BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q9SIY3
         (210 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5A5Y-A nrPDB                                                          431   e-121
1H80-A nrPDB                                                           31   0.49 
4YDO-A nrPDB                                                           27   5.2  

>5A5Y-A nrPDB
          Length = 212

 Score =  431 bits (1107), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 60
           MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA
Sbjct: 3   MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 62

Query: 61  VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 120
           VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR
Sbjct: 63  VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 122

Query: 121 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 180
           VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT
Sbjct: 123 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 182

Query: 181 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210
           MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP
Sbjct: 183 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 212


>1H80-A nrPDB
          Length = 464

 Score = 30.8 bits (68), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 33  RNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEED- 91
           RN F D  +    L   +    F++N  V   + S   C  ++++        S  +E  
Sbjct: 233 RNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVH 292

Query: 92  -----EEEIEYWIGKECVESPAKLSDIGSRVLKRVKEE 124
                ++ +E  +G+ C ++P    + G+R   RV ++
Sbjct: 293 TRQSWKQAVESKLGRGCAQTPYARGNGGTRWAARVTQK 330


>4YDO-A nrPDB
          Length = 329

 Score = 27.3 bits (59), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 150 GVKLEVD--ETKYDFGNCYEIECETEEPERVKTMIEE 184
             +L+VD  ++KYD+ +   ++  TEEP+  + + +E
Sbjct: 18  SARLQVDMTDSKYDYSDITPVDINTEEPQICQILYDE 54


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5A5Y-A nrPDB                                                          447   e-126

Sequences not found previously or not previously below threshold:

2V2V-A nrPDB                                                           29   1.5  
1H80-A nrPDB                                                           29   1.7  
1QHB-A nrPDB                                                           28   2.4  
4YDO-A nrPDB                                                           28   3.7  
2MBG-A nrPDB                                                           27   4.8  
6IW1-A nrPDB                                                           27   7.7  
5UBM-B nrPDB                                                           27   8.1  
4LOT-A nrPDB                                                           27   8.1  
4LOS-A nrPDB                                                           27   8.1  
4J1Y-A nrPDB                                                           27   8.1  


CONVERGED!
>5A5Y-A nrPDB
          Length = 212

 Score =  447 bits (1150), Expect = e-126,   Method: Composition-based stats.
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 60
           MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA
Sbjct: 3   MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 62

Query: 61  VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 120
           VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR
Sbjct: 63  VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 122

Query: 121 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 180
           VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT
Sbjct: 123 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 182

Query: 181 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210
           MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP
Sbjct: 183 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 212


>2V2V-A nrPDB
          Length = 271

 Score = 28.9 bits (63), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 89  EEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGF 133
           E  EE+I+  I  E  E    L DI   +   + E Y F ++LGF
Sbjct: 190 EYAEEKIQRIISGEVEEIENVLGDIARELYPEINEVYRFVEYLGF 234


>1H80-A nrPDB
          Length = 464

 Score = 28.9 bits (63), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 33  RNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEED- 91
           RN F D  +    L   +    F++N  V   + S   C  ++++        S  +E  
Sbjct: 233 RNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVH 292

Query: 92  -----EEEIEYWIGKECVESPAKLSDIGSRVLKRVKEE 124
                ++ +E  +G+ C ++P    + G+R   RV ++
Sbjct: 293 TRQSWKQAVESKLGRGCAQTPYARGNGGTRWAARVTQK 330


>1QHB-A nrPDB
          Length = 596

 Score = 28.5 bits (62), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 37  FDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLAN 83
           FD+PKN   +R A+ RL  L+     A    PP  I   + + T+ N
Sbjct: 176 FDSPKNAAFIRSAIERLNGLEWFNTPAKLGDPPAEIRRRRGEVTVGN 222


>4YDO-A nrPDB
          Length = 329

 Score = 27.7 bits (60), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 152 KLEVD--ETKYDFGNCYEIECETEEPERVKTMIEE 184
           +L+VD  ++KYD+ +   ++  TEEP+  + + +E
Sbjct: 20  RLQVDMTDSKYDYSDITPVDINTEEPQICQILYDE 54


>2MBG-A nrPDB
          Length = 265

 Score = 27.3 bits (59), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 145 VYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTE 188
           +Y   G+K +VDE K  +        E  EP  V ++++++L +
Sbjct: 49  IYRVSGIKSKVDELKAAYDREESTNLEDYEPNTVASLLKQYLRD 92


>6IW1-A nrPDB
          Length = 395

 Score = 26.5 bits (57), Expect = 7.7,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 77  AKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDF--LGFV 134
           AK T A  +S  E D+ +I+Y I  +          +G+      K+E    D   L F 
Sbjct: 117 AKFTCAKSMSLFEVDQTKIQYVIRAQL--------HVGA------KQENWNTDIKTLKFD 162

Query: 135 CLGGFENVRNV-YEWRGVKLEVDETKYDFGNCYEIECETE 173
            L G + V  + Y    ++ +V +T  DFGN Y  E ETE
Sbjct: 163 ALSGSQEVEFIGYGKATLECQV-QTAVDFGNSYIAEMETE 201


>5UBM-B nrPDB
          Length = 152

 Score = 26.5 bits (57), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 107 PAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENV 142
           P    D  + V +  K +Y F D +   CL GFE V
Sbjct: 9   PCPKEDTPNSVWEPAKAKYVFRDVVQITCLDGFEVV 44


>4LOT-A nrPDB
          Length = 249

 Score = 26.5 bits (57), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 107 PAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENV 142
           P    D  + V +  K +Y F D +   CL GFE V
Sbjct: 119 PCPKEDTPNSVWEPAKAKYVFRDVVQITCLDGFEVV 154


>4LOS-A nrPDB
          Length = 187

 Score = 26.5 bits (57), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 107 PAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENV 142
           P    D  + V +  K +Y F D +   CL GFE V
Sbjct: 122 PCPKEDTPNSVWEPAKAKYVFRDVVQITCLDGFEVV 157


>4J1Y-A nrPDB
          Length = 397

 Score = 26.5 bits (57), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 107 PAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENV 142
           P    D  + V +  K +Y F D +   CL GFE V
Sbjct: 2   PCPKEDTPNSVWEPAKAKYVFRDVVQITCLDGFEVV 37


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.318    0.136    0.395 

Lambda     K      H
   0.267   0.0417    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,438,308
Number of Sequences: 36641
Number of extensions: 343884
Number of successful extensions: 938
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 38
length of query: 210
length of database: 10,336,785
effective HSP length: 93
effective length of query: 117
effective length of database: 6,929,172
effective search space: 810713124
effective search space used: 810713124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.5 bits)