNYWKFSDHYFERKMKPLIFYANHDLSLEAALW 360
           YMPSTGALMLLTALHTCDQVSAYGFITSNYWKFSDHYFERKMKPLIFYANHDLSLEAALW
Sbjct: 301 YMPSTGALMLLTALHTCDQVSAYGFITSNYWKFSDHYFERKMKPLIFYANHDLSLEAALW 360

Query: 361 RDLHKAGILQLYQR 374
           RDLHKAGILQLYQR
Sbjct: 361 RDLHKAGILQLYQR 374


>2WNF-A nrPDB
          Length = 298

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 85/185 (45%), Gaps = 41/185 (22%)

Query: 148 CIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNS 207
           C RCAVVGN G L  S  GP ID+HD+V R+N A  +GFE DVG+KT+ +     + +  
Sbjct: 97  CRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTHHFVYPESFRE- 155

Query: 208 LVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILG-------VPVPEGLDKGDRPH 260
                          Q++  I +P    D   + SA          VPVP  +       
Sbjct: 156 -------------LAQEVSMILVPFKTTDLEWVISATTTGRISHTYVPVPAKI------- 195

Query: 261 AYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDLYMPSTGALMLLTALHTCDQV 320
                +    K  + HP FI Y+ +R+L+        G    PSTG L ++ +LH CD+V
Sbjct: 196 -----KVKKEKILIYHPAFIKYVFDRWLQ--------GHGRYPSTGILSVIFSLHICDEV 242

Query: 321 SAYGF 325
             YGF
Sbjct: 243 DLYGF 247


>5BO8-A nrPDB
          Length = 343

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 97/236 (41%), Gaps = 38/236 (16%)

Query: 151 CAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLVS 210
           CAVVGN GIL GS+ G  ID  D+VFR N A  + F+RDVG KT+   F  + ++     
Sbjct: 125 CAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILE----K 180

Query: 211 YWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHA---YFGPEA 267
           Y+N   T     QD    F+         L  AIL +P                +F    
Sbjct: 181 YYNNLLTI----QDRNNFFL-----SLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHR 231

Query: 268 SASKFKLLHPDFISYLTERFLKSKLINTHFGDLYMPSTGALMLLTALHTCDQVSAYGFIT 327
              K +L  P  I     R+ K+K    H     + STG LM   A   C+++  YGF  
Sbjct: 232 GQLKVQLAWPGNIMQHVNRYWKNK----HLSPKRL-STGILMYTLASAICEEIHLYGF-- 284

Query: 328 SNYWKFS----------DHYFERKMKPLI--FYANHDLSLEAALWRDLHKAGILQL 371
              W F            HY+++K       +  +H L  E  L   +H  G+ +L
Sbjct: 285 ---WPFGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKL 337


>5BO9-A nrPDB
          Length = 323

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 97/236 (41%), Gaps = 38/236 (16%)

Query: 151 CAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLVS 210
           CAVVGN GIL GS+ G  ID  D+VFR N A  + F+RDVG KT+   F  + ++     
Sbjct: 105 CAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILE----K 160

Query: 211 YWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHA---YFGPEA 267
           Y+N   T     QD    F+         L  AIL +P                +F    
Sbjct: 161 YYNNLLTI----QDRNNFFL-----SLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHR 211

Query: 268 SASKFKLLHPDFISYLTERFLKSKLINTHFGDLYMPSTGALMLLTALHTCDQVSAYGFIT 327
              K +L  P  I     R+ K+K    H     + STG LM   A   C+++  YGF  
Sbjct: 212 GQLKVQLAWPGNIMQHVNRYWKNK----HLSPKRL-STGILMYTLASAICEEIHLYGF-- 264

Query: 328 SNYWKFS----------DHYFERKMKPLI--FYANHDLSLEAALWRDLHKAGILQL 371
              W F            HY+++K       +  +H L  E  L   +H  G+ +L
Sbjct: 265 ---WPFGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKL 317


>4MPS-A nrPDB
          Length = 310

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 21/182 (11%)

Query: 150 RCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLV 209
           RCAVV + G L  S+ G  ID HD V R NGA    F++DVG+KT     T+  M + LV
Sbjct: 87  RCAVVSSAGSLKNSQLGREIDNHDAVLRFNGAPTDNFQQDVGSKT-----TIRLMNSQLV 141

Query: 210 SYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHAYFGPEASA 269
           +            + +  ++ PS           +    +P+   K D  + +F    S 
Sbjct: 142 TTEKRFLKDSLYTEGILIVWDPS-----------VYHADIPKWYQKPD--YNFFETYKSY 188

