BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9UHV8 (139 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6A66-A nrPDB 285 3e-78 6A1S-A nrPDB 150 2e-37 3ZXF-A nrPDB 65 1e-11 4Y26-A nrPDB 62 6e-11 1QMJ-A nrPDB 42 8e-05 5NM1-A nrPDB 39 6e-04 1SLC-A nrPDB 39 8e-04 5JP5-A nrPDB 38 0.001 3VV1-A nrPDB 38 0.002 3M2M-A nrPDB 37 0.002 4Y1X-A nrPDB 35 0.010 1W6P-A nrPDB 35 0.012 6E20-A nrPDB 28 1.9 4GBT-A nrPDB 27 2.0 3UJZ-A nrPDB 27 2.1 3ODP-A nrPDB 26 5.1 4B2G-A nrPDB 26 6.1 5JMD-A nrPDB 26 6.5 3SAQ-A nrPDB 25 7.5 5XWM-A nrPDB 25 8.8 >6A66-A nrPDB Length = 142 Score = 285 bits (730), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 138/139 (99%), Positives = 138/139 (99%) Query: 1 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGN 60 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAF FRVHFGN Sbjct: 4 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFHFRVHFGN 63 Query: 61 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF 120 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF Sbjct: 64 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF 123 Query: 121 VKMVQVSRDISLTSVCVCN 139 VKMVQVSRDISLTSVCVCN Sbjct: 124 VKMVQVSRDISLTSVCVCN 142 >6A1S-A nrPDB Length = 145 Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/138 (55%), Positives = 93/138 (67%) Query: 1 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGN 60 MS LPVPY SLS GS V IKG P+ F+N P LQVDF+T+M E+SDI F F+V FG Sbjct: 4 MSLLPVPYTEAASLSTGSTVTIKGRPLACFLNAPYLQVDFHTEMKEESDIVFHFQVCFGR 63 Query: 61 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF 120 VVMN RE+G W + + +PF+DG++FEL I V ++Y++ VNG Y F HRI P Sbjct: 64 RVVMNSREYGAWKQQVESKNMPFQDGQEFELSISVLPDKYQVMVNGQSSYTFDHRIKPEA 123 Query: 121 VKMVQVSRDISLTSVCVC 138 VKMVQV RDISLT V Sbjct: 124 VKMVQVWRDISLTKFNVS 141 >3ZXF-A nrPDB Length = 138 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%) Query: 1 MSSLPVPYKLPVSLSVGSCVIIKG-TPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFG 59 MS++P LP + G+ + I+G P N + V+ ++ SD A F Sbjct: 3 MSNVPHKSSLPEGIRPGTVLRIRGLVPP----NASRFHVNLLCGEEQGSDAALHFNPRLD 58 Query: 60 -NHVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPP 118 + VV N +E G W EE VPF+ G+ FE+ I + ++ V + + F HR+P Sbjct: 59 TSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPL 118 Query: 119 SFVKMVQVSRDISLTSVCV 137 + V++V+V D+ L SV + Sbjct: 119 ARVRLVEVGGDVQLDSVRI 137 >4Y26-A nrPDB Length = 154 Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 8/136 (5%) Query: 6 VPYK--LPVSLSVGSCVIIKG-TPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFG-NH 61 VP+K LP + G+ + I+G P N + V+ ++ SD A F + Sbjct: 22 VPHKSSLPEGIRPGTVLRIRGLVPP----NASRFHVNLLCGEEQGSDAALHFNPRLDTSE 77 Query: 62 VVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFV 121 VV N +E G W EE VPF+ G+ FE+ I + ++ V + + F HR+P + V Sbjct: 78 VVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARV 137 Query: 122 KMVQVSRDISLTSVCV 137 ++V+V D+ L SV + Sbjct: 138 RLVEVGGDVQLDSVRI 153 >1QMJ-A nrPDB Length = 132 Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 14/125 (11%) Query: 17 GSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAF-----RFRVHFG-NHVVMNRREFG 70 G CV +KG ++D + F ++ +DS RF H N VV N +E G Sbjct: 13 