BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9R1T5 (312 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2GU2-A nrPDB 645 0.0 2I3C-A nrPDB 584 e-167 3NH5-A nrPDB 282 1e-76 2QJ8-A nrPDB 43 2e-04 2G9D-A nrPDB 34 0.070 6MFM-A nrPDB 32 0.38 2O1X-A nrPDB 32 0.45 1H76-A nrPDB 31 0.54 4QYZ-K nrPDB 30 1.1 2BCO-A nrPDB 30 1.3 1YW6-A nrPDB 30 1.6 2NNH-A nrPDB 30 1.8 3MF1-A nrPDB 29 2.9 1TJU-A nrPDB 29 3.0 3TGO-C nrPDB 28 3.7 >2GU2-A nrPDB Length = 312 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/311 (99%), Positives = 309/311 (99%) Query: 2 TSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCT 61 TSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCT Sbjct: 2 TSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCT 61 Query: 62 RYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNM 121 RYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNM Sbjct: 62 RYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNM 121 Query: 122 GCTLILEDSRNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQ 181 GCTLIL DS NDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQ Sbjct: 122 GCTLILGDSGNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQ 181 Query: 182 PHGVLRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAV 241 PHGVLRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAV Sbjct: 182 PHGVLRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAV 241 Query: 242 IHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLT 301 IHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLT Sbjct: 242 IHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLT 301 Query: 302 LNAKSIRSTLH 312 LNAKSIRSTLH Sbjct: 302 LNAKSIRSTLH 312 >2I3C-A nrPDB Length = 315 Score = 584 bits (1506), Expect = e-167, Method: Compositional matrix adjust. Identities = 271/312 (86%), Positives = 298/312 (95%), Gaps = 1/312 (0%) Query: 2 TSC-VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKC 60 TSC +AEE I+K+AIFGGTHGNELTGVFLV HWL+NGAE+ R GLEVKPFITNPRAV+KC Sbjct: 4 TSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKKC 63 Query: 61 TRYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSN 120 TRYIDCDLNR+FDLENL K+MSEDLPYEVRRAQEINHLFGPK+S+D+YD++FDLHNTTSN Sbjct: 64 TRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTSN 123 Query: 121 MGCTLILEDSRNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGP 180 MGCTLILEDSRN+FLIQMFHYIKT +APLPC VYLIEHPSLKYATTRSIAKYPVGIEVGP Sbjct: 124 MGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVGP 183 Query: 181 QPHGVLRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAA 240 QP GVLRADILDQMR+M+KHALDFI FNEGKEFPPCAI+VYKI+EKVDYPR+E+G++AA Sbjct: 184 QPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIAA 243 Query: 241 VIHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKL 300 +IHPNLQDQDWKPLHPGDP+F++LDGK IPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKL Sbjct: 244 IIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKL 303 Query: 301 TLNAKSIRSTLH 312 TLNAKSIR LH Sbjct: 304 TLNAKSIRCCLH 315 >3NH5-A nrPDB Length = 327 Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 188/302 (62%), Gaps = 1/302 (0%) Query: 6 AEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYID 65 + EP+ ++A+ GGTHGNE+ GV+L +WL+N E+ R P + NP A C RY+D Sbjct: 16 SREPLLRVAVTGGTHGNEMCGVYLARYWLQNPGELQRPSFSAMPVLANPAATAACCRYLD 75 Query: 66 CDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMGCTL 125 DLNR L L + D PYEV+RA+E+N L GPK + A+D DLHNTT+N G L Sbjct: 76 RDLNRSCTLTFLGSTATPDDPYEVKRARELNQLLGPKGTGQAFDFTLDLHNTTANTGVCL 135 Query: 126 ILEDSRNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQPHGV 185 I E S F + + HY++ +PC ++L E + + SI+K + + +GPQP GV Sbjct: 136 ISE-SNISFNLHLCHYLQRQNPGMPCRLFLYEPAGTETFSVESISKNGICLAMGPQPQGV 194 Query: 186 LRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAVIHPN 245 LRAD+ +MR ++ LDFI+ FN+G + P +D+Y+ + VD+PR GD+A +HP Sbjct: 195 LRADLFSRMRALVASILDFIELFNQGMDLPAFEMDIYRNLGSVDFPRTADGDLAGTVHPQ 254 Query: 246 LQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAK 305 LQD D++PL PG+P+F G+ + GD VYPVF+NEAAYYEK AF K+ K+ + Sbjct: 255 LQDHDFEPLRPGEPIFKLFSGEDVLYEGDSIVYPVFINEAAYYEKHVAFLKSEKIRVTVP 314 Query: 306 SI 307 ++ Sbjct: 315 AL 316 >2QJ8-A nrPDB Length = 332 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 45/115 (39%), Gaps = 15/115 (13%) Query: 12 KIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCD---L 68 + I GG HGNEL G L +K E R G + NP AV+ TR D L Sbjct: 47 SLLITGGNHGNELQGPILARRLVKWLPEAQRCGRIIIVPEINPLAVQAWTRNTPIDGKNL 106 Query: 69 NRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMGC 123 NRVF + D R A I+ L P D V DLH+ C Sbjct: 107 NRVFPGRS-------DGSVSERIADAISRLLLP-----VVDTVLDLHSFGPTWDC 149 >2G9D-A nrPDB Length = 350 Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 11 KKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFI-TNPRAVEKCTRYIDCDLN 69 K + I G HG+E + L+ W+ + + E FI +P+A + R+I+ +LN Sbjct: 54 KNMVISCGIHGDETAPMELLDKWIDDIVSGFQPVAERCLFIMAHPQATVRHVRFIEQNLN 113 Query: 70 RVFD 73 R+FD Sbjct: 114 RLFD 117 >6MFM-A nrPDB Length = 313 Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 16/133 (12%) Query: 13 IAIFGG--THGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCDLNR 70 +A+ GG T G LT W++ G V R+G +V ++ + + Sbjct: 120 VALIGGDTTQGPHLTITVTAMGWIETGKAVLRSGAKVGDYVCVSGQIG----------DA 169 Query: 71 VFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNS--DDAYDVVFDLHNT--TSNMGCTLI 126 + L++L + + L Y R + L G +S D + + DL + S +G LI Sbjct: 170 AYGLQHLGHSLQQRLDYPTPRCKLGEELKGLASSMIDVSDGLAQDLGHILKASKVGARLI 229 Query: 127 LEDSRNDFLIQMF 139 LE D ++Q Sbjct: 230 LEKLPVDPVLQQI 242 >2O1X-A nrPDB Length = 629 Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 228 VDYPRNESGDVAAVIHPNLQDQDWKPLHPGDPVFVSLDGKVI 269 + YPR + V A P+L+ +W+ L GD V + GK + Sbjct: 476 IRYPRGNTAQVPAGTWPDLKWGEWERLKGGDDVVILAGGKAL 517 >1H76-A nrPDB Length = 696 Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 196 RMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAVIHPNLQDQDWKPLH 255 R L+ + NE K+ CAI + + + N G + V N +D K + Sbjct: 328 RNLREEISPDSSKNECKKVRWCAIGHEETQKCDAWSINSGGKIECVSAENTEDCIAK-IV 386 Query: 256 PGDPVFVSLDGKVIPLGGDCTVYPVFV 282 G+ +SLDG I + G C + PV Sbjct: 387 KGEADAMSLDGGYIYIAGKCGLVPVLA 413 >4QYZ-K nrPDB Length = 199 Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 38/170 (22%) Query: 77 LSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMGCTLILEDSRNDFLI 136 +++ S DL Y++ Q + HLF P D A D +F + + GC ++L+ Sbjct: 8 IARAWSRDL-YQLH--QGLWHLF-PNRPDAARDFLFHVEKRNTPEGCHVLLQS------- 56 Query: 137 QMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQPHGVLRADILDQMRR 196 A +P S + AT + ++VG + LRA+ Sbjct: 57 ----------AQMPVSTAV--------ATVIKTKQVEFQLQVGVPLYFRLRAN------- 91 Query: 197 MLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAV--IHP 244 +K LD +R + C + + K E++ + + + G+ A V +HP Sbjct: 92 PIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHP 141 >2BCO-A nrPDB Length = 350 Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 8 EPIKKIAIFGGTHGNELTGVFLVTHWLKN-GAEVHRAGLEVKPFITNPRAVEKCTRYIDC 66 + K I I G HG+E + LV +K+ + + I +P + TR+++ Sbjct: 51 QETKNIIISCGIHGDETAPMELVDSIIKDIESGFQKVDARCLFIIAHPESTLAHTRFLEE 110 Query: 67 DLNRVFD 73 +LNR+FD Sbjct: 111 NLNRLFD 117 >1YW6-A nrPDB Length = 335 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%) Query: 9 PIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH-----RAGLEVKPFITNPRAVEKCTRY 63 P + I G HGNE V ++ L GA H R L V + NP A+++ RY Sbjct: 47 PQGALVISAGIHGNETAPVEMLDALL--GAISHGEIPLRWRLLV--ILGNPPALKQGKRY 102 Query: 64 IDCDLNRVF 72 D+NR+F Sbjct: 103 CHSDMNRMF 111 >2NNH-A nrPDB Length = 476 Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 20/75 (26%) Query: 13 IAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCDLNRV- 71 I F GTH L V L +++ + H+A L+V NPR +IDC L ++ Sbjct: 205 IDCFPGTHNKVLKNVALTRSYIREKVKEHQASLDV----NNPRD------FIDCFLIKME 254 Query: 72 ---------FDLENL 77 F++ENL Sbjct: 255 QEKDNQKSEFNIENL 269 >3MF1-A nrPDB Length = 346 Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 172 YPVGIEVGPQPHGVLRADI-LDQMRRMLKHALDFIQRFN 209 YP+ GP P G LR D+ D RR LD +Q F Sbjct: 155 YPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFR 193 >1TJU-A nrPDB Length = 474 Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust. Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 28/187 (14%) Query: 45 LEVKPFITNPRAVEKCTRYIDCDLNRVFD-LENLSKEMSEDLPYEVRRAQEINHLFGPKN 103 ++++ + +A+EK +L ++ LE +S+E S+ + + V+++ E H + Sbjct: 39 VDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGV-FVVKQSDEDIHTANERR 97 Query: 104 SDDAY-DVVFDLHNTTSN-----MGCTLILEDSRNDFLIQMFHYIKTCM----------- 146 + D+ LH S L +++S + + IKT + Sbjct: 98 LKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVIL 157 Query: 147 ---------APLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQPHGVLRADILDQMRRM 197 P+ S +L+ H + + + I V P G L + LD R M Sbjct: 158 PGYSHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREM 217 Query: 198 LKHALDF 204 L+ L+F Sbjct: 218 LRSELEF 224 >3TGO-C nrPDB Length = 323 Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 208 FNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAVIHPNLQDQDWKPLHPGDPVFVSLDGK 267 FN + P A++ K+ KV G++A P L D DW+ L DP S D K Sbjct: 227 FNVVWQRLPAALE--KVGMKVTDSTRSQGNMAVTYKP-LSDSDWQELGASDPGLASGDYK 283 Query: 268 V 268 + Sbjct: 284 L 284 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2GU2-A