BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9SR62 (309 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5VJW-A nrPDB 638 0.0 1S70-A nrPDB 39 0.002 4JA9-A nrPDB 37 0.008 4ZVZ-A nrPDB 37 0.009 3V4Y-A nrPDB 37 0.012 4IL1-A nrPDB 35 0.045 4ORB-A nrPDB 35 0.057 5JPE-A nrPDB 34 0.065 5W0W-C nrPDB 34 0.074 1G5B-A nrPDB 33 0.11 1V73-A nrPDB 33 0.15 4ORC-A nrPDB 33 0.19 5KBP-A nrPDB 32 0.48 2QJC-A nrPDB 31 0.79 5Y6Q-B nrPDB 30 0.96 5YKC-A nrPDB 30 1.3 3UGP-A nrPDB 30 1.4 1L9U-H nrPDB 30 1.7 1L9Z-H nrPDB 29 3.3 4BCL-A nrPDB 27 7.5 >5VJW-A nrPDB Length = 309 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/309 (100%), Positives = 309/309 (100%) Query: 1 MAQKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVID 60 MAQKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVID Sbjct: 1 MAQKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVID 60 Query: 61 FLISLPEKHPDQTHVFLAGNHDFAFSGFLGLLPRPSDGSDLKDTWKEYSKSEETEGWYTG 120 FLISLPEKHPDQTHVFLAGNHDFAFSGFLGLLPRPSDGSDLKDTWKEYSKSEETEGWYTG Sbjct: 61 FLISLPEKHPDQTHVFLAGNHDFAFSGFLGLLPRPSDGSDLKDTWKEYSKSEETEGWYTG 120 Query: 121 EGFEDMHLQGRRWAGKIKATFNSVKGMAYKGSIYDAGSTFESYGVPHGSSDLMKAVPESH 180 EGFEDMHLQGRRWAGKIKATFNSVKGMAYKGSIYDAGSTFESYGVPHGSSDLMKAVPESH Sbjct: 121 EGFEDMHLQGRRWAGKIKATFNSVKGMAYKGSIYDAGSTFESYGVPHGSSDLMKAVPESH 180 Query: 181 KKFLTNMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQ 240 KKFLTNMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQ Sbjct: 181 KKFLTNMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQ 240 Query: 241 HLSGRKNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKI 300 HLSGRKNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKI Sbjct: 241 HLSGRKNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKI 300 Query: 301 IRDTDNLSS 309 IRDTDNLSS Sbjct: 301 IRDTDNLSS 309 >1S70-A nrPDB Length = 330 Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 9 ICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPEK 68 IC GDIHG + L L L P A +FLGDY DRG ++ + I L++ K Sbjct: 63 IC-GDIHGQYTDL--LRLFEYGGFPPE----ANYLFLGDYVDRGKQSLETICLLLAYKIK 115 Query: 69 HPDQTHVFLAGNHDFA 84 +P + L GNH+ A Sbjct: 116 YP-ENFFLLRGNHECA 130 >4JA9-A nrPDB Length = 488 Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Query: 1 MAQKPRTVICVGDIHGYISKLNNLW-LN-LQSAIDPSDFSSALVIFLGDYCDRGPETRKV 58 + + + +C GD HG L N++ LN L S +P IF GD+ DRG + +V Sbjct: 220 LKETEKITVC-GDTHGQFYDLLNIFELNGLPSETNP-------YIFNGDFVDRGSFSVEV 271 Query: 59 IDFLISLPEKHPDQTHVFLAGNHD 82 I L +PD H+ L GNH+ Sbjct: 272 ILTLFGFKLLYPDHFHL-LRGNHE 294 >4ZVZ-A nrPDB Length = 333 Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Query: 1 MAQKPRTVICVGDIHGYISKLNNLW-LN-LQSAIDPSDFSSALVIFLGDYCDRGPETRKV 58 + + + +C GD HG L N++ LN L S +P IF GD+ DRG + +V Sbjct: 65 LKETEKITVC-GDTHGQFYDLLNIFELNGLPSETNP-------YIFNGDFVDRGSFSVEV 116 Query: 59 IDFLISLPEKHPDQTHVFLAGNHD 82 I L +PD H+ L GNH+ Sbjct: 117 ILTLFGFKLLYPDHFHL-LRGNHE 139 >3V4Y-A nrPDB Length = 306 Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 9 ICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPEK 68 IC GDIHG L L L P + +FLGDY DRG ++ + I L++ K Sbjct: 60 IC-GDIHGQYYDL--LRLFEYGGFPPE----SNYLFLGDYVDRGKQSLETICLLLAYKIK 112 Query: 69 HPDQTHVFLAGNHDFA 84 +P + L GNH+ A Sbjct: 113 YP-ENFFLLRGNHECA 127 >4IL1-A nrPDB Length = 823 Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 V GDIHG L L+ + P++ +FLGDY DRG + + + +L +L Sbjct: 418 VTVCGDIHGQFFDLMKLF---EVGGSPAN---TRYLFLGDYVDRGYFSIECVLYLWALKI 471 Query: 68 KHPDQTHVFLAGNHD 82 +P +T L GNH+ Sbjct: 472 LYP-KTLFLLRGNHE 485 >4ORB-A nrPDB Length = 519 Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 V GDIHG L L+ + P++ +FLGDY DRG + + + +L +L Sbjct: 85 VTVCGDIHGQFFDLMKLF---EVGGSPAN---TRYLFLGDYVDRGYFSIECVLYLWALKI 138 Query: 68 KHPDQTHVFLAGNHD 82 +P +T L GNH+ Sbjct: 139 LYP-KTLFLLRGNHE 152 >5JPE-A nrPDB Length = 311 Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 9/105 (8%) Query: 11 VGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPEKHP 70 VGD+HG L ++ + P +FLGDY +RG ++ + I L+ K+P Sbjct: 60 VGDVHGQYHDLIRIFS--KCGFPPK----TNYLFLGDYVNRGKQSLETILLLLCYKIKYP 113 Query: 71 DQTHVFLAGNHDFA-FSGFLGLLPRPSDGSDLKDTWKEYSKSEET 114 + L GNH+ A + G ++K TWK + + T Sbjct: 114 -ENFFLLRGNHECANVTRVYGFYDECKRRCNIK-TWKLFIDTFNT 156 >5W0W-C nrPDB Length = 311 Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 V GD+HG L L+ + D + +F+GDY DRG + + + L++L Sbjct: 54 VTVCGDVHGQFHDLMELFRIGGKSPDTN------YLFMGDYVDRGYYSVETVTLLVALKV 107 Query: 68 KHPDQTHVFLAGNHD 82 ++ ++ + L GNH+ Sbjct: 108 RYRERITI-LRGNHE 121 >1G5B-A nrPDB Length = 221 Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 10/65 (15%) Query: 4 KPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSA--LVIFLGDYCDRGPETRKVIDF 61 K R + VGD+HG + NL + +D F + L+I +GD DRG E + ++ Sbjct: 11 KYRNIWVVGDLHG-------CYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLE- 62 Query: 62 LISLP 66 LI+ P Sbjct: 63 LITFP 67 >1V73-A nrPDB Length = 342 Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 6 RTVICVGDIHGYISKLNNLWLNLQSAIDPSD---FSSALVIFLGDYCDRGPETRKVIDFL 62 + V+ + D+HG L L L Q ID F ++ GD DRG + +V+ F+ Sbjct: 71 KKVVALSDVHGQYDVLLTL-LKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFM 129 Query: 63 ISLPEKHPDQTHV--FLAGNHD 82 L ++ D + L GNH+ Sbjct: 130 YQLDQQARDAGGMVHLLMGNHE 151 >4ORC-A nrPDB Length = 544 Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 9/81 (11%) Query: 2 AQKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDF 61 + P TV GDIHG L L+ + P++ +FLGDY DRG + + + + Sbjct: 110 VEAPITV--CGDIHGQFFDLMKLF---EVGGSPAN---TRYLFLGDYVDRGYFSIECVLY 161 Query: 62 LISLPEKHPDQTHVFLAGNHD 82 L L +P T L GNH+ Sbjct: 162 LWVLKILYPS-TLFLLRGNHE 181 >5KBP-A nrPDB Length = 899 Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 44/219 (20%) Query: 29 QSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPEKHPDQTHVFLAGNHDFAFSGF 88 Q D ++S + + + D P R + + E P+ + F+ N D Sbjct: 213 