BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9UBD6 (479 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3HD6-A nrPDB 983 0.0 3B9W-A nrPDB 181 4e-46 5AEX-A nrPDB 52 6e-07 3C1J-A nrPDB 46 3e-05 6EJH-A nrPDB 46 3e-05 2B2H-A nrPDB 44 2e-04 6EU6-A nrPDB 43 3e-04 1ZOV-A nrPDB 30 2.5 >3HD6-A nrPDB Length = 490 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/478 (100%), Positives = 478/478 (100%) Query: 2 AWNTNLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYP 61 AWNTNLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYP Sbjct: 7 AWNTNLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYP 66 Query: 62 SFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVG 121 SFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVG Sbjct: 67 SFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVG 126 Query: 122 VENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGS 181 VENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGS Sbjct: 127 VENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGS 186 Query: 182 MTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISY 241 MTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISY Sbjct: 187 MTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISY 246 Query: 242 HGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMML 301 HGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMML Sbjct: 247 HGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMML 306 Query: 302 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAAS 361 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAAS Sbjct: 307 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAAS 366 Query: 362 ASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFW 421 ASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFW Sbjct: 367 ASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFW 426 Query: 422 GQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSVPSVPMVSPLPMASSVPLVP 479 GQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSVPSVPMVSPLPMASSVPLVP Sbjct: 427 GQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSVPSVPMVSPLPMASSVPLVP 484 >3B9W-A nrPDB Length = 407 Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 128/387 (33%), Positives = 202/387 (52%), Gaps = 45/387 (11%) Query: 53 ENEFYYRYPSFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQ--GWF 110 E +Y ++ M+ VGFGFLM F++RYGFSA +L+ A G+ +L++ G F Sbjct: 10 EARLVAQYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIF 69 Query: 111 -HFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFIL 169 H L V+ +I A+F VA+ +A GAVLG++ Q ++ F V ++ +NE+++ Sbjct: 70 GHALTPH----SVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLALFIVPVYLLNEWLV 125 Query: 170 LNLLK-----VKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIG 224 L+ +D+ GS+ IH FGAYFGL V+ L Q + S SD F+M+G Sbjct: 126 LDNASGLTEGFQDSAGSIAIHAFGAYFGLGVSIAL--TTAAQRAQPIESDATSDRFSMLG 183 Query: 225 TLFLWMYWPSFNSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQN 284 ++ LW++WPSF +AI + + +NT +L L + +S+ HK GK +V + N Sbjct: 184 SMVLWLFWPSFATAIVPF-EQMPQTIVNTLLALCGATLATYFLSALFHK-GKASIVDMAN 241 Query: 285 ATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLH 344 A LAGGVA+G+ ++ P GA +IG + G IS +GFV++ P LES+ DTCG++NL Sbjct: 242 AALAGGVAIGSVCNIV-GPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNL- 299 Query: 345 GIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAM 404 GF+ Q+ G+ +TLA+ Sbjct: 300 ---------------------------HGLPGLLGGFSAILIVPGIAVAQLTGIGITLAL 332 Query: 405 ALMGGIIVGLILRLPFWGQPSDENCFE 431 AL+GG+I G +++L + + E+ E Sbjct: 333 ALIGGVIAGALIKLTGTTKQAYEDSHE 359 >5AEX-A nrPDB Length = 505 Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 116/299 (38%), Gaps = 33/299 (11%) Query: 177 DAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMI-GTLFLWMYWPSF 235 D G + +H + GL IL +RN +++ + +++ GT+FLW W F Sbjct: 186 DYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWFGWMFF 245 Query: 236 NSAISYHGDSQHRAAINTYCSL------AACVLTSVAISSALHKKGKLDMVHIQNATLAG 289 N G S A I + S+ AAC + + K V + + +AG Sbjct: 246 N------GGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAG 299 Query: 290 GVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGI 349 V + AA + + + A++IG V G L L+S L I D ++HG+ G Sbjct: 300 LVGITPAAGFVPI-WSAVVIGVVTGAGCNLAVD-----LKSLLRIDDGLDCYSIHGVGGC 353 Query: 350 IGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTAR--TQGKFQIYGLLVTLAMALM 407 IG ++ + AA G +G W Q +Q+ G+ LA + Sbjct: 354 IGSVLTGIFAADYVNATAGSY-------ISPIDGGWINHHYKQVGYQLAGICAALAWTVT 406 Query: 408 GGIIVGLILR-LPFWG---QPSDENCFEDAVY-WEMPEGNSTVYIPEDPTFKPSGPSVP 461 I+ L + +PF +E DA E ST YIPE K S P Sbjct: 407 VTSILLLTMNAIPFLKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRSKTSAQMPP 465 >3C1J-A nrPDB Length = 424 Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 29/262 (11%) Query: 126 INADFCVASVCVAFGAVLG------KVSPIQLLIMTFFQVTLFAVNEFI----LLNLLKV 175 I+ F ++ C+ G ++G + S + + ++ + ++ + + LL Sbjct: 99 IHVAFQGSAACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGA 158 Query: 176 KDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMI--GTLFLWMYWP 233 D G +H A GL ++ +R + KE ++ M+ GT L++ W Sbjct: 159 LDFAGGTVVHINAAIAGLVGAYLIGKR-VGFGKEA----FKPHNLPMVFTGTAILYIGW- 212 Query: 234 SFNSAISYHGDSQHRAA---INTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGG 290 F + G + AA +NT + AA +L + AL +GK ++ + +AG Sbjct: 213 -FGANAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL--RGKPSLLGACSGAIAGL 269 Query: 291 VAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGII 350 V V T A + GALIIG V G+ G L+ L + D C + +HG+ GI+ Sbjct: 270 VGV-TPACGYIGVGGALIIGVVAGLAGLWG----VTMLKRLLRVDDPCDVFGVHGVCGIV 324 Query: 351 GGIVGAVTAASASLEVYGKEGL 372 G I+ + AAS+ V EG+ Sbjct: 325 GCIMTGIFAASSLGGVGFAEGV 346 >6EJH-A nrPDB Length = 486 Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 123/310 (39%), Gaps = 26/310 (8%) Query: 173 LKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMI-GTLFLWMY 231 L D G +H + L + L +R+ +K + + +++ GT+FLW Sbjct: 176 LGALDFAGGGPVHENSGFAALAYSLWLGKRHDPVAKGKVPKYKPHSVSSIVMGTIFLWFG 235 Query: 232 WPSFNSAISYHGDSQHR---AAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLA 288 W FN + G+S R A +NT + A LT + + GK V + +A Sbjct: 236 WYGFNGGST--GNSSMRSWYACVNTNLAAATGGLTWMLV-DWFRTGGKWSTVGLCMGAIA 292 Query: 289 GGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPG 348 G V + AA + + Y ++I G V II L+ L I D + LH + G Sbjct: 293 GLVGITPAAGYVPV-YTSVIFGIVPAIICNFAVD-----LKDLLQIDDGMDVWALHCVGG 346 Query: 349 IIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMAL-M 407 +G + + AA + G E D N W Q +Q+ G A + + Sbjct: 347 FVGNFMTGLFAADYVAMIDGTE-----IDGGWMNHHW---KQLGYQLAGSCAVAAWSFTV 398 Query: 408 GGIIVGLILRLPFWGQPSDENCFEDAVYWEMPE-GNSTVYIPEDPTFKPSG-PSVPSVPM 465 II+ + R+PF E+ E+ + ++ + G Y +DP P + S + Sbjct: 399 TSIILLAMDRIPFLRIRLHED--EEMLGTDLAQIGEYAYYADDDPETNPYVLEPIRSTTI 456 Query: 466 VSPLPMASSV 475 PLP V Sbjct: 457 SQPLPHIDGV 