Query: 270 SKFKLLHPDFISYLTERFLKSKLINTHFGDLYM---PSTGALMLLTALHTCDQVSAYGFI 326
            +     P +I      +    +I     DL     PS+G L ++  +  CDQV  Y F+
Sbjct: 189 RRLNPSQPFYILKPQMPWELWDIIQEISADLIQPNPPSSGMLGIIIMMTLCDQVDIYEFL 248

Query: 327 TS 328
            S
Sbjct: 249 PS 250


>4JS2-A nrPDB
          Length = 318

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 35/201 (17%)

Query: 150 RCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLV 209
           RCAVV + G L  S+ G  ID HD V R NGA    F++DVGTKT     T+  M + LV
Sbjct: 95  RCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKT-----TIRLMNSQLV 149

Query: 210 SYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHAYFGPE--- 266
           +            + +  ++ PS                    +   D P  Y  P+   
Sbjct: 150 TTEKRFLKDSLYNEGILIVWDPS--------------------VYHSDIPKWYQNPDYNF 189

Query: 267 -ASASKFKLLHPDFISYLTERFLKSKL------INTHFGDLYMPSTGALMLLTALHTCDQ 319
             +   ++ LHP+   Y+ +  +  +L      I+        PS+G L ++  +  CDQ
Sbjct: 190 FNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQ 249

Query: 320 VSAYGFITSNYWKFSDHYFER 340
           V  Y F+ S       +Y+++
Sbjct: 250 VDIYEFLPSKRKTDVCYYYQK 270


>2M2A-A nrPDB
          Length = 148

 Score = 30.8 bits (68), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 252 GLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDLYMPSTGALMLL 311
           GL  GD+      P+A+   F +  PD I Y + R          F D   P  GA+ML 
Sbjct: 54  GLKVGDKTTFSLEPDAA---FGVPSPDLIQYFSRR---------EFMDAGEPEIGAIMLF 101

Query: 312 TAL 314
           TA+
Sbjct: 102 TAM 104


>4DT4-A nrPDB
          Length = 169

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 252 GLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDLYMPSTGALMLL 311
           GL  GD+      P+A+   F +  PD I Y + R          F D   P  GA+ML 
Sbjct: 74  GLKVGDKTTFSLEPDAA---FGVPSPDLIQYFSRR---------EFMDAGEPEIGAIMLF 121

Query: 312 TAL 314
           TA+
Sbjct: 122 TAM 124


>5CJH-A nrPDB
          Length = 764

 Score = 28.1 bits (61), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 188 RDVGTKT-SFYGFTVNTMKNSLVSYWNLGFTSVPQGQDLQY 227
            ++G KT  F G   +T ++    YW    T VPQG D++Y
Sbjct: 185 ENMGFKTLGFGGGRADTWQSDEAVYWGAETTFVPQGNDVRY 225


>1WL1-A nrPDB
          Length = 299

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 276 HPDFISYLTERFLKSK-LINTHFGDLYMPSTGALMLLTALHTCDQV 320
           H D I     RF + K  IN  +GD    + G L+L++A HT +++
Sbjct: 80  HDDVID--GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEI 123


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6APJ-A nrPDB                                                          637   0.0  
5BO9-A nrPDB                                                          238   2e-63
5BO8-A nrPDB                                                          238   3e-63
4MPS-A nrPDB                                                          227   5e-60
4JS2-A nrPDB                                                          222   2e-58
2WNF-A nrPDB                                                          185   3e-47

Sequences not found previously or not previously below threshold:

1M65-A nrPDB                                                           29   2.5  
3T14-A nrPDB                                                           29   3.1  
1TUY-A nrPDB                                                           28   5.4  


CONVERGED!
>6APJ-A nrPDB
          Length = 374

 Score =  637 bits (1642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/374 (100%), Positives = 374/374 (100%)

Query: 1   MGLPRGSFFWLLLLLTAACSGLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWT 60
           MGLPRGSFFWLLLLLTAACSGLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWT
Sbjct: 1   MGLPRGSFFWLLLLLTAACSGLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWT 60

Query: 61  GKGQACRHLLHLAIQRHPHFRGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQ 120
           GKGQACRHLLHLAIQRHPHFRGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQ
Sbjct: 61  GKGQACRHLLHLAIQRHPHFRGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQ 120

Query: 121 VIASTLSLLNGSESAKLFAPPRDTPPKCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNG 180
           VIASTLSLLNGSESAKLFAPPRDTPPKCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNG
Sbjct: 121 VIASTLSLLNGSESAKLFAPPRDTPPKCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNG 180