QKLADVERYASTNHLLMMNGVDHQPVQRDITKAIALANELFPE--YEFIHSNFDDYLKAV 270 Query: 89 LGLLPRPSDGSDLKDTWKEYSKSEETEGWYTGEGFEDMHLQGRRWAGKIKATFNSVKGMA 148 LP DL E + S+ET+GWYT + ++W K++ ++ Sbjct: 271 QEELPE-----DLGTVTGELT-SQETDGWYTLANTSSARVYLKQWNTKVQRQLENIAEPL 324 Query: 149 YKGSIYDAGSTFESYG-VPHGSSDLMKAVPESHKKFLTNMVWVHEEDDVCIETEEGLKHC 207 A +E G PH D + K L N H D +C C Sbjct: 325 -------AAMAYEVTGDYPHDQFDY------AWKTLLQN----HPHDSIC--------GC 359 Query: 208 KLIAVHAGL----EKGNNV------EEQLKLLRAKDTSI 236 + VH G+ E N+V E +L A DTS+ Sbjct: 360 SVDEVHRGMMTRFENANDVGHFLADEATRQLTEAIDTSV 398 >2QJC-A nrPDB Length = 262 Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 12/75 (16%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 VI VGDIHG ++L +L A+ S LV +GD ++GP++ V+ L L Sbjct: 21 VIIVGDIHGCRAQLEDLL----RAVSFKQGSDTLVA-VGDLVNKGPDSFGVVRLLKRLGA 75 Query: 68 KHPDQTHVFLAGNHD 82 + GNHD Sbjct: 76 YS-------VLGNHD 83 >5Y6Q-B nrPDB Length = 330 Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 31 AIDPSDFSSALVIFLGDYCDRGP--ETRKV-IDFLISLPEKHPDQTH 74 A+ P D + ALV F + P ETR++ ID LP + PDQ H Sbjct: 160 AVYPGDLAVALVAFDAVVIVQNPQGETRRIAIDDFFLLPGETPDQEH 206 >5YKC-A nrPDB Length = 586 Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 21/148 (14%) Query: 110 KSEETEGWYTGEGFEDMHLQGRRWAGKIKATFNSVKGMAYKGS---------IYDAGSTF 160 K+ GW G D L W+ ++ S G+ Y G+ + + + F Sbjct: 94 KNCSVAGWLLGNPMCDEFLNAPEWSYIVEKDRPS-NGLCYPGTFNYYEELKHLMSSTNQF 152 Query: 161 E--------SYGVPHGSSDLMKAVPESHKK-FLTNMVWVHEEDDVCIETEEGLKHCKL-- 209 E S+ SS + A P + + F N+VW+ ++++V + + Sbjct: 153 EKIQIFPRSSWSNHDASSGVSSACPYNGRSSFFRNVVWLIKKNNVYRTITRTYNNTNIED 212 Query: 210 IAVHAGLEKGNNVEEQLKLLRAKDTSIS 237 + + G+ NN EQ+KL + T +S Sbjct: 213 LLIIWGIHHPNNAAEQIKLYQNPSTYVS 240 >3UGP-A nrPDB Length = 245 Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 21/129 (16%) Query: 166 PHGSSDLMKAVPESHKKFLTNMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQ 225 PH +SD ++ H+ ++ + EE D+ + EEG++ K ++ GL++ E Sbjct: 2 PHMTSDPVRQY--LHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQ----ELI 55 Query: 226 LKLLRAKDTSISKIQHLSGRKNVWD-------------IPQELDDKHTVVVSGHHGKLHI 272 +++RAK ++IQ + G K D +P+EL + G + H+ Sbjct: 56 REVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHL 115 Query: 273 --DGMRLII 279 +RL++ Sbjct: 116 IEANLRLVV 124 >1L9U-H nrPDB Length = 332 Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/95 (22%), Positives = 50/95 (52%), Gaps = 8/95 (8%) Query: 187 MVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGRK 246 ++ + EE D+ + EEG++ K ++ GL++ E +++RAK ++++ + G+ Sbjct: 17 LLTLEEEIDLARKVEEGMEAIKKLSEATGLDQ----ELIREVVRAKILGTARVEEVDGK- 71 Query: 247 NVWDIPQELDDKHTVVVSGHHGKLHI--DGMRLII 279 + +P+EL + G + H+ +RL++ Sbjct: 72 -LKSLPKELKRYLHIAREGEAARQHLIEANLRLVV 105 >1L9Z-H nrPDB Length = 438 Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 19/108 (17%) Query: 187 MVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGRK 246 ++ + EE D+ + EEG++ K ++ GL++ E ++RAK ++IQ + G K Sbjct: 