466 >2B2H-A nrPDB Length = 399 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 20/207 (9%) Query: 170 LNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRR-NLEQSKERQNSVYQSDLFAMIGTLFL 228 L L D G M +H + L V + +R E+ +S+ + +IG L Sbjct: 142 LAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLT----LIGAALL 197 Query: 229 WMYWPSFN--SAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNAT 286 W W FN SA++ + D A + T S A + I K G L +V + Sbjct: 198 WFGWFGFNGGSALAAN-DVAINAVVVTNTSAAVAGFVWMVIGWIKGKPGSLGIV---SGA 253 Query: 287 LAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGI 346 +AG A+ AA + + GA++IG V GI+ YL + I ++ +HGI Sbjct: 254 IAGLAAITPAAGFVDVK-GAIVIGLVAGIVC-----YLAMDFRIKKKIDESLDAWAIHGI 307 Query: 347 PGIIGGIVGAVTAASASLEVYGKEGLV 373 G+ G + + A+ EV G GL+ Sbjct: 308 GGLWGSVAVGIL---ANPEVNGYAGLL 331 >6EU6-A nrPDB Length = 405 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 22/214 (10%) Query: 160 TLFAVNEFILLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRR----NLEQSKERQNSVY 215 LF+ ++ L L D G+ +H+ G +F + ++ R N + S R Sbjct: 146 NLFSPDQTGWLKELGFIDFAGATVVHSIGGWFAMAAAIMVGPRIDKYNPDGSSNRIG--L 203 Query: 216 QSDLFAMIGTLFLWMYWPSFNSAISYHGDSQHRAAINT-----YCSLAACVLTSVAISSA 270 + A +GT FLW W FN G S R ++N ++AA A+ Sbjct: 204 HNVPLATLGTFFLWFGWFGFN------GGSLLRVSVNIGLVILNTNMAAASAGVSALIFI 257 Query: 271 LHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLES 330 + +++ + A LAG VA+ TA+ M+ P A+ IG + GI++ + F+E Sbjct: 258 YATRKRIEAGSLFTAILAGLVAI-TASSNMVTPVSAVAIGLITGILAIIA----EGFIEK 312 Query: 331 RLHIQDTCGINNLHGIPGIIGGIVGAVTAASASL 364 L I D +HG+ G+IG + A+ A + L Sbjct: 313 TLKIDDPVSAIAVHGVGGVIGTLCVAIFAQKSYL 346 >1ZOV-A nrPDB Length = 386 Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Query: 2 AWNTNLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKN--LSDMENEFYYR 59 AWN+ L +L + L V+ F FE D +S H + ++EN YY Sbjct: 203 AWNSKLLSKLDVEIPLQPYRQVVGF-------FECDEAKYSNNAHYPAFMVEVENGIYYG 255 Query: 60 YPSF 63 +PSF Sbjct: 256 FPSF 259 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3HD6-A nrPDB 660 0.0 3B9W-A nrPDB 325 3e-89 6EJH-A nrPDB 310 9e-85 5AEX-A nrPDB 286 1e-77 3C1J-A nrPDB 203 2e-52 2B2H-A nrPDB 180 1e-45 6EU6-A nrPDB 151 8e-37 Sequences not found previously or not previously below threshold: 6NU3-b nrPDB 29 4.3 1OQY-A nrPDB 28 9.8 CONVERGED! >3HD6-A nrPDB Length = 490 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 478/478 (100%), Positives = 478/478 (100%) Query: 2 AWNTNLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYP 61 AWNTNLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYP Sbjct: 7 AWNTNLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYP 66 Query: 62 SFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVG 121 SFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVG Sbjct: 67 SFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVG 126 Query: 122 VENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGS 181 VENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGS Sbjct: 127 VENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGS 186 Query: 182 MTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISY 241 MTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISY Sbjct: 187 MTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISY 246 Query: 242 HGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMML 301 HGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMML Sbjct: 247 HGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMML 306 Query: 302 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAAS 361 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAAS Sbjct: 307 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAAS 366 Query: 362 ASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFW 421 ASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFW Sbjct: 367 ASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFW 426 Query: 422 GQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSVPSVPMVSPLPMASSVPLVP 479 GQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSVPSVPMVSPLPMASSVPLVP Sbjct: 427 GQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSVPSVPMVSPLPMASSVPLVP 484 >3B9W-A nrPDB Length = 407 Score = 325 bits (833), Expect = 3e-89, Method: Composition-based stats. Identities = 127/387 (32%), Positives = 201/387 (51%), Gaps = 45/387 (11%) Query: 53 ENEFYYRYPSFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQ--GWF 110 E +Y ++ M+ VGFGFLM F++RYGFSA +L+ A G+ +L++ G F Sbjct: 10 EARLVAQYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIF 69 Query: 111 -HFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFIL 169 H L V+ +I A+F VA+ +A GAVLG++ Q ++ F V ++ +NE+++ Sbjct: 70 GHALTPH----SVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLALFIVPVYLLNEWLV 125 Query: 170 LNLL-----KVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIG 224 L+ +D+ GS+ IH FGAYFGL V+ L Q + S SD F+M+G Sbjct: 126 LDNASGLTEGFQDSAGSIAIHAFGAYFGLGVSIAL--TTAAQRAQPIESDATSDRFSMLG 183 Query: 225 TLFLWMYWPSFNSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQN 284 ++ LW++WPSF +AI + + +NT +L L + +S+ HK GK +V + N Sbjct: 184 SMVLWLFWPSFATAIVPF-EQMPQTIVNTLLALCGATLATYFLSALFHK-GKASIVDMAN 241 Query: 285 ATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLH 344 A LAGGVA+G+ ++ P GA +IG + G IS +GFV++ P LES+ DTCG++N Sbjct: 242 AALAGGVAIGSVCNIV-GPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHN-- 298 Query: 345 GIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAM 404 GF+ Q+ G+ +TLA+ Sbjct: 299 --------------------------LHGLPGLLGGFSAILIVPGIAVAQLTGIGITLAL 332 Query: 405 ALMGGIIVGLILRLPFWGQPSDENCFE 431 AL+GG+I G +++L + + E+ E Sbjct: 333 ALIGGVIAGALIKLTGTTKQAYEDSHE 359 >6EJH-A nrPDB Length = 486 Score = 310 bits (794), Expect = 9e-85, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 144/376 (38%), Gaps = 37/376 (9%) Query: 118 IVVGVENLINADFCVASVCVAFGAVLG------KVSPIQLLIMTFFQVTLFAVNEF---- 167 IV V +++ + V + G ++ P+ + + + V + + Sbjct: 110 IVKTVPDILFCLYQGMFAAVTAILMAGAGCERARLGPMMVFLFIWLTVVYCPIAYWTWGG 169 Query: 168 -ILLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMI-GT 225 L L D G +H + L + L +R+ +K + + +++ GT Sbjct: 170 NGWLVSLGALDFAGGGPVHENSGFAALAYSLWLGKRHDPVAKGKVPKYKPHSVSSIVMGT 229 Query: 226 LFLWMYWPSFNSAISYHGDSQHR---AAINTYCSLAACVLTSVAISSALHKKGKLDMVHI 282 +FLW W FN + G+S R A +NT + A LT + + GK V + Sbjct: 230 IFLWFGWYGFNGGST--GNSSMRSWYACVNTNLAAATGGLTWMLV-DWFRTGGKWSTVGL 286 Query: 283 QNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINN 342 +AG V + AA + + Y ++I G V II L+ L I D + Sbjct: 287 CMGAIAGLVGITPAAGYVPV-YTSVIFGIVPAIICNFAVD-----LKDLLQIDDGMDVWA 340 Query: 343 LHGIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTL 402 LH + G +G + + AA + G E D N W Q +Q+ G Sbjct: 341 LHCVGGFVGNFMTGLFAADYVAMIDGTE-----IDGGWMNHHW---KQLGYQLAGSCAVA 392 Query: 403 AMAL-MGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPE-GNSTVYIPEDPTFKPSG-PS 459 A + + II+ + R+PF E+ E+ + ++ + G