BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9NRN7 (309 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2BYD-A nrPDB 615 e-177 1QR0-A nrPDB 82 2e-16 5CXD-A nrPDB 33 0.15 4JM7-A nrPDB 33 0.17 3POT-A nrPDB 33 0.23 1FTH-A nrPDB 32 0.28 1E6Y-A nrPDB 31 0.69 1E6V-A nrPDB 30 1.2 5N28-A nrPDB 30 1.8 5N1Q-A nrPDB 29 2.0 5A8R-A nrPDB 29 2.3 3HYK-A nrPDB 28 4.1 1U5U-A nrPDB 28 4.5 2JI5-A nrPDB 28 4.5 4FWU-A nrPDB 28 5.6 1YLQ-A nrPDB 28 5.7 4MUD-A nrPDB 28 5.8 5XUK-A nrPDB 28 6.3 >2BYD-A nrPDB Length = 323 Score = 615 bits (1587), Expect = e-177, Method: Compositional matrix adjust. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 14 MEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAE 73 MEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAE Sbjct: 24 MEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAE 83 Query: 74 KLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKT 133 KLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKT Sbjct: 84 KLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKT 143 Query: 134 SFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGF 193 SFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGF Sbjct: 144 SFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGF 203 Query: 194 ELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRKPDGSRH 253 ELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRKPDGSRH Sbjct: 204 ELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRKPDGSRH 263 Query: 254 QDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS 309 QDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS Sbjct: 264 QDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS 319 >1QR0-A nrPDB Length = 228 Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 14/156 (8%) Query: 40 IQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSS 99 I PE++E+ +F DA + G +++R +++ + + + IR GKP + Sbjct: 24 ISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQYQLDKSDIRFSTQEYGKPCIPD--- 80 Query: 100 NPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWET 159 P+ +FNISH G + + A + + +GIDI KT P I KR F+ E+ Sbjct: 81 --LPDAHFNISHSGRWVIGAFDSQ-PIGIDIEKTK-------PISLEIAKRFFSKTEYSD 130 Query: 160 IRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFEL 195 + + KD+ Q D FY W++KESFIK G GL L Sbjct: 131 LLA-KDKDEQTDYFYHLWSMKESFIKQEGKGLSLPL 165 >5CXD-A nrPDB Length = 122 Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 147 IMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 192 +++R T E +F E +++ +A KE+F KA+G GLG Sbjct: 28 LVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGLG 73 >4JM7-A nrPDB Length = 143 Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 147 IMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 192 +++R T E +F E +++ +A KE+F KA+G GLG Sbjct: 49 LVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGLG 94 >3POT-A nrPDB Length = 550 Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 21/112 (18%) Query: 16 GVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKL 75 G AF+ G + W L++ + E+ R+G + + + + IR Sbjct: 410 GCSTAFATGNAQTGLSGWYLSMY-LHKEQHSRLGFYGYDLQDQCGASNVFSIRG------ 462 Query: 76 NIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVG 127 +G P+ + + YPN+ N+ HQG+YA ++ P G Sbjct: 463 ------------DEGLPLELRGPN--YPNYAMNVGHQGEYAGISQAPHAARG 500 >1FTH-A nrPDB Length = 122 Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Query: 149 KRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVG---LGFELQRLEFDLSPL 205 KR T E E S K Q++ W+ KE+F KA+G G LGF+ DL L Sbjct: 29 KRVLTALEMERFTSLKGR-RQIEYLAGRWSAKEAFSKAMGTGISKLGFQ------DLEVL 81 Query: 206 NLDIGQVY 213 N + G Y Sbjct: 82 NNERGAPY 89 >1E6Y-A nrPDB Length = 569 Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 20/72 (27%) Query: 