nrPDB 567 e-162 2I3C-A nrPDB 555 e-158 3NH5-A nrPDB 479 e-136 2QJ8-A nrPDB 140 6e-34 Sequences not found previously or not previously below threshold: 3NA6-A nrPDB 58 5e-09 3CDX-A nrPDB 49 3e-06 3B2Y-A nrPDB 39 0.002 2QVP-A nrPDB 37 0.008 1YW6-A nrPDB 36 0.019 2G9D-A nrPDB 35 0.033 1YW4-A nrPDB 34 0.073 4OKO-A nrPDB 33 0.19 2BCO-A nrPDB 33 0.19 3IEH-A nrPDB 32 0.39 2O1X-A nrPDB 31 0.80 4TUF-A nrPDB 30 1.8 4E2O-A nrPDB 28 4.7 1O9R-A nrPDB 28 5.3 3MF1-A nrPDB 27 8.8 >2GU2-A nrPDB Length = 312 Score = 567 bits (1461), Expect = e-162, Method: Composition-based stats. Identities = 309/311 (99%), Positives = 309/311 (99%) Query: 2 TSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCT 61 TSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCT Sbjct: 2 TSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCT 61 Query: 62 RYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNM 121 RYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNM Sbjct: 62 RYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNM 121 Query: 122 GCTLILEDSRNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQ 181 GCTLIL DS NDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQ Sbjct: 122 GCTLILGDSGNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQ 181 Query: 182 PHGVLRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAV 241 PHGVLRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAV Sbjct: 182 PHGVLRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAV 241 Query: 242 IHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLT 301 IHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLT Sbjct: 242 IHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLT 301 Query: 302 LNAKSIRSTLH 312 LNAKSIRSTLH Sbjct: 302 LNAKSIRSTLH 312 >2I3C-A nrPDB Length = 315 Score = 555 bits (1429), Expect = e-158, Method: Composition-based stats. Identities = 271/312 (86%), Positives = 298/312 (95%), Gaps = 1/312 (0%) Query: 2 TSC-VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKC 60 TSC +AEE I+K+AIFGGTHGNELTGVFLV HWL+NGAE+ R GLEVKPFITNPRAV+KC Sbjct: 4 TSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKKC 63 Query: 61 TRYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSN 120 TRYIDCDLNR+FDLENL K+MSEDLPYEVRRAQEINHLFGPK+S+D+YD++FDLHNTTSN Sbjct: 64 TRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTSN 123 Query: 121 MGCTLILEDSRNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGP 180 MGCTLILEDSRN+FLIQMFHYIKT +APLPC VYLIEHPSLKYATTRSIAKYPVGIEVGP Sbjct: 124 MGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVGP 183 Query: 181 QPHGVLRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAA 240 QP GVLRADILDQMR+M+KHALDFI FNEGKEFPPCAI+VYKI+EKVDYPR+E+G++AA Sbjct: 184 QPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIAA 243 Query: 241 VIHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKL 300 +IHPNLQDQDWKPLHPGDP+F++LDGK IPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKL Sbjct: 244 IIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKL 303 Query: 301 TLNAKSIRSTLH 312 TLNAKSIR LH Sbjct: 304 TLNAKSIRCCLH 315 >3NH5-A nrPDB Length = 327 Score = 479 bits (1233), Expect = e-136, Method: Composition-based stats. Identities = 130/302 (43%), Positives = 188/302 (62%), Gaps = 1/302 (0%) Query: 6 AEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYID 65 + EP+ ++A+ GGTHGNE+ GV+L +WL+N E+ R P + NP A C RY+D Sbjct: 16 SREPLLRVAVTGGTHGNEMCGVYLARYWLQNPGELQRPSFSAMPVLANPAATAACCRYLD 75 Query: 66 CDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMGCTL 125 DLNR L L + D PYEV+RA+E+N L GPK + A+D DLHNTT+N G L Sbjct: 76 RDLNRSCTLTFLGSTATPDDPYEVKRARELNQLLGPKGTGQAFDFTLDLHNTTANTGVCL 135 Query: 126 ILEDSRNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQPHGV 185 I E S F + + HY++ +PC ++L E + + SI+K + + +GPQP GV Sbjct: 136 ISE-SNISFNLHLCHYLQRQNPGMPCRLFLYEPAGTETFSVESISKNGICLAMGPQPQGV 194 Query: 186 LRADILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAVIHPN 245 LRAD+ +MR ++ LDFI+ FN+G + P +D+Y+ + VD+PR GD+A +HP Sbjct: 195 LRADLFSRMRALVASILDFIELFNQGMDLPAFEMDIYRNLGSVDFPRTADGDLAGTVHPQ 254 Query: 246 LQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAK 305 LQD D++PL PG+P+F G+ + GD VYPVF+NEAAYYEK AF K+ K+ + Sbjct: 255 LQDHDFEPLRPGEPIFKLFSGEDVLYEGDSIVYPVFINEAAYYEKHVAFLKSEKIRVTVP 314 Query: 306 SI 307 ++ Sbjct: 315 AL 316 >2QJ8-A nrPDB Length = 332 Score = 140 bits (354), Expect = 6e-34, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 90/259 (34%), Gaps = 42/259 (16%) Query: 12 KIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCD---L 68 + I GG HGNEL G L +K E R G + NP AV+ TR D L Sbjct: 47 SLLITGGNHGNELQGPILARRLVKWLPEAQRCGRIIIVPEINPLAVQAWTRNTPIDGKNL 106 Query: 69 NRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMGCTLILE 128 NRVF + D R A I+ L P D V DLH+ C + Sbjct: 107 NRVFPGRS-------DGSVSERIADAISRLLLP-----VVDTVLDLHSFGPTWDCAPSII 154 Query: 129 DSRNDFLIQMFHYIKTCMA-PLPCSVYLIEHPSLKYATTRSIAKYP---VGIEVGPQPHG 184 + QM + A LP ++ L EH + + + E G G Sbjct: 155 SHPIADIDQMTKTVSISKAFKLPVTL-LWEHNETDGMFDTLVHRQGKTFICTEFG---GG 210 Query: 185 VLRADILDQMRRMLKHALDFIQRFNEGKEFPPC-AIDVYKIMEKVDY------------P 231 V+ A+ L +++ L + E+P + +E P Sbjct: 211 VVSAEALTIYEAGVRNGLIALGLVKGKAEYPTFRQQKTGQTLETTSSDQLKSPSPGIFEP 270 Query: 232 R------NESGDVAAVIHP 244 R E GDV V+HP Sbjct: 271 RCSVMDEVEQGDVVGVLHP 289 >3NA6-A nrPDB Length = 331 Score = 57.7 bits (138), Expect = 5e-09, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 61/202 (30%), Gaps = 28/202 (13%) Query: 11 KKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCD--- 67 K + G HG+E G + G + N A R D Sbjct: 50 KTALLTGANHGDEYEGPVALQELAATTRAEDVTGRLIIVPYFNYPAFRASARTSPIDRGN 109 Query: 68 LNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMG----- 122 LNR F D + A P DV D H+ + Sbjct: 110 LNRAFPGR-------PDGTVTQKIADYFQRTLLPMA-----DVAVDFHSGGKTLDFVPFA 157 Query: 123 CTLILEDSRNDFLIQ--MFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGP 180 ILED ++Q F ++ AP + I+ + + K V E+G Sbjct: 158 AAHILEDK----VLQDACFAAMQAFNAPYSVQLLEIDSEGMYDTAVEEMGKVLVTTELGG 213 Query: 181 QPHGVLRADILDQ--MRRMLKH 200 R++ + + +R +L H Sbjct: 214 GGMSTARSNAIAKKGLRNVLIH 235 >3CDX-A nrPDB Length = 354 Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 15/115 (13%) Query: 13 IAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYID---CDLN 69 + + GG HG+E G ++ + G + N A++ TR D+N Sbjct: 56 VLLTGGVHGDEYEGQIAISDLARRLRPEEVQGRVIMLPAVNMPAIQSDTRLSPVDGRDIN 115 Query: 70 RVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMGCT 124 R F + + A ++ + P D+ D+H + T Sbjct: 116 RCFPGD-------PRGTFSQMLAHFLDSVILPMA-----DISVDMHTAGHSYDST 158 >3B2Y-A nrPDB Length = 275 Score = 39.2 bits (90), Expect = 0.002, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 5/101 (4%) Query: 3 SCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLK--NGAEVHRAGLEVKPFITNPRAVEKC 60 S + + I G HG E G + + H+L+ A R L + P + NP + Sbjct: 59 SASQRSDLPSLLISSGFHGEEAAGPWGMLHFLRGLQPALFERVNLSLLP-LVNPTGFKAG 117 Query: 61 TRY--IDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLF 99 R+ + NR F LEN +E E + E L Sbjct: 118 HRFNRFGENPNRGFTLENGKPTPNEHTSLEGKLLLEHAQLL 158 >2QVP-A nrPDB Length = 275 Score = 37.3 bits (85), Expect = 0.008, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 5/94 (5%) Query: 10 IKKIAIFGGTHGNELTGVFLVTHWLKNG-AEV-HRAGLEVKPFITNPRAVEKCTRYIDC- 66 + + I G HG E G + + H+L E+ R L V P + NP K R+ + Sbjct: 65 LPNLLISAGFHGEESAGPWGLLHFLSQLDGELFKRVNLSVLP-LVNPTGFAKGHRFNELG 123 Query: 67 -DLNRVFDLENLSKEMSEDLPYEVRRAQEINHLF 99 + NR F +EN + D E R E HL Sbjct: 124 ENPNRGFFIENGKAKPGADTSAEGRILLEHAHLL 157 >1YW6-A nrPDB Length = 335 Score = 36.2 bits (82), Expect = 0.019, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 9 PIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGL-EVKPFITNPRAVEKCTRYIDCD 67 P + I G HGNE V ++ L + + + NP A+++ RY D Sbjct: 47 PQGALVISAGIHGNETAPVEMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSD 106 Query: 68 LNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGP--KNSDDAYDVVFDLHN 116 +NR+F S E RA+E+ ++ DLH Sbjct: 107 MNRMFGGRWQLFAESG----ETCRARELEQCLEDFYDQGKESVRWHLDLHT 153 >2G9D-A nrPDB Length = 350 Score = 35.4 bits (80), Expect = 0.033, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 17/112 (15%) Query: 11 KKIAIFGGTHGNELTGVFLVTHWLKNG-----AEVHRAGLEVKPFITNPRAVEKCTRYID 65 K + I G HG+E + L+ W+ + R + +P+A + R+I+ Sbjct: 54 KNMVISCGIHGDETAPMELLDKWIDDIVSGFQPVAERCLFI----MAHPQATVRHVRFIE 109 Query: 66 CDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGP--KNSDDAYDVVFDLH 115 +LNR+FD K + E+ A + L N+D+ DLH Sbjct: 110 QNLNRLFD----DKPHTP--STELAIADNLKVLLRQFFANTDEHSRWHLDLH 155 >1YW4-A nrPDB Length = 341 Score = 34.2 bits (77), Expect = 0.073, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Query: 12 KIAIFGGTHGNELTGVFLVTHWLKNGAEVHRA-GLEVKPFITNPRAVEKCTRYIDCDLNR 70 + + G HGNE + +V L + A A + N A+ + RY + D+NR Sbjct: 48 SVLLSCGVHGNETAPIEVVDGMLTDIAAGQLALNCRLLVMFANLDAIRQGVRYGNYDMNR 107 Query: 71 VFDLENLSKEMSEDLPYEVRRAQ 93 +F+ + +LP VR A+ Sbjct: 108 LFNG---AHARHPELPESVRAAE 127 >4OKO-A nrPDB Length = 312 Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 13 IAIFGGTHGNELTGVFLVTHWLKNGA-EVHRAGLEVKPFITNPRAVEKCTRYID--CDLN 69 + + GG HG E +GV + + A E R V +P E R+ D N Sbjct: 79 VLVTGGVHGYETSGVQGAISFAQTRALEFARDYNIVILPCLSPWGYETINRWNPNALDPN 138 Query: 70 RVFDLENLSKEMSEDLPY 87 R F LE+ +E + Y Sbjct: 139 RSFYLESGCQEAVLAMKY 156 >2BCO-A