BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9QZ85 (413 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4LV5-B nrPDB 849 0.0 5L22-B nrPDB 34 0.11 5LAD-A nrPDB 34 0.11 4KV9-A nrPDB 33 0.31 4B2G-A nrPDB 33 0.32 5OWV-A nrPDB 32 0.63 5AR1-A nrPDB 32 0.74 4MKI-B nrPDB 31 1.1 5FHF-A nrPDB 30 1.4 4WNZ-A nrPDB 30 1.5 3R9W-A nrPDB 30 1.7 6QUZ-A nrPDB 30 1.7 2P67-A nrPDB 30 2.0 2QAG-B nrPDB 30 2.1 3RKO-J nrPDB 30 2.2 3HJN-A nrPDB 30 2.8 6QUZ-B nrPDB 29 3.2 3LXX-A nrPDB 29 3.2 5OLC-A nrPDB 29 3.2 4Z54-A nrPDB 29 3.3 5UCV-A nrPDB 29 3.5 3ZJC-A nrPDB 29 4.3 4Q7K-A nrPDB 29 4.6 5CYO-A nrPDB 28 5.1 3DEF-A nrPDB 28 5.6 2R6F-A nrPDB 28 8.0 5GKO-A nrPDB 28 8.1 3WG6-A nrPDB 28 9.3 >4LV5-B nrPDB Length = 423 Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/413 (100%), Positives = 413/413 (100%) Query: 1 MGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISD 60 MGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISD Sbjct: 11 MGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISD 70 Query: 61 ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 120 ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP Sbjct: 71 ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 130 Query: 121 NVVFWDLPGIGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 180 NVVFWDLPGIGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF Sbjct: 131 NVVFWDLPGIGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 190 Query: 181 VRTKVDSDITNEADGKPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 240 VRTKVDSDITNEADGKPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF Sbjct: 191 VRTKVDSDITNEADGKPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 250 Query: 241 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTF 300 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTF Sbjct: 251 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTF 310 Query: 301 LLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTDEETIQ 360 LLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTDEETIQ Sbjct: 311 LLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTDEETIQ 370 Query: 361 ERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN 413 ERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN Sbjct: 371 ERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN 423 >5L22-B nrPDB Length = 572 Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 9/54 (16%) Query: 48 KGNIQLTNSAI------SDALKEIDSSVLN---VAVTGETGSGKSSFINTLRGI 92 KG I+L+N + + L+ I+ +L VA+ G +GSGKSS + T+ GI Sbjct: 329 KGEIELSNVVVVPPEGKTPVLRNINMRILPGEFVAIIGPSGSGKSSLVRTILGI 382 >5LAD-A nrPDB Length = 404 Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Query: 72 VAVTGETGSGKSSFINTLRG----IGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDL 127 + V G GKSSF+N L G I +E G T V +ME +P + V D Sbjct: 12 IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTT-TDPVYKSMELYP-----VGPVTLVDT 65 Query: 128 PGIGSTNFPPNTYLEKMK--FYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 PG+ +EK + FY D I+++ + + D+ M+ F V K+ Sbjct: 66 PGLDDVGELGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEMEIPFVVVVNKI 125 Query: 186 D 186 D Sbjct: 126 D 126 >4KV9-A nrPDB Length = 412 Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 6/38 (15%) Query: 52 QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL 89 QL N AIS V N+ GETG GKS+ + TL Sbjct: 30 