102 YPNFNFNISHQGDYAVLA------------AEPELQVGI--DIMKTSFP------GRGSI 141 YPN+ N+ HQG YA +A P L+V D++ +F GRG+I Sbjct: 494 YPNYAMNVGHQGGYAGIAQAAHSGRGDAFTVNPLLKVCFADDLLPFNFAEPRREFGRGAI 553 Query: 142 PEFFHIMKRKFT 153 EF +R Sbjct: 554 REFVPAGERSLV 565 >1E6V-A nrPDB Length = 553 Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 21/101 (20%) Query: 16 GVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKL 75 G AF+ G W L+ + + E + R+G + +A + A L +R Sbjct: 413 GCSTAFATGHAQAGLNGWYLS-QILHKEGQGRLGFYGYALQDQCGAANSLSVR------- 464 Query: 76 NIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYA 116 + +G P+ + + YPN+ N+ H G+YA Sbjct: 465 -----------SDEGLPLELRGPN--YPNYAMNVGHLGEYA 492 >5N28-A nrPDB Length = 552 Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 66 MIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSSNP-------YPNFNFNISHQGDYA 116 ++ K +L ++ Q A + D S+P YPN+ N+ HQG+YA Sbjct: 434 ILHKEYHSRLGFYGYDLQDQCGASNSLSIRNDESSPLELRGPNYPNYAMNVGHQGEYA 491 >5N1Q-A nrPDB Length = 553 Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust. Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 102 YPNFNFNISHQGDYA 116 YPN+ N+ HQG+YA Sbjct: 478 YPNYAMNVGHQGEYA 492 >5A8R-A nrPDB Length = 553 Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 102 YPNFNFNISHQGDYAVLAAEPELQVG 127 YPN+ N+ HQ +YA +A P G Sbjct: 477 YPNYAMNVGHQPEYAGIAQAPHAARG 502 >3HYK-A nrPDB Length = 122 Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Query: 148 MKRKFTNKEWETIRSFKDEWTQLDMFYRN-WALKESFIKAIGVGLGFELQRLEFDL 202 M+R T E + K ++L F +A KE++ KA+G G+G E+ L+ ++ Sbjct: 29 MERILTENERNVAKGLK--GSRLTEFVAGRFAAKEAYSKAVGTGIGKEVSFLDIEV 82 >1U5U-A nrPDB Length = 374 Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 232 ESKIDEHHFVAVALRKPDGSRHQDVPSQDDSKPTQRQFTILNFNDLMSSA----VPMTPE 287 + K EH F P RH ++ DD+ R F+I F D S V T E Sbjct: 82 DPKFPEHEFFTAGRTFPARLRHANLKYPDDAGADARSFSI-KFADSDSDGPLDIVMNTGE 140 Query: 288 DPSFWDCFCFTEEIPIRNG 306 FW+ + +P+ G Sbjct: 141 ANIFWNSPSLEDFVPVEEG 159 >2JI5-A nrPDB Length = 227 Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 14/94 (14%) Query: 226 KEWAFEESKIDEHHFVAVALRKPDGSR-HQDVPSQDDSKPTQRQF---------TILNFN 275 KE A++ +K+ E H VAV + +R + +V + +S T + F +L Sbjct: 25 KEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIA 84 Query: 276 DLMSSAVPMTPEDPSFWDCFCFTE--EIPIRNGT 307 L A P+ ED FW+ + + +IP+ GT Sbjct: 85 ALREKAYPVVVED--FWEAWKAVQLKKIPVMGGT 116 >4FWU-A nrPDB Length = 312 Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 218 LFLDGEEE-KEWAFEESKIDEHHFVAVALRKPDGSRHQDVPSQDD 261 +F DGEE KEW +S H A K GS+ Q P D Sbjct: 137 IFFDGEEAFKEWTDADSVYGSKHLAAKLASKRSGSQAQLAPRNID 181 >1YLQ-A nrPDB Length = 96 Score = 28.1 bits (61), Expect = 5.7, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 14/71 (19%) Query: 112 QGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKF----------TNKEWETIR 161 +GDY++ ++ ++ + D+ F R EFF + +KF T KEW+ + Sbjct: 28 EGDYSIGLSDIDVAIVSDV----FEDRNRKLEFFGKITKKFFDSPFEFHILTKKEWKMSK 83 Query: 162 SFKDEWTQLDM 172 F ++ +LD+ Sbjct: 84 RFIRKYRRLDL 94 >4MUD-A nrPDB Length = 235 Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 22/37 (59%) Query: 63 GRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSS 99 RL + KLV+++LN W +RL K K V+ + S+ Sbjct: 49 SRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISN 85 >5XUK-A nrPDB Length = 119 Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 164 KDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDL--SPLNLDIGQVYKE 215 KD+ + + F+ ALKE+ KA+ VG+G EL L+ + SP N + + KE Sbjct: 37 KDKSSSIAGFF---ALKEACSKALQVGIGKELSFLDIKISKSPKNAPLITLSKE 87 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2BYD-A nrPDB 577 e-165 1QR0-A nrPDB 231 3e-61 Sequences not found previously or not previously below threshold: 1FTH-A nrPDB 38 0.006 5XUK-A nrPDB 33 0.20 5CXD-A nrPDB 31 0.82 4JM7-A nrPDB 31 0.82 1U5U-A nrPDB 30 0.93 1PWU-A nrPDB 30 1.2 2BR3-A nrPDB 30 1.4 4FWU-A nrPDB 30 1.5 5FF7-A nrPDB 30 1.6 6OKK-B nrPDB 30 1.7 3JBP-B nrPDB 30 1.7 1MHQ-A nrPDB 30 1.8 4IKC-A nrPDB 29 2.6 2O8G-I nrPDB 29 3.1 4PKU-A nrPDB 28 3.7 3J9M-3 nrPDB 28 4.4 2JI5-A nrPDB 28 4.7 5XUM-A nrPDB 28 4.9 1E6Y-A nrPDB 28 5.6 3DSH-A nrPDB 27 7.8 3HYK-A nrPDB 27 8.4 3CP6-A nrPDB 27 8.8 CONVERGED! >2BYD-A nrPDB Length = 323 Score = 577 bits (1488), Expect = e-165, Method: Composition-based stats. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 14 MEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAE 73 MEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAE Sbjct: 24 MEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAE 83 Query: 74 KLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKT 133 KLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKT Sbjct: 84 KLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKT 143 Query: 134 SFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGF 193 SFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGF Sbjct: 144 SFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGF 203 Query: 194 ELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRKPDGSRH 253 ELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRKPDGSRH Sbjct: 204 ELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRKPDGSRH 263 Query: 254 QDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS 309 QDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS Sbjct: 264 QDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS 319 >1QR0-A nrPDB Length = 228 Score = 231 bits (589), Expect = 3e-61, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 40 IQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSS 99 I PE++E+ +F DA + G +++R +++ + + + IR GKP + Sbjct: 24 ISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQYQLDKSDIRFSTQEYGKPCIPD--- 80 Query: 100 NPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWET 159 P+ +FNISH G + + A + + +GIDI KT P I KR F+ E+ Sbjct: 81 --LPDAHFNISHSGRWVIGAFDSQ-PIGIDIEKTK-------PISLEIAKRFFSKTEYSD 130 Query: 160 IRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDL 202 + + KD+ Q D FY W++KESFIK G GL L L Sbjct: 131 LLA-KDKDEQTDYFYHLWSMKESFIKQEGKGLSLPLDSFSVRL 172 >1FTH-A nrPDB Length = 122 Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 9/89 (10%) Query: 127 GIDIMK-TSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIK 185 GIDI + S + E F KR T E E S K Q++ W+ KE+F K Sbjct: 8 GIDIEELASIESAVTRHEGF--AKRVLTALEMERFTSLKGR-RQIEYLAGRWSAKEAFSK 64 Query: 186 AIGVGLGFELQRLEF-DLSPLNLDIGQVY 213 A+G G+ +L F DL LN + G Y Sbjct: 65 AMGTGIS----KLGFQDLEVLNNERGAPY 89 >5XUK-A nrPDB Length = 119 Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Query: 126 VGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIK 185 +GIDI+ + + ++R + E I KD+ + + F+ ALKE+ K Sbjct: 2 IGIDIVSIARIEKCVKRFKMKFLERFLSPSE---IVLCKDKSSSIAGFF---ALKEACSK 55 Query: 186 AIGVGLGFELQRLEFDL--SPLNLDIGQVYKE 215 A+ VG+G EL L+ + SP N + + KE Sbjct: 56 ALQVGIGKELSFLDIKISKSPKNAPLITLSKE 87 >5CXD-A nrPDB Length = 122 Score = 30.8 bits (68), Expect = 0.82, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 25/47 (53%) Query: 146 HIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 192 +++R T E +F E +++ +A KE+F KA+G GLG Sbjct: 27 KLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGLG 73 Score = 27.7 bits (60), Expect = 6.9, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Query: 35 LAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKL------NIPWNHIRLQRTA 88 L R + E+ + F + +AGR ++ ++ L ++ +N I Sbjct: 28 LVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGLGKHVAFNDIDCYNDE 87 Query: 89 