GECVKVKG----KILSDAK---GFSVNVGKDSSTLMLHFNPRFDCHGDVNTVVCNSKEDG 65 Query: 71 IWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDI 130 W E+ PF+ G + E+CI E ++KV + + F +R+ ++ + V D Sbjct: 66 TWGEEDRKADFPFQQGDKVEICISFDAAEVKVKVPEVE-FEFPNRLGMEKIQYLAVEGDF 124 Query: 131 SLTSV 135 + ++ Sbjct: 125 KVKAI 129 >5NM1-A nrPDB Length = 139 Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 11 PVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGN-HVVMNRREF 69 P + G V++KG + N +++F + + IAF F F + +V N Sbjct: 10 PEGMCPGWSVVVKGK---TSSNTSMFEINFLSHPGDQ--IAFHFNPRFASSRIVCNSFLA 64 Query: 70 GIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPP-SFVKMVQVSR 128 W EE PFE + F++ IY + + I ++ +I + HR S + +Q+ Sbjct: 65 NHWGKEEVNKTFPFEAKEPFQVEIYSDQDYFHIFIDENKILQYKHRQKQLSSITKLQILN 124 Query: 129 DISLTSVCVC 138 DI ++SV + Sbjct: 125 DIEISSVEIT 134 >1SLC-A nrPDB Length = 134 Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 5/95 (5%) Query: 46 EDSDIAFRFRVHFGNH-----VVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEY 100 +D+++ F F H +V N ++ G W E+ PF+ G E+CI + + Sbjct: 37 DDNNLCLHFNPRFNAHGDVNTIVCNSKDAGAWGAEQRESAFPFQPGSVVEVCISFNQTDL 96 Query: 101 EIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSV 135 IK+ + F +R+ + + D + V Sbjct: 97 TIKLPDGYEFKFPNRLNLEAINYLSAGGDFKIKCV 131 >5JP5-A nrPDB Length = 145 Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 15/140 (10%) Query: 3 SLPVPY--KLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFG- 59 +L VP+ +P L ++I G ++D + F ++ DIAF F Sbjct: 12 NLAVPFFTSIPNGLYPSKSIVISGV----VLSDAK---RFQINLRCGGDIAFHLNPRFDE 64 Query: 60 NHVVMNRREFGIWMLEETT--DYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIP 117 N VV N + W EE + +PF G++F + I + +++ V+G I + HR+ Sbjct: 65 NAVVRNTQINNSWGPEERSLPGSMPFSRGQRFSVWILCEGHCFKVAVDGQHICEYSHRLM 124 Query: 118 --PSFVKMVQVSRDISLTSV 135 P + ++V+ DI LT V Sbjct: 125 NLPD-INTLEVAGDIQLTHV 143 >3VV1-A nrPDB Length = 160 Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 9/122 (7%) Query: 26 PIHSFINDPQLQV---------DFYTDMDEDSDIAFRFRVHFGNHVVMNRREFGIWMLEE 76 P+ F N +L++ F+ ++ DI F F V+N G E Sbjct: 38 PVQGFSNGARLRLVLLPTSADSRFHINLRTPDDIVLHFNARFDEGAVVNNSTSGGGWQSE 97 Query: 77 TTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSVC 136 PF+ K + L + I VNG FV R P V ++++ + + S Sbjct: 98 DRHANPFQQNKIYTLEFVSNGGIISIFVNGAHFADFVERTPSHGVHLIEIEGGVHVHSAH 157 Query: 137 VC 138 V Sbjct: 158 VS 159 >3M2M-A nrPDB Length = 134 Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 53 RFRVHF-GNHVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYG 111 RF H N +V N ++ G W E+ PF+ G E+CI + IK+ + Sbjct: 48 RFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFK 107 Query: 112 FVHRIPPSFVKMVQVSRDISLTSV 135 F +R+ + + D + V Sbjct: 108 FPNRLNMEAINYMAADGDFKIKCV 131 >4Y1X-A nrPDB Length = 154 Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 53 RFRVHF-GNHVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYG 111 RF H N +V N ++ G W E+ PF+ G E+CI +K+ + Sbjct: 68 RFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFK 127 Query: 112 FVHRIPPSFVKMVQVSRDISLTSV 135 F +R+ + + D + V Sbjct: 128 FPNRLNLEAINYMAADGDFKIKCV 151 >1W6P-A nrPDB Length = 134 Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 53 