108 LLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIRE----VVRAKILGTARIQKIPGLK 163 Query: 247 NVWD-------------IPQELDDKHTVVVSGHHGKLHI--DGMRLII 279 D +P+EL + G + H+ +RL++ Sbjct: 164 EKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVV 211 >4BCL-A nrPDB Length = 366 Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 10/52 (19%) Query: 91 LLPRPSDGSDLKDTWKEYSKSEETEG----------WYTGEGFEDMHLQGRR 132 L+ P D +DL DTW+ + +S G W+ G F ++ G+R Sbjct: 148 LMKVPLDNNDLVDTWEGFQQSISGGGANFGDWIREFWFIGPAFAAINEGGQR 199 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5VJW-A nrPDB 677 0.0 Sequences not found previously or not previously below threshold: 1S70-A nrPDB 40 0.001 4ZVZ-A nrPDB 38 0.004 4JA9-A nrPDB 38 0.004 3V4Y-A nrPDB 38 0.007 5W0W-C nrPDB 35 0.052 5JPE-A nrPDB 35 0.052 4ORB-A nrPDB 35 0.056 4IL1-A nrPDB 35 0.056 1V73-A nrPDB 34 0.086 1G5B-A nrPDB 33 0.13 5KBP-A nrPDB 33 0.20 4ORC-A nrPDB 33 0.21 3UGP-A nrPDB 31 0.65 2QJC-A nrPDB 31 0.70 5Y6Q-B nrPDB 31 0.74 1L9U-H nrPDB 30 1.1 5YKC-A nrPDB 30 1.7 1L9Z-H nrPDB 29 2.9 4BCL-A nrPDB 29 3.2 1QO8-A nrPDB 28 5.6 2QLU-A nrPDB 28 6.0 >5VJW-A nrPDB Length = 309 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 309/309 (100%), Positives = 309/309 (100%) Query: 1 MAQKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVID 60 MAQKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVID Sbjct: 1 MAQKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVID 60 Query: 61 FLISLPEKHPDQTHVFLAGNHDFAFSGFLGLLPRPSDGSDLKDTWKEYSKSEETEGWYTG 120 FLISLPEKHPDQTHVFLAGNHDFAFSGFLGLLPRPSDGSDLKDTWKEYSKSEETEGWYTG Sbjct: 61 FLISLPEKHPDQTHVFLAGNHDFAFSGFLGLLPRPSDGSDLKDTWKEYSKSEETEGWYTG 120 Query: 121 EGFEDMHLQGRRWAGKIKATFNSVKGMAYKGSIYDAGSTFESYGVPHGSSDLMKAVPESH 180 EGFEDMHLQGRRWAGKIKATFNSVKGMAYKGSIYDAGSTFESYGVPHGSSDLMKAVPESH Sbjct: 121 EGFEDMHLQGRRWAGKIKATFNSVKGMAYKGSIYDAGSTFESYGVPHGSSDLMKAVPESH 180 Query: 181 KKFLTNMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQ 240 KKFLTNMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQ Sbjct: 181 KKFLTNMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQ 240 Query: 241 HLSGRKNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKI 300 HLSGRKNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKI Sbjct: 241 HLSGRKNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKI 300 Query: 301 IRDTDNLSS 309 IRDTDNLSS Sbjct: 301 IRDTDNLSS 309 >1S70-A nrPDB Length = 330 Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 9 ICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPEK 68 IC GDIHG + L L L P A +FLGDY DRG ++ + I L++ K Sbjct: 63 IC-GDIHGQYTDL--LRLFEYGGFPPE----ANYLFLGDYVDRGKQSLETICLLLAYKIK 115 Query: 69 HPDQTHVFLAGNHDFA 84 +P + L GNH+ A Sbjct: 116 YP-ENFFLLRGNHECA 130 >4ZVZ-A nrPDB Length = 333 Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Query: 1 MAQKPRTVICVGDIHGYISKLNNLW-LN-LQSAIDPSDFSSALVIFLGDYCDRGPETRKV 58 + + + +C GD HG L N++ LN L S +P IF GD+ DRG + +V Sbjct: 65 