QLVNKAISQGF------VFNILCVGETGIGKSTLLETL 61 >4B2G-A nrPDB Length = 609 Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 19/111 (17%) Query: 113 PYKHPNIPNVVFWDLPGIGSTNFPPN----TYLEKMKFYEYDFFIIISATRFKKNDIDIA 168 P++H +IP S + PP ++E K YE R++ DI Sbjct: 371 PHEHSSIPL----------SRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRV 420 Query: 169 KAISMMKKEFYFVRTK-----VDSDITNEADGKPQTFDKEKVLQDIRLNCV 214 +F+FVR K +DSD T+EA+ + + K+L+++ + V Sbjct: 421 TGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVV 471 >5OWV-A nrPDB Length = 732 Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 14/94 (14%) Query: 39 LNLIELRMRKGNI-QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL-----RGI 92 LN I L ++K + + S + L++ + N+A+TG +GKSS +N L G+ Sbjct: 131 LNTINLELQKLSFDENLKSRLQKTLEKFQNLEFNIAITGVMNAGKSSLLNALLKEDFLGV 190 Query: 93 GNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126 N E A T + Y + FWD Sbjct: 191 SNIPETANLTVL--------SYGKSEEAKIYFWD 216 >5AR1-A nrPDB Length = 303 Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust. Identities = 12/20 (60%), Positives = 17/20 (85%) Query: 72 VAVTGETGSGKSSFINTLRG 91 V + G++GSG+S+FINTL G Sbjct: 30 VMIVGQSGSGRSTFINTLCG 49 >4MKI-B nrPDB Length = 298 Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 61 ALKEIDSSVLN---VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 108 ALK+I+ S+ + V + G TGSGKS+ I L G+ +G +++T Sbjct: 26 ALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDIT 76 >5FHF-A nrPDB Length = 433 Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 18/106 (16%) Query: 71 NVAVTGETGSGKSSFINTL-RGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129 NV VTG+ GSGK++F+ L G AA TG+ + N V L G Sbjct: 23 NVFVTGKAGSGKTTFLKYLIEKSGKNCIVAAPTGIAAI----------NAGGVTLHSLFG 72 Query: 130 IGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK 175 I P LE KF EY +++ K ++ I ISM++ Sbjct: 73 IPFGPITPYDRLEN-KFSEYKVELLL------KMELLIIDEISMVR 111 >4WNZ-A nrPDB Length = 301 Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 26/48 (54%) Query: 241 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFA 288 P+++++ DL + NF +P +TD+ I + + ++ LE FA Sbjct: 107 PLVLNRFKRDLELAGVKNFQTEIPELTDTAIASEEITVDNKVILEEFA 154 >3R9W-A nrPDB Length = 307 Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%) Query: 72 VAVTGETGSGKSSFINTLRG----IGNEEEGAAKTGVVEVTMERHPYKHPNIPN---VVF 124 VA+ G+ GKS+ +N L G I + + G + V+ V NIPN ++F Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK---------NIPNEAQIIF 62 Query: 125 WDLPGI 130 D PGI Sbjct: 63 LDTPGI 68 >6QUZ-A nrPDB Length = 587 Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 19/27 (70%) Query: 72 VAVTGETGSGKSSFINTLRGIGNEEEG 98 VAV GETGSGKS+ +N + + + E G Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERG 398 >2P67-A nrPDB Length = 341 Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 24 FKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKS 83 ++ G + + + L+E R + Q ++ + DA+ + L + VTG G+GKS Sbjct: 13 IRRLRQGERATLAQAMTLVESRHPRH--QALSTQLLDAIMPYCGNTLRLGVTGTPGAGKS 70 Query: 84 SFI 86 +F+ Sbjct: 71 TFL 73 >2QAG-B nrPDB Length = 427 Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 52 QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT 102 QL N ++S N+ GETG GKS+ ++TL E E A T Sbjct: 31 QLVNKSVSQGF------CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHT 75 >3RKO-J nrPDB Length = 184 Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 