RFRVHF-GNHVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYG 111 RF H N +V N ++ G W E+ PF+ G E+CI +K+ + Sbjct: 48 RFNAHGDANTIVCNSKDDGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFK 107 Query: 112 FVHRIPPSFVKMVQVSRDISLTSV 135 F +R+ + + D + V Sbjct: 108 FPNRLNLEAINYMAADGDFKIKCV 131 >6E20-A nrPDB Length = 134 Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 13/95 (13%) Query: 12 VSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDED-SDIAFRFRVHFGNH-----VVMN 65 +S VG + I G P N F ++ DIA F H +V N Sbjct: 9 MSFKVGQTLTITGVPKPDSTN-------FAINIGHSPEDIALHMNPRFDAHGDQCTIVCN 61 Query: 66 RREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEY 100 + G W E D PF K+F++ I E+ Sbjct: 62 SFQSGSWCEEHRDDNFPFIQDKEFQIKITFTNEEF 96 >4GBT-A nrPDB Length = 735 Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Query: 5 PVPYK----LPVSLSVGSCVIIKGTPIHSFINDPQ-LQVDFYT 42 P PY+ +P LSV S +GT I I +PQ L F+T Sbjct: 354 PAPYRYYFFMPRQLSVTSSNSAEGTQITDTIGEPQALNSQFFT 396 >3UJZ-A nrPDB Length = 869 Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%) Query: 32 NDPQLQVDFYTDMDEDSDIAFRFRVHFGNHVVMNR 66 ND QLQVD ++ + FR H N+ VMN+ Sbjct: 698 NDCQLQVD-----TKEGQLRFRLANHRANNTVMNK 727 >3ODP-A nrPDB Length = 393 Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 10/79 (12%) Query: 12 VSLSVGSCVIIKGTPI------HSFINDPQLQVDFYTD----MDEDSDIAFRFRVHFGNH 61 + L+ G + TP+ S I+D L V F+++ + + D+ GNH Sbjct: 253 LELTAGKIATLYDTPLGFRHGPKSIIDDETLIVIFFSNDTYAREYEYDLLKEVYSQNGNH 312 Query: 62 VVMNRREFGIWMLEETTDY 80 V+ E+ ++E+ +DY Sbjct: 313 KVLAISEYEDKLIEDNSDY 331 >4B2G-A nrPDB Length = 609 Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 79 DYVPFEDGKQFELCIYVHYNEYEIKVNGI-RIYGFVHRIPPSF 120 D E GK++EL I + Y +V I R+ GF H P F Sbjct: 389 DLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGF-HNSAPQF 430 >5JMD-A nrPDB Length = 655 Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 67 REFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEI--KVNGIR-IYGFVHRIPPSFV-- 121 R+ GI +L + + DG QFEL + H I K GI + GF + P ++ Sbjct: 262 RKSGIDILNREVNVQVYNDGGQFELDPHYHLAAINIFCKALGIADVNGFRNEFPQEYLDT 321 Query: 122 --KMVQVSRDISL 132 KM+ +IS Sbjct: 322 IEKMIMFYANISF 334 >3SAQ-A nrPDB Length = 576 Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Query: 30 FINDPQLQ-VDFYTDMDEDSDIAFRFRVHFGNHVV 63 FINDP ++ +DF +DI R V FGN V+ Sbjct: 447 FINDPFIKGIDF----KNKTDIISRLEVRFGNDVL 477 >5XWM-A nrPDB Length = 383 Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Query: 43 DMDEDSDIAFRFRVH-------FGNHVVMNRREFGIWMLEETTDYV 81 D D+ SDIA R+R+ F N ++M R G ++ DY+ Sbjct: 68 DCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYI 113 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6A66-A nrPDB 197 2e-51 6A1S-A nrPDB 181 1e-46 3ZXF-A nrPDB 164 1e-41 4Y26-A nrPDB 159 3e-40 5NM1-A nrPDB 140 2e-34 5JP5-A nrPDB 135 7e-33 1SLC-A nrPDB 129 4e-31 1QMJ-A nrPDB 127 1e-30 3VV1-A nrPDB 124 1e-29 Sequences not found previously or not previously below threshold: 3M2M-A nrPDB 123 3e-29 1W6P-A nrPDB 119 5e-28 4Y1X-A nrPDB 118 9e-28 6E20-A nrPDB 91 2e-19 5DG2-A nrPDB 89 5e-19 3DUI-A nrPDB 88 1e-18 2YMZ-A nrPDB 85 1e-17 1GAN-A nrPDB 83 3e-17 1UL9-A nrPDB 37 0.002 1JMU-B nrPDB 30 0.28 2P0L-A nrPDB 28 1.6 