KGKPVLAKDSSNPYPNFNFNISHQGDYAV 117 GKP + + + +ISH YA+ Sbjct: 88 LGKPKIDYEGFI----VHVSISHTEHYAM 112 >4JM7-A nrPDB Length = 143 Score = 30.8 bits (68), Expect = 0.82, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 25/47 (53%) Query: 146 HIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 192 +++R T E +F E +++ +A KE+F KA+G GLG Sbjct: 48 KLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGLG 94 Score = 27.7 bits (60), Expect = 6.9, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Query: 35 LAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKL------NIPWNHIRLQRTA 88 L R + E+ + F + +AGR ++ ++ L ++ +N I Sbjct: 49 LVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGLGKHVAFNDIDCYNDE 108 Query: 89 KGKPVLAKDSSNPYPNFNFNISHQGDYAV 117 GKP + + + +ISH YA+ Sbjct: 109 LGKPKIDYEGFI----VHVSISHTEHYAM 133 >1U5U-A nrPDB Length = 374 Score = 30.4 bits (67), Expect = 0.93, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 232 ESKIDEHHFVAVALRKPDGSRHQDVPSQDDSKPTQRQFTILNFNDLMSSA----VPMTPE 287 + K EH F P RH ++ DD+ R F+I F D S V T E Sbjct: 82 DPKFPEHEFFTAGRTFPARLRHANLKYPDDAGADARSFSI-KFADSDSDGPLDIVMNTGE 140 Query: 288 DPSFWDCFCFTEEIPIRNG 306 FW+ + +P+ G Sbjct: 141 ANIFWNSPSLEDFVPVEEG 159 >1PWU-A nrPDB Length = 776 Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 23/109 (21%) Query: 142 PEFFHIMKRK------FTNKEWET--IRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGF 193 PE F+ M + + +E + + S ++W ++ Y++W+ + G GL Sbjct: 238 PEAFNYMDKFNEQEINLSLEELKDQRMLSRYEKWEKIKQHYQHWS---DSLSEEGRGL-- 292 Query: 194 ELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVA 242 L++L+ + P DI + +EEKE + +ID F++ Sbjct: 293 -LKKLQIPIEPKKDDI--------IHSLSQEEKE-LLKRIQIDSSDFLS 331 >2BR3-A nrPDB Length = 236 Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 17/38 (44%) Query: 152 FTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGV 189 F+ +W +R KD TQ W L+ I +GV Sbjct: 53 FSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGV 90 >4FWU-A nrPDB Length = 312 Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 218 LFLDGEEE-KEWAFEESKIDEHHFVAVALRKPDGSRHQDVPSQDD 261 +F DGEE KEW +S H A K GS+ Q P D Sbjct: 137 IFFDGEEAFKEWTDADSVYGSKHLAAKLASKRSGSQAQLAPRNID 181 >5FF7-A nrPDB Length = 327 Score = 29.7 bits (65), Expect = 1.6, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Query: 96 KDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNK 155 K + N P F +H+ + A+ E + G+D++K P E F + FT + Sbjct: 171 KIADNASPEFAKVKAHKVNEAMKVFSKE-RFGVDVLKVEVPVNMKFVEGFADGEVLFTKE 229 Query: 156 EWETIRSFKDEWTQLDMFY 174 E ++F+D+ D+ Y Sbjct: 230 EAA--QAFRDQEASTDLPY 246 >6OKK-B nrPDB Length = 262 Score = 29.7 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Query: 152 FTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGL---GFELQRLEFDLSPLNLD 208 FT KEW +++ K RN+ K K IG L + + E +L+ LN D Sbjct: 24 FTKKEWYDLKAPK------MFLVRNFG-KTLVTKTIGKKLATDSLKGRIYEVNLADLNND 76 Query: 209 IGQVYKETRLFLD 221 Q +K+ +L D Sbjct: 77 EDQAHKKIKLSCD 89 >3JBP-B nrPDB Length = 210 Score = 29.7 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Query: 152 FTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGL---GFELQRLEFDLSPLNLD 208 FT KEW +++ K RN+ K K IG L + + E +L+ LN D Sbjct: 1 FTKKEWYDLKAPK------MFLVRNFG-KTLVTKTIGKKLATDSLKGRIYEVNLADLNND 53 Query: 209 IGQVYKETRLFLD 221 Q +K+ +L D Sbjct: 54 EDQAHKKIKLSCD 66 >1MHQ-A nrPDB Length = 148 Score = 29.7 bits (65), Expect = 1.8, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 15/66 (22%) Query: 28 PSRAEWLLAVRSIQPEEKE-------------RIGQFVFARDAKAAMAGRLMIRKLVAEK 74 P+ A WLLA + P+EKE G+ + AK L+ K+++ K Sbjct: 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI--KVLSPK 93 Query: 75 LNIPWN 80 W Sbjct: 94 YLGSWA 99 >4IKC-A nrPDB Length = 281 Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 