Y +DP P Sbjct: 393 AWSFTVTSIILLAMDRIPFLRIRLHED--EEMLGTDLAQIGEYAYYADDDPETNPYVLEP 450 Query: 460 VPSVPMVSPLPMASSV 475 + S + PLP V Sbjct: 451 IRSTTISQPLPHIDGV 466 >5AEX-A nrPDB Length = 505 Score = 286 bits (732), Expect = 1e-77, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 143/377 (37%), Gaps = 40/377 (10%) Query: 108 GWFHFLQDRYIVVGVENLINADFCVASVCVAFGAVLG------KVSPIQLLIMTFFQVTL 161 G+ + L V + +++ A + V +LG ++ P+ + + + + Sbjct: 106 GFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVY 165 Query: 162 FAVNEF-----ILLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQ 216 + + L L D G + +H + GL IL +RN +++ Sbjct: 166 CPIACWVWNAEGWLVKLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKP 225 Query: 217 SDLFAMI-GTLFLWMYWPSFNSAISYHGDSQHRAAINTYCS------LAACVLTSVAISS 269 + +++ GT+FLW W FN G S A I + S AAC + + Sbjct: 226 HSVTSVVLGTVFLWFGWMFFN------GGSAGNATIRAWYSIMSTNLAAACGGLTWMVID 279 Query: 270 ALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLE 329 K V + + +AG V + AA + + + A++IG V G L L+ Sbjct: 280 YFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPI-WSAVVIGVVTGAGCNLAVD-----LK 333 Query: 330 SRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTART 389 S L I D ++HG+ G IG ++ + AA G + D N + Sbjct: 334 SLLRIDDGLDCYSIHGVGGCIGSVLTGIFAADYVNATAGSY--ISPIDGGWINHHY---K 388 Query: 390 QGKFQIYGLLVTLAMALMGGIIVGLILR-LPFWG---QPSDENCFEDAVY-WEMPEGNST 444 Q +Q+ G+ LA + I+ L + +PF +E DA E ST Sbjct: 389 QVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELGTDAAQIGEFTYEEST 448 Query: 445 VYIPEDPTFKPSGPSVP 461 YIPE K S P Sbjct: 449 AYIPEPIRSKTSAQMPP 465 >3C1J-A nrPDB Length = 424 Score = 203 bits (515), Expect = 2e-52, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 145/379 (38%), Gaps = 44/379 (11%) Query: 64 QDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVE 123 + V V F + YG+S I W +L ++ ++ + Sbjct: 42 LSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINWLMLKN-----IELTAVMGSIY 96 Query: 124 NLINADFCVASVCVAFGAVLG------KVSPIQLLIMTFFQVTLFAVNEFIL----LNLL 173 I+ F ++ C+ G ++G + S + + ++ + ++ + + L Sbjct: 97 QYIHVAFQGSAACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASH 156 Query: 174 KVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMI--GTLFLWMY 231 D G +H A GL ++ +R + KE ++ M+ GT L++ Sbjct: 157 GALDFAGGTVVHINAAIAGLVGAYLIGKR-VGFGKEA----FKPHNLPMVFTGTAILYIG 211 Query: 232 WPSFNSA-ISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGG 290 W N+ + A +NT + AA +L + AL +GK ++ + +AG Sbjct: 212 WFGANAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL--RGKPSLLGACSGAIAGL 269 Query: 291 VAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGII 350 V V A + GALIIG V G+ G L+ L + D C + +HG+ GI+ Sbjct: 270 VGVTPACGYI-GVGGALIIGVVAGLAGLWGV----TMLKRLLRVDDPCDVFGVHGVCGIV 324 Query: 351 GGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGI 410 G I+ + AAS+ V EG+ T Q Q+ + +T+ + + Sbjct: 325 GCIMTGIFAASSLGGVGFAEGV-------------TMGHQLLVQLESIAITIVWSGVVAF 371 Query: 411 IVGLILRLP-FWGQPSDEN 428 I + L P ++ Sbjct: 372 IGYKLADLTVGLRVPEEQE 390 >2B2H-A nrPDB Length = 399 Score = 180 bits (456), Expect = 1e-45, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 140/398 (35%), Gaps = 43/398 (10%) Query: 59 RYPSFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYI 118 R + ++ + F+ + YG+S N + G L+ G + + Sbjct: 32 RRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLSGV----KGEDL 87 Query: 119 VVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEF----ILLNLLK 174 + + ++ A +A + A A KVS LL + + L L Sbjct: 88 LFMMYQMMFAAVTIAILTSAI-AERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLG 146 Query: 175 VKDAGGSMTIHTFGAYFGLTVTRILYRR-NLEQSKERQNSVYQSDLFAMIGTLFLWMYWP 233 D G M +H + L V + +R E+ +S+ +IG LW W Sbjct: 147 ALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSI----PLTLIGAALLWFGWF 202 Query: 234 SFNSAIS-YHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVA 292 FN + D A + T S A + I K G L +V + +AG A Sbjct: 203 GFNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIKGKPGSLGIV---SGAIAGLAA 259 Query: 293 VGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGG 352 + AA + + GA++IG V GI+ YL + I ++ +HGI G+ G Sbjct: 260 ITPAAGFVDVK-GAIVIGLVAGIVC-----YLAMDFRIKKKIDESLDAWAIHGIGGLWGS 313 Query: 353 IVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIV 412 + + A + EV G GL+ Q+ + T A A + +I+ Sbjct: 314 VAVGILA---NPEVNGYAGLLFG-----------NPQLLVSQLIAVASTTAYAFLVTLIL 359 Query: 413 G-LILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIPE 449 + S E + V ++ + Y E Sbjct: 360 AKAVDAAVGLRVSSQE----EYVGLDLSQHEEVAYTLE 393 >6EU6-A nrPDB Length = 405 Score = 151 bits (380), Expect = 8e-37, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 108/272 (39%), Gaps = 40/272 (14%) Query: 156 FFQVTLFAVNEFILLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRR----NLEQSKERQ 211 + LF+ ++ L L D G+ +H+ G +F + ++ R N + S R Sbjct: 142 WAWGNLFSPDQTGWLKELGFIDFAGATVVHSIGGWFAMAAAIMVGPRIDKYNPDGSSNRI 201 Query: 212 NSVYQSDLFAMIGTLFLWMYWPSFNSAISYHGDSQHRAAINT-----YCSLAACVLTSVA 266 + A +GT + ++G S R ++N ++AA A Sbjct: 202 G--LHNVPLATLGTF------FLWFGWFGFNGGSLLRVSVNIGLVILNTNMAAASAGVSA 253 Query: 267 ISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTP 326 + + +++ + A LAG VA+ TA+ M+ P A+ IG + GI++ + Sbjct: 254 LIFIYATRKRIEAGSLFTAILAGLVAI-TASSNMVTPVSAVAIGLITGILAIIA----EG 308 Query: 327 FLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAA-SASLEVYGKEGLVHSFDFQGFNGDW 385 F+E L I D +HG+ G+IG + A+ A S L G Sbjct: 309 FIEKTLKIDDPVSAIAVHGVGGVIGTLCVAIFAQKSYLLAENGSRMH------------- 355 Query: 386 TARTQGKFQIYGLLVTLAMALMGGIIVGLILR 417 Q Q G++V + + G++ L L+ Sbjct: 356 ----QLGIQALGVIVAFSWSFGLGMLFFLCLK 383 >6NU3-b nrPDB Length = 215 Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Query: 448 PEDPTFKPSGPSVPSVPMVSPLPMASSV---PLVP 479 P+ P P+ + S +P PM S+V P+VP Sbjct: 174 PDPPDL-PTVDPISSSLTSAPAPMLSAVSCLPIVP 207 >1OQY-A nrPDB Length = 368 Score = 27.8 bits (60), Expect = 9.8, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 5/64 (7%) Query: 414 LILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIPED-----PTFKPSGPSVPSVPMVSP 468 L +P DE F + + G T PE P S P P+ M P Sbjct: 60 LSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHP 119 Query: 469 LPMA 472 P A Sbjct: 120 PPAA 123 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.320 0.131 0.346 Lambda K H 0.267 0.0399 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,093,535 Number of Sequences: 36641 Number of extensions: 642959 Number of successful extensions: 2387 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 37 Number of HSP's that attempted gapping in prelim test: 2305 Number of HSP's gapped (non-prelim): 62 length of query: 479 length of database: 10,336,785 effective HSP length: 101 effective length of query: 378 effective length of database: 6,636,044 effective search space: 2508424632 effective search space used: 2508424632 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 61 (28.1 bits)