5L94-A nrPDB 28 1.9 2RBC-A nrPDB 27 2.8 3QWY-A nrPDB 27 3.6 >6A66-A nrPDB Length = 142 Score = 197 bits (500), Expect = 2e-51, Method: Composition-based stats. Identities = 138/139 (99%), Positives = 138/139 (99%) Query: 1 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGN 60 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAF FRVHFGN Sbjct: 4 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFHFRVHFGN 63 Query: 61 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF 120 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF Sbjct: 64 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF 123 Query: 121 VKMVQVSRDISLTSVCVCN 139 VKMVQVSRDISLTSVCVCN Sbjct: 124 VKMVQVSRDISLTSVCVCN 142 >6A1S-A nrPDB Length = 145 Score = 181 bits (458), Expect = 1e-46, Method: Composition-based stats. Identities = 76/138 (55%), Positives = 93/138 (67%) Query: 1 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGN 60 MS LPVPY SLS GS V IKG P+ F+N P LQVDF+T+M E+SDI F F+V FG Sbjct: 4 MSLLPVPYTEAASLSTGSTVTIKGRPLACFLNAPYLQVDFHTEMKEESDIVFHFQVCFGR 63 Query: 61 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF 120 VVMN RE+G W + + +PF+DG++FEL I V ++Y++ VNG Y F HRI P Sbjct: 64 RVVMNSREYGAWKQQVESKNMPFQDGQEFELSISVLPDKYQVMVNGQSSYTFDHRIKPEA 123 Query: 121 VKMVQVSRDISLTSVCVC 138 VKMVQV RDISLT V Sbjct: 124 VKMVQVWRDISLTKFNVS 141 >3ZXF-A nrPDB Length = 138 Score = 164 bits (416), Expect = 1e-41, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 1 MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFG- 59 MS++P LP + G+ + I+G N + V+ ++ SD A F Sbjct: 3 MSNVPHKSSLPEGIRPGTVLRIRGLVPP---NASRFHVNLLCGEEQGSDAALHFNPRLDT 59 Query: 60 NHVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPS 119 + VV N +E G W EE VPF+ G+ FE+ I + ++ V + + F HR+P + Sbjct: 60 SEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLA 119 Query: 120 FVKMVQVSRDISLTSVCV 137 V++V+V D+ L SV + Sbjct: 120 RVRLVEVGGDVQLDSVRI 137 >4Y26-A nrPDB Length = 154 Score = 159 bits (403), Expect = 3e-40, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 4/135 (2%) Query: 4 LPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFG-NHV 62 +P LP + G+ + I+G N + V+ ++ SD A F + V Sbjct: 22 VPHKSSLPEGIRPGTVLRIRGLVPP---NASRFHVNLLCGEEQGSDAALHFNPRLDTSEV 78 Query: 63 VMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVK 122 V N +E G W EE VPF+ G+ FE+ I + ++ V + + F HR+P + V+ Sbjct: 79 VFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVR 138 Query: 123 MVQVSRDISLTSVCV 137 +V+V D+ L SV + Sbjct: 139 LVEVGGDVQLDSVRI 153 >5NM1-A nrPDB Length = 139 Score = 140 bits (353), Expect = 2e-34, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 11 PVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGN-HVVMNRREF 69 P + G V++KG + N +++F + + IAF F F + +V N Sbjct: 10 PEGMCPGWSVVVKGK---TSSNTSMFEINFLSHPGDQ--IAFHFNPRFASSRIVCNSFLA 64 Query: 70 GIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIP-PSFVKMVQVSR 128 W EE PFE + F++ IY + + I ++ +I + HR S + +Q+ Sbjct: 65 NHWGKEEVNKTFPFEAKEPFQVEIYSDQDYFHIFIDENKILQYKHRQKQLSSITKLQILN 124 Query: 129 DISLTSVCVC 138 DI ++SV + Sbjct: 125 DIEISSVEIT 134 >5JP5-A nrPDB Length = 145 Score = 135 bits (339), Expect = 7e-33, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Query: 