LKETEKITVC-GDTHGQFYDLLNIFELNGLPSETNP-------YIFNGDFVDRGSFSVEV 116 Query: 59 IDFLISLPEKHPDQTHVFLAGNHD 82 I L +PD H+ L GNH+ Sbjct: 117 ILTLFGFKLLYPDHFHL-LRGNHE 139 >4JA9-A nrPDB Length = 488 Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Query: 1 MAQKPRTVICVGDIHGYISKLNNLW-LN-LQSAIDPSDFSSALVIFLGDYCDRGPETRKV 58 + + + +C GD HG L N++ LN L S +P IF GD+ DRG + +V Sbjct: 220 LKETEKITVC-GDTHGQFYDLLNIFELNGLPSETNP-------YIFNGDFVDRGSFSVEV 271 Query: 59 IDFLISLPEKHPDQTHVFLAGNHD 82 I L +PD H+ L GNH+ Sbjct: 272 ILTLFGFKLLYPDHFHL-LRGNHE 294 >3V4Y-A nrPDB Length = 306 Score = 37.7 bits (86), Expect = 0.007, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 9 ICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPEK 68 IC GDIHG L L L P + +FLGDY DRG ++ + I L++ K Sbjct: 60 IC-GDIHGQYYDL--LRLFEYGGFPPE----SNYLFLGDYVDRGKQSLETICLLLAYKIK 112 Query: 69 HPDQTHVFLAGNHDFA 84 +P + L GNH+ A Sbjct: 113 YP-ENFFLLRGNHECA 127 >5W0W-C nrPDB Length = 311 Score = 34.6 bits (78), Expect = 0.052, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 V GD+HG L L+ + D + +F+GDY DRG + + + L++L Sbjct: 54 VTVCGDVHGQFHDLMELFRIGGKSPDTN------YLFMGDYVDRGYYSVETVTLLVALKV 107 Query: 68 KHPDQTHVFLAGNHD 82 ++ ++ + L GNH+ Sbjct: 108 RYRERITI-LRGNHE 121 >5JPE-A nrPDB Length = 311 Score = 34.6 bits (78), Expect = 0.052, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 V VGD+HG L ++ + P +FLGDY +RG ++ + I L+ Sbjct: 57 VKVVGDVHGQYHDLIRIFS--KCGFPPK----TNYLFLGDYVNRGKQSLETILLLLCYKI 110 Query: 68 KHPDQTHVFLAGNHDFA 84 K+P + L GNH+ A Sbjct: 111 KYP-ENFFLLRGNHECA 126 >4ORB-A nrPDB Length = 519 Score = 34.6 bits (78), Expect = 0.056, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 V GDIHG L L+ + P++ +FLGDY DRG + + + +L +L Sbjct: 85 VTVCGDIHGQFFDLMKLF---EVGGSPAN---TRYLFLGDYVDRGYFSIECVLYLWALKI 138 Query: 68 KHPDQTHVFLAGNHD 82 +P +T L GNH+ Sbjct: 139 LYP-KTLFLLRGNHE 152 >4IL1-A nrPDB Length = 823 Score = 34.6 bits (78), Expect = 0.056, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 V GDIHG L L+ + P++ +FLGDY DRG + + + +L +L Sbjct: 418 VTVCGDIHGQFFDLMKLF---EVGGSPAN---TRYLFLGDYVDRGYFSIECVLYLWALKI 471 Query: 68 KHPDQTHVFLAGNHD 82 +P +T L GNH+ Sbjct: 472 LYP-KTLFLLRGNHE 485 >1V73-A nrPDB Length = 342 Score = 33.9 bits (76), Expect = 0.086, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 8/83 (9%) Query: 6 RTVICVGDIHGYISKLNNLWLNLQSAIDPSD----FSSALVIFLGDYCDRGPETRKVIDF 61 + V+ + D+HG L L L Q ID SD F ++ GD DRG + +V+ F Sbjct: 71 KKVVALSDVHGQYDVLLTL-LKKQKIID-SDGNWAFGEGHMVMTGDIFDRGHQVNEVLWF 128 Query: 62 LISLPEKHPDQTHV--FLAGNHD 82 + L ++ D + L GNH+ Sbjct: 129 MYQLDQQARDAGGMVHLLMGNHE 151 >1G5B-A nrPDB Length = 221 Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 10/67 (14%) Query: 2 AQKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSA--LVIFLGDYCDRGPETRKVI 59 K R + VGD+HG + NL + +D F + L+I +GD DRG E + + Sbjct: 9 GSKYRNIWVVGDLHG-------CYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECL 61 Query: 60 DFLISLP 66 + LI+ P Sbjct: 