29 SRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKLNIPWN--HIRLQR 86 +RA+ L+ + + + R Q+ + + G ++I KL+ E + I W ++++R Sbjct: 114 TRAKTLVMLTQCFEKGRIRCHQYWPEDNKPVTVFGDIVITKLM-EDVQIDWTIRDLKIER 172 >2O8G-I nrPDB Length = 206 Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 40 IQPEEKERIGQFVFARDAKAAMAGRL-MIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDS 98 + PEE+E+ QF R + + R+L+++ L+ + TA G + ++S Sbjct: 130 LSPEEREKKRQFEMKRKLHYNEGLNIKLARQLISKDLHDDDEDEEMAETADGDSMNVEES 189 Query: 99 SN 100 S Sbjct: 190 SQ 191 >4PKU-A nrPDB Length = 519 Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 15/85 (17%) Query: 158 ETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETR 217 S ++W ++ Y++W+ + G GL L++L+ + P DI Sbjct: 1 SNALSRYEKWEKIKQHYQHWS---DSLSEEGRGL---LKKLQIPIEPKKDDI-------- 46 Query: 218 LFLDGEEEKEWAFEESKIDEHHFVA 242 + +EEKE + +ID F++ Sbjct: 47 IHSLSQEEKE-LLKRIQIDSSDFLS 70 >3J9M-3 nrPDB Length = 188 Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 23 CGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRL 65 CG W+ +A + + P K+R+ +FVF ++ + ++ Sbjct: 119 CGLWVRRKAGYKKKLWKKTPARKKRLREFVFCNKTQSKLLDKM 161 >2JI5-A nrPDB Length = 227 Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 14/94 (14%) Query: 226 KEWAFEESKIDEHHFVAVALRKPDGSR-HQDVPSQDDSKPTQRQF---------TILNFN 275 KE A++ +K+ E H VAV + +R + +V + +S T + F +L Sbjct: 25 KEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIA 84 Query: 276 DLMSSAVPMTPEDPSFWDCFCFTE--EIPIRNGT 307 L A P+ ED FW+ + + +IP+ GT Sbjct: 85 ALREKAYPVVVED--FWEAWKAVQLKKIPVMGGT 116 >5XUM-A nrPDB Length = 169 Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 11/76 (14%) Query: 126 VGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIK 185 VGID+++ +PE F +R E + K +ALKE+F K Sbjct: 5 VGIDVLEVE-----RVPEKF--AERILGESEKRLFLTRKRRRE---FIAGRFALKEAFFK 54 Query: 186 AIGVGL-GFELQRLEF 200 A+G GL G +EF Sbjct: 55 ALGTGLNGHSFTDVEF 70 >1E6Y-A nrPDB Length = 569 Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 89 KGKPVLAKDSSNP-YPNFNFNISHQGDYAVLA 119 +G L + P YPN+ N+ HQG YA +A Sbjct: 480 QGDEGLPDELRGPNYPNYAMNVGHQGGYAGIA 511 >3DSH-A nrPDB Length = 246 Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 248 PDGSRHQDVPSQDDSKPTQRQFTILNF-NDLMSSAVPMTPEDPSFWDCFCFTEEIPIR 304 P S H P+ + + F++ +F N+L+ T P F FCF EE P R Sbjct: 118 PCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDR 175 >3HYK-A nrPDB Length = 122 Score = 27.3 bits (59), Expect = 8.4, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 126 VGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIK 185 +GIDI++ + + + M+R T E + K + +A KE++ K Sbjct: 8 IGIDIIELNRIEK-MLDGKLKFMERILTENERNVAKGLKGS-RLTEFVAGRFAAKEAYSK 65 Query: 186 AIGVGLGFELQRLEFDL 202 A+G G+G E+ L+ ++ Sbjct: 66 AVGTGIGKEVSFLDIEV 82 >3CP6-A nrPDB Length = 376 Score = 27.3 bits (59), Expect = 8.8, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 112 QGDYAVLAAEPEL--QVGIDIMKTSFPG------RGSIPEFFHIMKRKFTNKEWETIRSF 163 Q DY L +P + ++G DI + + PE + I+K + KE E + Sbjct: 265 QDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARV 324 Query: 164 KDEWTQLDM 172 K + +LD+ Sbjct: 325 KALYEELDL 333 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.316 0.133 0.398 Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,648,548 Number of Sequences: 36641 Number of extensions: 579228 Number of successful extensions: 1372 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 1343 Number of HSP's gapped (non-prelim): 56 length of query: 309 length of database: 10,336,785 effective HSP length: 97 effective length of query: 212 effective length of database: 6,782,608 effective search space: 1437912896 effective search space used: 1437912896 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.3 bits)