3 SLPVPY--KLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFG- 59 +L VP+ +P L ++I G ++D + F ++ DIAF F Sbjct: 12 NLAVPFFTSIPNGLYPSKSIVISGV----VLSDAK---RFQINLRCGGDIAFHLNPRFDE 64 Query: 60 NHVVMNRREFGIWMLEETT--DYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIP 117 N VV N + W EE + +PF G++F + I + +++ V+G I + HR+ Sbjct: 65 NAVVRNTQINNSWGPEERSLPGSMPFSRGQRFSVWILCEGHCFKVAVDGQHICEYSHRLM 124 Query: 118 -PSFVKMVQVSRDISLTSVC 136 + ++V+ DI LT V Sbjct: 125 NLPDINTLEVAGDIQLTHVE 144 >1SLC-A nrPDB Length = 134 Score = 129 bits (324), Expect = 4e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 13/128 (10%) Query: 14 LSVGSCVIIKGTPIHSFINDPQLQVDFYTDMD-EDSDIAFRFRVHFGNH-----VVMNRR 67 L G C+ ++G D + F ++ +D+++ F F H +V N + Sbjct: 11 LKPGECLRVRG----EVAADAK---SFLLNLGKDDNNLCLHFNPRFNAHGDVNTIVCNSK 63 Query: 68 EFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVS 127 + G W E+ PF+ G E+CI + + IK+ + F +R+ + + Sbjct: 64 DAGAWGAEQRESAFPFQPGSVVEVCISFNQTDLTIKLPDGYEFKFPNRLNLEAINYLSAG 123 Query: 128 RDISLTSV 135 D + V Sbjct: 124 GDFKIKCV 131 >1QMJ-A nrPDB Length = 132 Score = 127 bits (320), Expect = 1e-30, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 14/131 (10%) Query: 14 LSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIA-FRFRVHFG-----NHVVMNRR 67 + G CV +KG ++D + F ++ +DS F F N VV N + Sbjct: 10 VQPGECVKVKGK----ILSDAK---GFSVNVGKDSSTLMLHFNPRFDCHGDVNTVVCNSK 62 Query: 68 EFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVS 127 E G W E+ PF+ G + E+CI E ++KV + + F +R+ ++ + V Sbjct: 63 EDGTWGEEDRKADFPFQQGDKVEICISFDAAEVKVKVPEVE-FEFPNRLGMEKIQYLAVE 121 Query: 128 RDISLTSVCVC 138 D + ++ Sbjct: 122 GDFKVKAIKFS 132 >3VV1-A nrPDB Length = 160 Score = 124 bits (312), Expect = 1e-29, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 9/124 (7%) Query: 25 TPIHSFINDPQLQV---------DFYTDMDEDSDIAFRFRVHFGNHVVMNRREFGIWMLE 75 P+ F N +L++ F+ ++ DI F F V+N G Sbjct: 37 IPVQGFSNGARLRLVLLPTSADSRFHINLRTPDDIVLHFNARFDEGAVVNNSTSGGGWQS 96 Query: 76 ETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSV 135 E PF+ K + L + I VNG FV R P V ++++ + + S Sbjct: 97 EDRHANPFQQNKIYTLEFVSNGGIISIFVNGAHFADFVERTPSHGVHLIEIEGGVHVHSA 156 Query: 136 CVCN 139 V + Sbjct: 157 HVSH 160 >3M2M-A nrPDB Length = 134 Score = 123 bits (308), Expect = 3e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 13/128 (10%) Query: 14 LSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSD-IAFRFRVHFGNH-----VVMNRR 67 L G C+ ++G + F ++ +DS+ + F F H +V N + Sbjct: 11 LKPGECLKVRGELAPDAKS-------FVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSK 63 Query: 68 EFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVS 127 + G W E+ PF+ G E+CI + IK+ + F +R+ + + Sbjct: 64 DDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAAD 123 Query: 128 RDISLTSV 135 D + V Sbjct: 124 GDFKIKCV 131 >1W6P-A nrPDB Length = 134 Score = 119 bits (298), Expect = 5e-28, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 13/128 (10%) Query: 14 LSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSD-IAFRFRVHFGNH-----VVMNRR 67 L G C+ ++G D + F ++ +DS+ + F F H +V N + Sbjct: 11 LKPGECLRVRG----EVAPDAK---SFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSK 63 Query: 