20/26 (76%) Query: 259 FMVSLPNITDSVIEKKRQFLKQRIWL 284 F+V + N+ S IE++RQ+LK ++W+ Sbjct: 69 FVVMMLNLGGSEIEQERQWLKPQVWI 94 >3HJN-A nrPDB Length = 197 Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Query: 247 LISDLPIYKRHNFMVSLPNITDSVIEKK---RQFLKQRIW-LEGFAADLVNIIPSLTFLL 302 L++++ Y + V L TDS + + R K+ + L FA D +IP LTF + Sbjct: 71 LVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATD--GLIPDLTFYI 128 Query: 303 DSDLET-LKKSMKFYR 317 D D+ET LK+ + R Sbjct: 129 DVDVETALKRKGELNR 144 >6QUZ-B nrPDB Length = 599 Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%) Query: 42 IELRMRKGNIQLTNSAIS-----DALKEIDSSV---LNVAVTGETGSGKSSFINTL 89 +ELR +G I+ N S LK+I + VA+ G TGSGK++ +N L Sbjct: 346 VELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401 >3LXX-A nrPDB Length = 239 Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 63 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPNIPN 121 +E +S L + + G+TG+GKS+ N++ G G A + + +R +K + Sbjct: 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETEL-- 80 Query: 122 VVFWDLPGIGSTNFP 136 V D PGI T P Sbjct: 81 -VVVDTPGIFDTEVP 94 >5OLC-A nrPDB Length = 396 Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 23 YFKKFNTGRKIISQEILNLIELR-----MRKGNIQLTNSAISDALKEIDSSVLNVAVTGE 77 +F F G++ I E+L R R G +Q SAI AL +I +LN+ V+ Sbjct: 69 FFTPFLLGKEAIGHEVLWQEMYRRSMDYARSGVLQAAISAIDVALWDIKGKLLNLPVSVL 128 Query: 78 TGSGKSSFI 86 G K+ I Sbjct: 129 LGGVKNPII 137 >4Z54-A nrPDB Length = 287 Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 21/111 (18%) Query: 70 LNVAVTGETGSGKSSFINTL--------RGIGNEEEGAAKTGVVEVTMERHPYKHPNIP- 120 N+ V G++G GKS+ +NTL N EE KT VE+ H + + Sbjct: 20 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKM 77 Query: 121 NVVFWDLPGIGSTNFPPNTY--LEKMKFYEYDFFIIISATRFKKNDIDIAK 169 + D PG G N + +EK +Y+ F+ K +++IA+ Sbjct: 78 KLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFL--------KEEVNIAR 120 >5UCV-A nrPDB Length = 217 Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 20/30 (66%) Query: 60 DALKEIDSSVLNVAVTGETGSGKSSFINTL 89 + LK++ + L +A G + +GKSS INTL Sbjct: 22 NHLKDLPDTPLEIAFVGRSNAGKSSAINTL 51 >3ZJC-A nrPDB Length = 305 Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 61 ALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 ++ E + L + + G+TGSGKS+ NT+ G Sbjct: 5 SMAESEDRSLRIVLVGKTGSGKSATANTILG 35 >4Q7K-A nrPDB Length = 250 Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 19/27 (70%) Query: 72 VAVTGETGSGKSSFINTLRGIGNEEEG 98 VAV GETGSGKS+ +N + + + E G Sbjct: 34 VAVLGETGSGKSTLMNLIPRLIDPERG 60 >5CYO-A nrPDB Length = 274 Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 70 LNVAVTGETGSGKSSFINTL 89 N+ V G++G GKS+ INTL Sbjct: 5 FNIMVVGQSGLGKSTLINTL 24 >3DEF-A nrPDB Length = 262 Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 20/30 (66%) Query: 62 LKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 LK+ D + + V V G+ G GKSS +N+L G Sbjct: 29 LKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 >2R6F-A nrPDB Length = 972 Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%) Query: 2 GQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISDA 61 G++ ++ +E + P+S TG ++ +G+K I E R G A Sbjct: 587 GEVVAAGTPEEVMNDPNSLTG---QYLSGKKFIPIPA----ERRRPDGRWLEVVGAREHN 639 Query: 62 LKEIDSSV---LNVAVTGETGSGKSSFIN 87 LK + + VAVTG +GSGKS+ +N Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668 >5GKO-A nrPDB Length = 671 Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Query: 62 LKEIDSSVLN---VAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 LK ID ++ VA+ G++GSGKS+ +N L + G+ K Sbjct: 33 LKGIDLTIYEGELVAIVGQSGSGKSTLMNILGCLDRPTSGSYK 75 >3WG6-A nrPDB Length = 307 Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 8/81 (9%) Query: 13 NNDLPS-SFTGYFKKFNTGRKIISQEILNLIELRMRKG-------NIQLTNSAISDALKE 64 N +P+ +F K F G + ++++ +EL +R G I TN I ALK Sbjct: 16 GNKIPAVAFGTGTKYFKRGHNDLDKQLIGTLELALRSGFRHIDGAEIYGTNKEIGIALKN 75 Query: 65 IDSSVLNVAVTGETGSGKSSF 85 + + +V +T + SG ++ Sbjct: 76 VGLNRKDVFITDKYNSGNHTY 96 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4LV5-B nrPDB 871 0.0 Sequences not found previously or not previously below threshold: 5LAD-A nrPDB 35 0.042 5L22-B nrPDB 34 0.10 4B2G-A nrPDB 33 0.29 4MKI-B nrPDB 33 0.34 4WNZ-A nrPDB 32 0.60 4KV9-A nrPDB 32 0.66 5FHF-A nrPDB 31 0.95 3HJN-A nrPDB 31 1.0 5AR1-A nrPDB 31 1.0 6QUZ-A nrPDB 31 1.1 4Q7K-A nrPDB 31 1.1 6QUZ-B nrPDB 31 1.3 3R9W-A nrPDB 30 1.5 5OWV-A nrPDB 30 1.6 2QAG-B nrPDB 30 1.6 4Z54-A nrPDB 30 1.6 3LXX-A nrPDB 30 2.0 2P67-A nrPDB 30 2.5 5GKO-A nrPDB 30 2.9 3WG6-A nrPDB 29 3.2 3RKO-J nrPDB 29 3.2 5UCV-A nrPDB 29 3.3 3DEF-A nrPDB 29 4.5 2J04-A nrPDB 28 5.0 3ZJC-A nrPDB 28 5.4 3UX8-A nrPDB 28 5.7 2R6F-A nrPDB 28 5.7 5CYO-A nrPDB 28 5.9 5LJ6-A nrPDB 28 7.3 4HUQ-A nrPDB 28 7.5 1H65-A nrPDB 28 7.7 CONVERGED! >4LV5-B nrPDB Length = 423 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 413/413 (100%), Positives = 413/413 (100%) Query: 1 MGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISD 60 MGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISD Sbjct: 11 MGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISD 70 Query: 61 ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 120 ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP Sbjct: 71 ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 130 Query: 121 NVVFWDLPGIGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 180 NVVFWDLPGIGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF Sbjct: 131 NVVFWDLPGIGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 190 Query: 181 VRTKVDSDITNEADGKPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 240 VRTKVDSDITNEADGKPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF Sbjct: 191 VRTKVDSDITNEADGKPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 250 Query: 241 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTF 300 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTF Sbjct: 251 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTF 310 Query: 301 LLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTDEETIQ 360 LLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTDEETIQ Sbjct: 311 LLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTDEETIQ 370 Query: 361 ERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN 413 ERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN Sbjct: 371 ERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN 423 >5LAD-A nrPDB Length = 404 Score = 35.4 bits (80), Expect = 0.042, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Query: 72 VAVTGETGSGKSSFINTLRG----IGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDL 127 + V G GKSSF+N L G I +E G T V +ME +P + V D Sbjct: 12 IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTT-TDPVYKSMELYP-----VGPVTLVDT 65 