62 E-LITFP 67 >5KBP-A nrPDB Length = 899 Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 44/219 (20%) Query: 29 QSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPEKHPDQTHVFLAGNHDFAFSGF 88 Q D ++S + + + D P R + + E P+ + F+ N D Sbjct: 213 QKLADVERYASTNHLLMMNGVDHQPVQRDITKAIALANELFPE--YEFIHSNFDDYLKAV 270 Query: 89 LGLLPRPSDGSDLKDTWKEYSKSEETEGWYTGEGFEDMHLQGRRWAGKIKATFNSVKGMA 148 LP DL E + S+ET+GWYT + ++W K++ ++ Sbjct: 271 QEELPE-----DLGTVTGELT-SQETDGWYTLANTSSARVYLKQWNTKVQRQLENIAEPL 324 Query: 149 YKGSIYDAGSTFESYG-VPHGSSDLMKAVPESHKKFLTNMVWVHEEDDVCIETEEGLKHC 207 A +E G PH D + K L N H D +C C Sbjct: 325 -------AAMAYEVTGDYPHDQFDY------AWKTLLQN----HPHDSIC--------GC 359 Query: 208 KLIAVHAGL----EKGNNV------EEQLKLLRAKDTSI 236 + VH G+ E N+V E +L A DTS+ Sbjct: 360 SVDEVHRGMMTRFENANDVGHFLADEATRQLTEAIDTSV 398 >4ORC-A nrPDB Length = 544 Score = 32.7 bits (73), Expect = 0.21, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%) Query: 3 QKPRTVICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFL 62 + P TV GDIHG L L+ + P++ +FLGDY DRG + + + +L Sbjct: 111 EAPITV--CGDIHGQFFDLMKLF---EVGGSPAN---TRYLFLGDYVDRGYFSIECVLYL 162 Query: 63 ISLPEKHPDQTHVFLAGNHD 82 L +P T L GNH+ Sbjct: 163 WVLKILYP-STLFLLRGNHE 181 >3UGP-A nrPDB Length = 245 Score = 31.2 bits (69), Expect = 0.65, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 21/129 (16%) Query: 166 PHGSSDLMKAVPESHKKFLTNMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQ 225 PH +SD ++ H+ ++ + EE D+ + EEG++ K ++ GL++ E Sbjct: 2 PHMTSDPVRQY--LHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQ----ELI 55 Query: 226 LKLLRAKDTSISKIQHLSGRKNVWD-------------IPQELDDKHTVVVSGHHGKLHI 272 +++RAK ++IQ + G K D +P+EL + G + H+ Sbjct: 56 REVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHL 115 Query: 273 --DGMRLII 279 +RL++ Sbjct: 116 IEANLRLVV 124 >2QJC-A nrPDB Length = 262 Score = 30.8 bits (68), Expect = 0.70, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 12/75 (16%) Query: 8 VICVGDIHGYISKLNNLWLNLQSAIDPSDFSSALVIFLGDYCDRGPETRKVIDFLISLPE 67 VI VGDIHG ++L +L A+ S LV +GD ++GP++ V+ L L Sbjct: 21 VIIVGDIHGCRAQLEDLL----RAVSFKQGSDTLVA-VGDLVNKGPDSFGVVRLLKRLGA 75 Query: 68 KHPDQTHVFLAGNHD 82 + GNHD Sbjct: 76 YS-------VLGNHD 83 >5Y6Q-B nrPDB Length = 330 Score = 30.8 bits (68), Expect = 0.74, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 31 AIDPSDFSSALVIFLGDYCDRGP--ETRKV-IDFLISLPEKHPDQTH 74 A+ P D + ALV F + P ETR++ ID LP + PDQ H Sbjct: 160 AVYPGDLAVALVAFDAVVIVQNPQGETRRIAIDDFFLLPGETPDQEH 206 >1L9U-H nrPDB Length = 332 Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 50/95 (52%), Gaps = 8/95 (8%) Query: 187 MVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGRK 246 ++ + EE D+ + EEG++ K ++ GL++ E +++RAK ++++ + G+ Sbjct: 17 LLTLEEEIDLARKVEEGMEAIKKLSEATGLDQ----ELIREVVRAKILGTARVEEVDGK- 71 Query: 247 NVWDIPQELDDKHTVVVSGHHGKLHI--DGMRLII 279 + +P+EL + G + H+ +RL++ Sbjct: 72 -LKSLPKELKRYLHIAREGEAARQHLIEANLRLVV 105 >5YKC-A