68 EFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVS 127 + G W E+ PF+ G E+CI +K+ + F +R+ + + Sbjct: 64 DDGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAAD 123 Query: 128 RDISLTSV 135 D + V Sbjct: 124 GDFKIKCV 131 >4Y1X-A nrPDB Length = 154 Score = 118 bits (295), Expect = 9e-28, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 13/128 (10%) Query: 14 LSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSD-IAFRFRVHFGNH-----VVMNRR 67 L G C+ ++G D + F ++ +DS+ + F F H +V N + Sbjct: 31 LKPGECLRVRG----EVAPDAK---SFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSK 83 Query: 68 EFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVS 127 + G W E+ PF+ G E+CI +K+ + F +R+ + + Sbjct: 84 DGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAAD 143 Query: 128 RDISLTSV 135 D + V Sbjct: 144 GDFKIKCV 151 >6E20-A nrPDB Length = 134 Score = 90.9 bits (224), Expect = 2e-19, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 13/131 (9%) Query: 13 SLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMD-EDSDIAFRFRVHFGNH-----VVMNR 66 S VG + I G P N F ++ DIA F H +V N Sbjct: 10 SFKVGQTLTITGVPKPDSTN-------FAINIGHSPEDIALHMNPRFDAHGDQCTIVCNS 62 Query: 67 REFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQV 126 + G W E D PF K+F++ I E+ + + F +R K + Sbjct: 63 FQSGSWCEEHRDDNFPFIQDKEFQIKITFTNEEFLVTLPDGSEIHFPNRQGSEKYKYMYF 122 Query: 127 SRDISLTSVCV 137 ++ + V + Sbjct: 123 EGEVRIQGVEI 133 >5DG2-A nrPDB Length = 135 Score = 89.3 bits (220), Expect = 5e-19, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 9/126 (7%) Query: 14 LSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSD-IAFRFRVHF-GNHVVMNRREFGI 71 + GS + I G+ F ++ + +D + F F + +V N + Sbjct: 15 MKPGSTLKITGSIADGTD-------GFVINLGQGTDKLNLHFNPRFSESTIVCNSLDGSN 67 Query: 72 WMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDIS 131 W E+ D++ F G + + + +++++K+ F +R+ S + + V + Sbjct: 68 WGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLSYLSVRGGFN 127 Query: 132 LTSVCV 137 ++S + Sbjct: 128 MSSFKL 133 >3DUI-A nrPDB Length = 135 Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 14/129 (10%) Query: 13 SLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSD-IAFRFRVHFGNH-----VVMNR 66 L G + +KG + + F ++ +DS + F F H +V N Sbjct: 12 GLKPGQRLTVKGIIAPNAKS-------FVMNLGKDSTHLGLHFNPRFDAHGDVNLIVCNS 64 Query: 67 REFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQV 126 ++ W E+ PF+ G E+ ++ ++ + + G + F +R+ S Sbjct: 65 KKMEEWGTEQRETVFPFQKGAPIEITFSINPSDLTVHLPG-HQFSFPNRLGLSVFDYFDT 123 Query: 127 SRDISLTSV 135 D +L SV Sbjct: 124 HGDFTLRSV 132 >2YMZ-A nrPDB Length = 130 Score = 84.7 bits (208), Expect = 1e-17, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 9/123 (7%) Query: 17 GSCVIIKGTPIHSFINDPQLQVDFYTDMDE-DSDIAFRFRVHFGNHV-VMNRREFGIWML 74 G + IKG D + F ++ SD+A F F V V N W Sbjct: 14 GGTMKIKG----HISEDAE---SFAINLGCKSSDLALHFNPRFNESVIVCNSLCSDNWQQ 66 Query: 75 EETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTS 134 E+ + F G ++ + +++ +K+ F +R + + + +TS Sbjct: 67 EQRDKHFNFYKGSTVKIIVEFLGDKFLVKLPDGHEVEFPNRHGYDKISYLNILGGFKVTS 126 Query: 135 VCV 137 V Sbjct: 127 FKV 129 >1GAN-A nrPDB Length = 134 Score = 83.2 bits (204), Expect = 