Query: 128 PGIGSTNFPPNTYLEKMK--FYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 PG+ +EK + FY D I+++ + + D+ M+ F V K+ Sbjct: 66 PGLDDVGELGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEMEIPFVVVVNKI 125 Query: 186 D 186 D Sbjct: 126 D 126 >5L22-B nrPDB Length = 572 Score = 34.2 bits (77), Expect = 0.10, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 9/60 (15%) Query: 42 IELRMRKGNIQLTNSAI------SDALKEIDSSVLN---VAVTGETGSGKSSFINTLRGI 92 ++L KG I+L+N + + L+ I+ +L VA+ G +GSGKSS + T+ GI Sbjct: 323 VKLPEPKGEIELSNVVVVPPEGKTPVLRNINMRILPGEFVAIIGPSGSGKSSLVRTILGI 382 >4B2G-A nrPDB Length = 609 Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 19/111 (17%) Query: 113 PYKHPNIPNVVFWDLPGIGSTNFPPN----TYLEKMKFYEYDFFIIISATRFKKNDIDIA 168 P++H +IP S + PP ++E K YE R++ DI Sbjct: 371 PHEHSSIPL----------SRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRV 420 Query: 169 KAISMMKKEFYFVRTK-----VDSDITNEADGKPQTFDKEKVLQDIRLNCV 214 +F+FVR K +DSD T+EA+ + + K+L+++ + V Sbjct: 421 TGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVV 471 >4MKI-B nrPDB Length = 298 Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 61 ALKEIDSSVLN---VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 108 ALK+I+ S+ + V + G TGSGKS+ I L G+ +G +++T Sbjct: 26 ALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDIT 76 >4WNZ-A nrPDB Length = 301 Score = 31.5 bits (70), Expect = 0.60, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 26/48 (54%) Query: 241 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFA 288 P+++++ DL + NF +P +TD+ I + + ++ LE FA Sbjct: 107 PLVLNRFKRDLELAGVKNFQTEIPELTDTAIASEEITVDNKVILEEFA 154 >4KV9-A nrPDB Length = 412 Score = 31.5 bits (70), Expect = 0.66, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 6/38 (15%) Query: 52 QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL 89 QL N AIS V N+ GETG GKS+ + TL Sbjct: 30 QLVNKAISQGF------VFNILCVGETGIGKSTLLETL 61 >5FHF-A nrPDB Length = 433 Score = 31.2 bits (69), Expect = 0.95, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 18/108 (16%) Query: 71 NVAVTGETGSGKSSFINTL-RGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129 NV VTG+ GSGK++F+ L G AA TG+ + N V L G Sbjct: 23 NVFVTGKAGSGKTTFLKYLIEKSGKNCIVAAPTGIAAI----------NAGGVTLHSLFG 72 Query: 130 IGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKE 177 I P LE KF EY +++ K ++ I ISM++ + Sbjct: 73 IPFGPITPYDRLEN-KFSEYKVELLL------KMELLIIDEISMVRPD 113 >3HJN-A nrPDB Length = 197 Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Query: 247 LISDLPIYKRHNFMVSLPNITDSVIEKK---RQFLKQRIW-LEGFAADLVNIIPSLTFLL 302 L++++ Y + V L TDS + + R K+ + L FA D +IP LTF + Sbjct: 71 LVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATD--GLIPDLTFYI 128 Query: 303 DSDLET-LKKSMKFYR 317 D D+ET LK+ + R Sbjct: 129 DVDVETALKRKGELNR 144 >5AR1-A nrPDB Length = 303 Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 17/22 (77%) Query: 70 LNVAVTGETGSGKSSFINTLRG 91 V + G++GSG+S+FINTL G Sbjct: 28 FTVMIVGQSGSGRSTFINTLCG 49 >6QUZ-A nrPDB Length = 587 Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV 107 VAV GETGSGKS+ +N + + + E G + ++V Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 >4Q7K-A nrPDB Length = 250 Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV 107 VAV GETGSGKS+ +N + + + E G + ++V Sbjct: 34 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 69 >6QUZ-B nrPDB Length = 599 Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 19/93 (20%) Query: 14 NDLPSSFTGYFKKFNTGRKIISQEILNL---------IELRMRKGNIQLTNSAIS----- 59 N+L + F + +I EIL+L +ELR +G I+ N S Sbjct: 311 NELSNQFNMIQMALASAERIF--EILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK 368 Query: 60 DALKEIDSSV---LNVAVTGETGSGKSSFINTL 89 LK+I + VA+ G TGSGK++ +N L Sbjct: 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401 >3R9W-A nrPDB Length = 307 Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%) Query: 72 VAVTGETGSGKSSFINTLRG----IGNEEEGAAKTGVVEVTMERHPYKHPNIPN---VVF 124 VA+ G+ GKS+ +N L G I + + G + V+ V NIPN ++F Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK---------NIPNEAQIIF 62 Query: 125 WDLPGI 130 D PGI Sbjct: 63 LDTPGI 68 >5OWV-A nrPDB Length = 732 Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 14/94 (14%) Query: 39 LNLIELRMRKGNI-QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL-----RGI 92 LN I L ++K + + S + L++ + N+A+TG +GKSS +N L G+ Sbjct: 131 LNTINLELQKLSFDENLKSRLQKTLEKFQNLEFNIAITGVMNAGKSSLLNALLKEDFLGV 190 Query: 93 GNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126 N E A T + Y + FWD Sbjct: 191 SNIPETANLTVL--------SYGKSEEAKIYFWD 216 >2QAG-B nrPDB Length = 427 Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 52 QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT 102 QL N ++S N+ GETG GKS+ ++TL E E A T Sbjct: 31 QLVNKSVSQGF------CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHT 75 >4Z54-A nrPDB Length = 287 Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 21/111 (18%) Query: 70 LNVAVTGETGSGKSSFINTL--------RGIGNEEEGAAKTGVVEVTMERHPYKHPNIP- 120 N+ V G++G GKS+ +NTL N EE KT VE+ H + + Sbjct: 20 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKM 77 Query: 121 NVVFWDLPGIGSTNFPPNTY--LEKMKFYEYDFFIIISATRFKKNDIDIAK 169 + D PG G N + +EK +Y+ +F K +++IA+ Sbjct: 78 KLTVIDTPGFGDQINNENCWEPIEKYINEQYE--------KFLKEEVNIAR 120 >3LXX-A nrPDB Length = 239 Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 63 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPNIPN 121 +E +S L + + G+TG+GKS+ N++ G G A + + +R +K + Sbjct: 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETEL-- 80 Query: 122 VVFWDLPGIGSTNFP 136 V D PGI T P Sbjct: 81 -VVVDTPGIFDTEVP 94 >2P67-A nrPDB Length = 341 Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 25 KKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS 84 ++ G + + + L+E R + Q ++ + DA+ + L + VTG G+GKS+ Sbjct: 14 RRLRQGERATLAQAMTLVESRHPRH--QALSTQLLDAIMPYCGNTLRLGVTGTPGAGKST 71 Query: 85 FINTL 89 F+ Sbjct: 72 FLEAF 76 >5GKO-A nrPDB Length = 671 Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Query: 62 LKEIDSSVLN---VAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 LK ID ++ VA+ G++GSGKS+ +N L + G+ K Sbjct: 33 LKGIDLTIYEGELVAIVGQSGSGKSTLMNILGCLDRPTSGSYK 75 >3WG6-A nrPDB Length = 307 Score = 29.2 bits (64), Expect = 3.2, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Query: 9 KSDENNDLPS-SFTGYFKKFNTGRKIISQEILNLIELRMRKG-------NIQLTNSAISD 60 K N +P+ +F K F G + ++++ +EL +R G I TN I Sbjct: 12 KLSNGNKIPAVAFGTGTKYFKRGHNDLDKQLIGTLELALRSGFRHIDGAEIYGTNKEIGI 71 Query: 61 ALKEIDSSVLNVAVTGETGSGKSSF 85 ALK + + +V +T + SG ++ Sbjct: 72 ALKNVGLNRKDVFITDKYNSGNHTY 96 >3RKO-J nrPDB Length = 184 Score = 29.2 bits (64), Expect = 3.2, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 20/26 (76%) Query: 259 FMVSLPNITDSVIEKKRQFLKQRIWL 