nrPDB Length = 586 Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 21/148 (14%) Query: 110 KSEETEGWYTGEGFEDMHLQGRRWAGKIKATFNSVKGMAYKGS---------IYDAGSTF 160 K+ GW G D L W+ ++ S G+ Y G+ + + + F Sbjct: 94 KNCSVAGWLLGNPMCDEFLNAPEWSYIVEKDRPS-NGLCYPGTFNYYEELKHLMSSTNQF 152 Query: 161 E--------SYGVPHGSSDLMKAVP-ESHKKFLTNMVWVHEEDDV--CIETEEGLKHCKL 209 E S+ SS + A P F N+VW+ ++++V I + + Sbjct: 153 EKIQIFPRSSWSNHDASSGVSSACPYNGRSSFFRNVVWLIKKNNVYRTITRTYNNTNIED 212 Query: 210 IAVHAGLEKGNNVEEQLKLLRAKDTSIS 237 + + G+ NN EQ+KL + T +S Sbjct: 213 LLIIWGIHHPNNAAEQIKLYQNPSTYVS 240 >1L9Z-H nrPDB Length = 438 Score = 28.8 bits (63), Expect = 2.9, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 19/108 (17%) Query: 187 MVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGRK 246 ++ + EE D+ + EEG++ K ++ GL++ E +++RAK ++IQ + G K Sbjct: 108 LLTLEEEIDLARKVEEGMEAIKKLSEATGLDQ----ELIREVVRAKILGTARIQKIPGLK 163 Query: 247 NVWD-------------IPQELDDKHTVVVSGHHGKLHI--DGMRLII 279 D +P+EL + G + H+ +RL++ Sbjct: 164 EKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVV 211 >4BCL-A nrPDB Length = 366 Score = 28.8 bits (63), Expect = 3.2, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 10/52 (19%) Query: 91 LLPRPSDGSDLKDTWKEYSKSEETEG----------WYTGEGFEDMHLQGRR 132 L+ P D +DL DTW+ + +S G W+ G F ++ G+R Sbjct: 148 LMKVPLDNNDLVDTWEGFQQSISGGGANFGDWIREFWFIGPAFAAINEGGQR 199 >1QO8-A nrPDB Length = 566 Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 11/101 (10%) Query: 213 HAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGRKNVWDIPQELDDKHTVV---VSGHHGK 269 H G G + + L+ +K Q + R N + ++D H+VV V G H Sbjct: 243 HGGKSSGPEIIDTLR-------KAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTG 295 Query: 270 LHIDGMRLIIDEGGGFP-DKPVAAIVLPSKKIIRDTDNLSS 309 ++ G + ++ GG+ +K + A P+ K + ++N+++ Sbjct: 296 YYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITA 336 >2QLU-A nrPDB Length = 314 Score = 27.7 bits (60), Expect = 6.0, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 189 WVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGRKNV 248 W E + I + G+KH L+ A ++G+N+E +L L+ A S +L G Sbjct: 54 WQSERE---IFSTPGMKHENLLQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKGNIIT 110 Query: 249 WD 250 W+ Sbjct: 111 WN 112 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.317 0.136 0.417 Lambda K H 0.267 0.0417 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,648,573 Number of Sequences: 36641 Number of extensions: 670053 Number of successful extensions: 1716 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 42 Number of HSP's that attempted gapping in prelim test: 1702 Number of HSP's gapped (non-prelim): 52 length of query: 309 length of database: 10,336,785 effective HSP length: 97 effective length of query: 212 effective length of database: 6,782,608 effective search space: 1437912896 effective search space used: 1437912896 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.3 bits)