3e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 15/122 (12%) Query: 14 LSVGSCVIIKG-TPIHSFINDPQLQVDFYTDMDED-SDIAFRFRVHFG-----NHVVMNR 66 L G CV IKG P F ++ ED S+ F F N +V N Sbjct: 12 LKPGHCVEIKGSIPPDC--------KGFAVNLGEDASNFLLHFNARFDLHGDVNKIVCNS 63 Query: 67 REFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQV 126 +E W E+ PF+ G + +C ++ IK + + F R + + + Sbjct: 64 KEADAWGSEQREGVFPFQQGAEVMVCFEYQTDKIIIKFSSGDQFSFPVRKVLPSIPFLSL 123 Query: 127 SR 128 Sbjct: 124 EG 125 >1UL9-A nrPDB Length = 150 Score = 37.3 bits (85), Expect = 0.002, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 9/115 (7%) Query: 9 KLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVH-FGNHVVMNRR 67 KL S I+ + +S +F + +I + N +V N R Sbjct: 12 KLQNDFKPESVAAIRSSAFNSKGGTTVF--NFLS---AGENILLHISIRPGENVIVFNSR 66 Query: 68 E-FGIWMLEETTDYV-PFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSF 120 G W EE Y F + + H + ++I+ + + RI + Sbjct: 67 LKNGAWGPEERIPYAEKFRPPNP-SITVIDHGDRFQIRFDYGTSIYYNKRIKENA 120 >1JMU-B nrPDB Length = 666 Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 16/87 (18%) Query: 40 FYTDMDEDSDIAFRFRVHFGNHVVM---------------NRREFGIWMLEETTDYV-PF 83 F + +++ + F + G VV + W F Sbjct: 303 FQIQVTDNTGTNWHFNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVF 362 Query: 84 EDGKQFELCIYVHYNEYEIKVNGIRIY 110 + FEL VN +++Y Sbjct: 363 QSKIPFELWTAASQIGQATVVNYVQLY 389 >2P0L-A nrPDB Length = 288 Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 3/60 (5%) Query: 83 FEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVK---MVQVSRDISLTSVCVCN 139 ++ + FE+ ++++ +NG + G R + + + V D S + + Sbjct: 136 YQPIEHFEVETSYCPGKFDLSINGKKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISD 195 >5L94-A nrPDB Length = 410 Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 18/46 (39%) Query: 73 MLEETTDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPP 118 EE + P + ++ ++ HY+ + + I+ R P Sbjct: 28 WYEEMRNTAPVQWDEERQVWDVFHYDGVKEVLEQKNIFSSDRRPPQ 73 >2RBC-A nrPDB Length = 343 Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 12/97 (12%) Query: 7 PYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGNH-VVMN 65 P + L+ + I+ P + + T ++ D+ + + + Sbjct: 193 PVETLEGLAPAATHIVFSEPAATRL----------TGLETVKDMLPVLHARYPQTFIAVT 242 Query: 66 RREFGIWMLEETTDYVPFEDGKQFE-LCIYVHYNEYE 101 G W E V F+ Q E + + + Sbjct: 243 AGPAGCWWTEADDPTVHFQTTMQVEAVDTLAAGDIFH 279 >3QWY-A nrPDB Length = 308 Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Query: 61 HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYEI 102 VV+ +F E +PFE G++ E+ + + +E Sbjct: 148 EVVVGTFKFTG----ERETDLPFEQGERLEILSKTNQDWWEA 185 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.314 0.134 0.358 Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,940,540 Number of Sequences: 36641 Number of extensions: 172348 Number of successful extensions: 578 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 515 Number of HSP's gapped (non-prelim): 46 length of query: 139 length of database: 10,336,785 effective HSP length: 87 effective length of query: 52 effective length of database: 7,149,018 effective search space: 371748936 effective search space used: 371748936 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 54 (25.4 bits)