Query: 181 AVIKGFERDVGTKTSFYGFTVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVML 240
           AVIKGFERDVGTKTSFYGFTVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVML
Sbjct: 181 AVIKGFERDVGTKTSFYGFTVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVML 240

Query: 241 RSAILGVPVPEGLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDL 300
           RSAILGVPVPEGLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDL
Sbjct: 241 RSAILGVPVPEGLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDL 300

Query: 301 YMPSTGALMLLTALHTCDQVSAYGFITSNYWKFSDHYFERKMKPLIFYANHDLSLEAALW 360
           YMPSTGALMLLTALHTCDQVSAYGFITSNYWKFSDHYFERKMKPLIFYANHDLSLEAALW
Sbjct: 301 YMPSTGALMLLTALHTCDQVSAYGFITSNYWKFSDHYFERKMKPLIFYANHDLSLEAALW 360

Query: 361 RDLHKAGILQLYQR 374
           RDLHKAGILQLYQR
Sbjct: 361 RDLHKAGILQLYQR 374


>5BO9-A nrPDB
          Length = 323

 Score =  238 bits (608), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 97/231 (41%), Gaps = 28/231 (12%)

Query: 151 CAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLVS 210
           CAVVGN GIL GS+ G  ID  D+VFR N A  + F+RDVG KT+   F  + ++     
Sbjct: 105 CAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILE----K 160

Query: 211 YWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHA---YFGPEA 267
           Y+N   T     QD    F+         L  AIL +P                +F    
Sbjct: 161 YYNNLLTI----QDRNNFFL-----SLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHR 211

Query: 268 SASKFKLLHPDFISYLTERFLKSKLINTHFGDLYMPSTGALMLLTALHTCDQVSAYGFIT 327
              K +L  P  I     R+ K+K    H     + STG LM   A   C+++  YGF  
Sbjct: 212 GQLKVQLAWPGNIMQHVNRYWKNK----HLSPKRL-STGILMYTLASAICEEIHLYGFWP 266

Query: 328 SNYWKFS-----DHYFERKMKPLI--FYANHDLSLEAALWRDLHKAGILQL 371
             +   +      HY+++K       +  +H L  E  L   +H  G+ +L
Sbjct: 267 FGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKL 317


>5BO8-A nrPDB
          Length = 343

 Score =  238 bits (607), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 97/231 (41%), Gaps = 28/231 (12%)

Query: 151 CAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLVS 210
           CAVVGN GIL GS+ G  ID  D+VFR N A  + F+RDVG KT+   F  + ++     
Sbjct: 125 CAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILE----K 180

Query: 211 YWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHA---YFGPEA 267
           Y+N   T     QD    F+         L  AIL +P                +F    
Sbjct: 181 YYNNLLTI----QDRNNFFL-----SLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHR 231

Query: 268 SASKFKLLHPDFISYLTERFLKSKLINTHFGDLYMPSTGALMLLTALHTCDQVSAYGFIT 327
              K +L  P  I     R+ K+K    H     + STG LM   A   C+++  YGF  
Sbjct: 232 GQLKVQLAWPGNIMQHVNRYWKNK----HLSPKRL-STGILMYTLASAICEEIHLYGFWP 286

Query: 328 SNYWKFS-----DHYFERKMKPLI--FYANHDLSLEAALWRDLHKAGILQL 371
             +   +      HY+++K       +  +H L  E  L   +H  G+ +L
Sbjct: 287 FGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKL 337


>4MPS-A nrPDB
          Length = 310

 Score =  227 bits (579), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 21/194 (10%)

Query: 150 RCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLV 209
           RCAVV + G L  S+ G  ID HD V R NGA    F++DVG+KT     T+  M + LV
Sbjct: 87  RCAVVSSAGSLKNSQLGREIDNHDAVLRFNGAPTDNFQQDVGSKT-----TIRLMNSQLV 141

Query: 210 SYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHAYFGPEASA 269
           +            + +  ++ PS           +    +P+   K D  + +F    S 
Sbjct: 142 TTEKRFLKDSLYTEGILIVWDPS-----------VYHADIPKWYQKPD--YNFFETYKSY 188

Query: 270 SKFKLLHPDFISYLTERFLKSKLINTHFGD---LYMPSTGALMLLTALHTCDQVSAYGFI 326
            +     P +I      +    +I     D      PS+G L ++  +  CDQV  Y F+
Sbjct: 189 RRLNPSQPFYILKPQMPWELWDIIQEISADLIQPNPPSSGMLGIIIMMTLCDQVDIYEFL 248