284 F+V + N+ S IE++RQ+LK ++W+ Sbjct: 69 FVVMMLNLGGSEIEQERQWLKPQVWI 94 >5UCV-A nrPDB Length = 217 Score = 29.2 bits (64), Expect = 3.3, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 62 LKEIDSSVLNVAVTGETGSGKSSFINTL 89 LK++ + L +A G + +GKSS INTL Sbjct: 24 LKDLPDTPLEIAFVGRSNAGKSSAINTL 51 >3DEF-A nrPDB Length = 262 Score = 28.8 bits (63), Expect = 4.5, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%) Query: 62 LKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 LK+ D + + V V G+ G GKSS +N+L G Sbjct: 29 LKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 >2J04-A nrPDB Length = 588 Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 22/37 (59%) Query: 368 QEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKT 404 +E + NG LL KNSFL+E F L+ + D T + T Sbjct: 487 REAPIYNGTLLMKNSFLEETFNLESFTADPETVTSTT 523 >3ZJC-A nrPDB Length = 305 Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 61 ALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 ++ E + L + + G+TGSGKS+ NT+ G Sbjct: 5 SMAESEDRSLRIVLVGKTGSGKSATANTILG 35 >3UX8-A nrPDB Length = 670 Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%) Query: 2 GQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISDA 61 G++ ++ +E + P+S TG ++ +G+K I E R G A Sbjct: 285 GEVVAAGTPEEVMNDPNSLTG---QYLSGKKFIPIPA----ERRRPDGRWLEVVGAREHN 337 Query: 62 LKEIDSSV---LNVAVTGETGSGKSSFIN 87 LK + + VAVTG +GSGKS+ +N Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366 >2R6F-A nrPDB Length = 972 Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%) Query: 2 GQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISDA 61 G++ ++ +E + P+S TG ++ +G+K I E R G A Sbjct: 587 GEVVAAGTPEEVMNDPNSLTG---QYLSGKKFIPIPA----ERRRPDGRWLEVVGAREHN 639 Query: 62 LKEIDSSV---LNVAVTGETGSGKSSFIN 87 LK + + VAVTG +GSGKS+ +N Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668 >5CYO-A nrPDB Length = 274 Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 70 LNVAVTGETGSGKSSFINTL 89 N+ V G++G GKS+ INTL Sbjct: 5 FNIMVVGQSGLGKSTLINTL 24 >5LJ6-A nrPDB Length = 664 Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Query: 62 LKEIDSSVLN---VAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 LK+I S+ VA+ G++GSGKS+ +N + + G++K Sbjct: 43 LKDISLSIERGDFVAIMGQSGSGKSTLMNIIGCLDTATGGSSK 85 >4HUQ-A nrPDB Length = 290 Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 19/39 (48%) Query: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME 110 +A+ G TGSGKS+ I L + G K +T E Sbjct: 36 LAIIGHTGSGKSTLIQQLNALLKPTSGTIKIDEFTITPE 74 >1H65-A nrPDB Length = 270 Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 20/30 (66%) Query: 62 LKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 LK+ D + L + V G+ G GKSS +N++ G Sbjct: 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.320 0.137 0.395 Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,863,721 Number of Sequences: 36641 Number of extensions: 727770 Number of successful extensions: 2321 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 47 Number of HSP's that attempted gapping in prelim test: 2264 Number of HSP's gapped (non-prelim): 100 length of query: 413 length of database: 10,336,785 effective HSP length: 99 effective length of query: 314 effective length of database: 6,709,326 effective search space: 2106728364 effective search space used: 2106728364 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)