nrPDB Length = 350 Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 8 EPIKKIAIFGGTHGNELTGVFLVTHWLKNGAE-VHRAGLEVKPFITNPRAVEKCTRYIDC 66 + K I I G HG+E + LV +K+ + I +P + TR+++ Sbjct: 51 QETKNIIISCGIHGDETAPMELVDSIIKDIESGFQKVDARCLFIIAHPESTLAHTRFLEE 110 Query: 67 DLNRVFD 73 +LNR+FD Sbjct: 111 NLNRLFD 117 >3IEH-A nrPDB Length = 276 Score = 31.9 bits (71), Expect = 0.39, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 5/101 (4%) Query: 3 SCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAE--VHRAGLEVKPFITNPRAVEKC 60 S A+ + + I G HG E G + + H+L + R L + P + NP + Sbjct: 59 SPAAKSGLPSLLISAGFHGEESAGPWGLLHFLSEASADLFERVNLSLLP-LVNPTGFSRG 117 Query: 61 TRYIDC--DLNRVFDLENLSKEMSEDLPYEVRRAQEINHLF 99 R+ + NR F EN + +E E + + L Sbjct: 118 HRFNKYGENPNRGFVFENGKPKANEHTSVEGKLLLDHAQLL 158 >2O1X-A nrPDB Length = 629 Score = 30.8 bits (68), Expect = 0.80, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 227 KVDYPRNESGDVAAVIHPNLQDQDWKPLHPGDPVFVSLDGKVIPL 271 + YPR + V A P+L+ +W+ L GD V + GK + Sbjct: 475 AIRYPRGNTAQVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDY 519 >4TUF-A nrPDB Length = 346 Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%) Query: 10 IKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCDLN 69 +K + +FG GN + +W ++ G P + T D + Sbjct: 19 LKGVNVFGFETGNHVMHGLWARNWKDMIVQMQGLGFNAVRLPFCPATLRSDTMPASIDYS 78 Query: 70 RVFDLENLSKEMSEDLPYEVRRAQEINHLF 99 R DL+ L+ D A+ + L Sbjct: 79 RNADLQGLTSLQILDKVIAEFNARGMYVLL 108 >4E2O-A nrPDB Length = 454 Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 33 WLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCDLNRVFDLENLSKEMSEDLPYEVRRA 92 W+ ++ + EVK ++ + A + + D D R+ + ++ K ++ EV+ Sbjct: 154 WVYGLPDLAQENPEVKTYLID--AAKWWIKETDIDGYRLDTVRHVPKSFWQEFAKEVKSV 211 Query: 93 QEINHLFGPKNSDD 106 ++ L G SDD Sbjct: 212 KKDFFLLGEVWSDD 225 >1O9R-A nrPDB Length = 162 Score = 28.1 bits (61), Expect = 5.3, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 190 ILDQMRRMLKHALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAVIHPNLQDQ 249 I +++ ++ AL +Q + + D+YKI + +D G+VA +I + D Sbjct: 69 IAERVVQLGGTALGSLQAVSSTTKLKAYPTDIYKIHDHLDALIERYGEVANMIRKAIDDS 128 Query: 250 DWKPLHPGDP 259 D GDP Sbjct: 129 D----EAGDP 134 >3MF1-A nrPDB Length = 346 Score = 27.3 bits (59), Expect = 8.8, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 172 YPVGIEVGPQPHGVLRADI-LDQMRRMLKHALDFIQRF 208 YP+ GP P G LR D+ D RR LD +Q F Sbjct: 155 YPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSF 192 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.316 0.138 0.398 Lambda K H 0.267 0.0415 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,424,976 Number of Sequences: 36641 Number of extensions: 513631 Number of successful extensions: 1250 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 1226 Number of HSP's gapped (non-prelim): 41 length of query: 312 length of database: 10,336,785 effective HSP length: 97 effective length of query: 215 effective length of database: 6,782,608 effective search space: 1458260720 effective search space used: 1458260720 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.3 bits)