Query: 327 TSNYWKFSDHYFER 340
            S       +Y ++
Sbjct: 249 PSKRKTDVCYYHQK 262


>4JS2-A nrPDB
          Length = 318

 Score =  222 bits (565), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 21/194 (10%)

Query: 150 RCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLV 209
           RCAVV + G L  S+ G  ID HD V R NGA    F++DVGTKT     T+  M + LV
Sbjct: 95  RCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKT-----TIRLMNSQLV 149

Query: 210 SYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHAYFGPEASA 269
           +            + +  ++ PS           +    +P+     D  + +F    + 
Sbjct: 150 TTEKRFLKDSLYNEGILIVWDPS-----------VYHSDIPKWYQNPD--YNFFNNYKTY 196

Query: 270 SKFKLLHPDFISYLTERFLKSKL---INTHFGDLYMPSTGALMLLTALHTCDQVSAYGFI 326
            K     P +I      +    +   I+        PS+G L ++  +  CDQV  Y F+
Sbjct: 197 RKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFL 256

Query: 327 TSNYWKFSDHYFER 340
            S       +Y+++
Sbjct: 257 PSKRKTDVCYYYQK 270


>2WNF-A nrPDB
          Length = 298

 Score =  185 bits (469), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 91/199 (45%), Gaps = 42/199 (21%)

Query: 148 CIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNS 207
           C RCAVVGN G L  S  GP ID+HD+V R+N A  +GFE DVG+KT+ +     + +  
Sbjct: 97  CRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTHHFVYPESFRE- 155

Query: 208 LVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILG-------VPVPEGLDKGDRPH 260
                          Q++  I +P    D   + SA          VPVP  +       
Sbjct: 156 -------------LAQEVSMILVPFKTTDLEWVISATTTGRISHTYVPVPAKI------- 195

Query: 261 AYFGPEASASKFKLLHPDFISYLTERFLKSKLINTHFGDLYMPSTGALMLLTALHTCDQV 320
                +    K  + HP FI Y+ +R+L+        G    PSTG L ++ +LH CD+V
Sbjct: 196 -----KVKKEKILIYHPAFIKYVFDRWLQ--------GHGRYPSTGILSVIFSLHICDEV 242

Query: 321 SAYGFITSNYWKFSDHYFE 339
             YGF  ++      HY+E
Sbjct: 243 DLYGF-GADSKGNWHHYWE 260


>1M65-A nrPDB
          Length = 245

 Score = 29.3 bits (64), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 26/76 (34%)

Query: 233 DIRDYVMLRSAILGVPVPEGLDKGDRPHAYFGPEASASKFKLLHPDFISYLTERFLKSKL 292
            + D + L  A    PV    DK     A     AS +   + HP    Y  +    ++ 
Sbjct: 88  KMFDSLDLIIAGFHEPVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEA 147

Query: 293 INTHFGDLYMPSTGAL 308
              H   L + ++  L
Sbjct: 148 AAKHQVALEINNSSFL 163


>3T14-A nrPDB
          Length = 437

 Score = 29.3 bits (64), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 12/50 (24%)

Query: 321 SAYGFITSNYWKFS------------DHYFERKMKPLIFYANHDLSLEAA 358
             + F+ SN W                HY ERK    I  +   +  EA 
Sbjct: 40  DYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQ 89


>1TUY-A nrPDB
          Length = 399

 Score = 28.2 bits (61), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 112 YGWRGLSHQVIASTLSLLNGSESAKLFAPPRDTPPKCIRCAVVGNGGILNGSRQGPNIDA 171
           YG+ G SH+ +A   +L+ G        P  +T  K I C  +GNG  +     G +++ 
Sbjct: 177 YGFHGTSHKYVAERAALMLGK-------PAEET--KIITCH-LGNGSSITAVEGGKSVET 226

Query: 172 HDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLVSY 211
                 +    ++G        +         M+   ++ 
Sbjct: 227 S-----MGFTPLEGLAMGTRCGSIDPAIVPFLMEKEGLTT 261


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.319    0.127    0.370 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,623,677
Number of Sequences: 36641
Number of extensions: 593362
Number of successful extensions: 1681
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1633
Number of HSP's gapped (non-prelim): 25
length of query: 374
length of database: 10,336,785
effective HSP length: 99
effective length of query: 275
effective length of database: 6,709,326
effective search space: 1845064650
effective search space used: 1845064650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 60 (27.8 bits)