BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q9NRG4
(433 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4YND-A nrPDB 905 0.0
3QWV-A nrPDB 846 0.0
3N71-A nrPDB 236 2e-62
3OXG-A nrPDB 229 2e-60
3S8P-A nrPDB 37 0.021
3RQ4-A nrPDB 36 0.036
4AU7-A nrPDB 35 0.062
1EZW-A nrPDB 34 0.10
5CWW-B nrPDB 33 0.19
2DJ8-A nrPDB 33 0.25
2ODD-A nrPDB 30 1.8
3OJY-B nrPDB 30 2.0
4U1Y-A nrPDB 30 2.8
3QXY-A nrPDB 29 3.9
2OD1-A nrPDB 29 4.6
6FT6-5 nrPDB 28 5.2
5OWG-A nrPDB 28 6.4
2Q0O-A nrPDB 28 7.3
6AYG-A nrPDB 28 7.6
4IU6-A nrPDB 28 9.7
>4YND-A nrPDB
Length = 461
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/433 (100%), Positives = 433/433 (100%)
Query: 1 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE 60
MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE
Sbjct: 29 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE 88
Query: 61 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP 120
GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP
Sbjct: 89 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP 148
Query: 121 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN 180
ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN
Sbjct: 149 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN 208
Query: 181 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY 240
CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY
Sbjct: 209 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY 268
Query: 241 IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARN 300
IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARN
Sbjct: 269 IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARN 328
Query: 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL 360
VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL
Sbjct: 329 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL 388
Query: 361 QYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH 420
QYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH
Sbjct: 389 QYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH 448
Query: 421 PYISEIKQEIESH 433
PYISEIKQEIESH
Sbjct: 449 PYISEIKQEIESH 461
>3QWV-A nrPDB
Length = 433
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/433 (93%), Positives = 418/433 (96%)
Query: 1 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE 60
MRAE GGLERFCS GKGRGLRAL+PF VGDLLFSCPAYA VLTV ERG+HCE CF RKE
Sbjct: 1 MRAEARGGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKE 60
Query: 61 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP 120
GLSKCGRCKQAFYC+VECQKEDWP+HKLECS MVV GENWNPSETVRLTARILAKQKIHP
Sbjct: 61 GLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHP 120
Query: 121 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN 180
ERTPSEKLLAV+EFESHLDKLDNEKKDLIQSDIAALH FYSK+L FPD+ SLVVLFAQVN
Sbjct: 121 ERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVN 180
Query: 181 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY 240
CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEI PG+EVFTSY
Sbjct: 181 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSY 240
Query: 241 IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARN 300
IDLLYPTEDRNDRLRDSYFFTCEC+ECTTKDKDKAKVE+RKLS PP+AEAIRDMVRYARN
Sbjct: 241 IDLLYPTEDRNDRLRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARN 300
Query: 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL 360
VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL
Sbjct: 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL 360
Query: 361 QYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH 420
+YGQKIIKPYSKHYP+YSLNVASMWLKLGRLYMGLE+KAAGEKALKKAIAIMEVAHGKDH
Sbjct: 361 KYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420
Query: 421 PYISEIKQEIESH 433
PYISEIKQEIESH
Sbjct: 421 PYISEIKQEIESH 433
>3N71-A nrPDB
Length = 490
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 234/444 (52%), Gaps = 23/444 (5%)
Query: 1 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE 60
M + +E F S GKGRGL+A + F D++F+ AY+ V+ + C CF R+E
Sbjct: 1 MTIGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQE 60
Query: 61 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP 120
L +CG+CK A YC+ CQK+ W HK EC+ + +G+ P+E +RL ARI+ + +
Sbjct: 61 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKV--PNENIRLAARIMWRVEREG 118
Query: 121 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN 180
L++V + ++H++ E++ ++ D+ ++ + +F +N
Sbjct: 119 TGLTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVIN 178
Query: 181 CNGFTIEDEE-LSHLGSAIFPDVALMNHSCCPNVIVTYKG-------------TLAEVRA 226
CNGFT+ D+ L +G IFP++ L+NH C PN V + E+RA
Sbjct: 179 CNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRA 238
Query: 227 VQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDP- 285
+ +I GEE+ SYID L+ +E+R +L+ Y+F C C+ C KD + ++ DP
Sbjct: 239 LGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKE--DPK 296
Query: 286 PKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQ 345
P E +++M++++++ +E+ +A+ E++++C EK VF D+N+Y+L ++
Sbjct: 297 PSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSI 356
Query: 346 AMGVCLYMQDWEGALQYGQKIIKPYSK--HYPLYSLNVASMWLKLGRLYMGLEHKAAGEK 403
A V Y+Q +E A Y ++++ Y K H+ L +A M L + G H G
Sbjct: 357 ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG--HIEVGHG 414
Query: 404 ALKKAIAIMEVAHGKDHPYISEIK 427
+ KA AI+ V HG HP +++
Sbjct: 415 MICKAYAILLVTHGPSHPITKDLE 438
>3OXG-A nrPDB
Length = 464
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 219/416 (52%), Gaps = 17/416 (4%)
Query: 9 LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRC 68
+E+F + +G GLRA+ P + G+LLF AY + RG C+ C KE L +C +C
Sbjct: 42 VEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQC 101
Query: 69 KQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKL 128
+ A YC+ +CQK+ WP HK EC + + P ++VRL R++ K + + SEKL
Sbjct: 102 RVAKYCSAKCQKKAWPDHKRECKCLKSCKPRY-PPDSVRLLGRVVFKL-MDGAPSESEKL 159
Query: 129 LAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLG----FPDNDSLVVLFAQVNCNGF 184
+ + ES+++KL ++K+ ++ + HF + + P L FA+V CN F
Sbjct: 160 YSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSF 219
Query: 185 TIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLL 244
TI + E+ +G ++P ++L+NHSC PN + + G +RAV++I+ GEE+ Y+D+L
Sbjct: 220 TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDML 279
Query: 245 YPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEE 304
+E+R +LRD Y F C+C C T+DKD + E + V+ + IEE
Sbjct: 280 MTSEERRKQLRDQYCFECDCFRCQTQDKDADMLT--------GDEQVWKEVQESLKKIEE 331
Query: 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQ 364
+ H+K ++L +C+ S D N+Y L ++ AM C+ + E AL YG
Sbjct: 332 LK--AHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT 388
Query: 365 KIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH 420
+ ++PY +P +K+G+L + K L+ A IM V HG++H
Sbjct: 389 RTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 444
>3S8P-A nrPDB
Length = 273
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 31/143 (21%)
Query: 127 KLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHL-GFPDNDSLVVLFAQVNCNGFT 185
K++A KE++ N+K +L+ IA L L +ND V+ + NC
Sbjct: 149 KIVATKEWKR------NDKIELLVGCIAELSEIEENMLLRHGENDFSVMYSTRKNCAQLW 202
Query: 186 IEDEELSHLGSAIFPDVALMNHSCCPNV-IVTYKGTLAEVRAVQEIKPGEEVFTSYIDLL 244
LG A F +NH C PN V+ A V+A+++I+PGEE+ Y D
Sbjct: 203 --------LGPAAF-----INHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGF 249
Query: 245 YPTEDRNDRLRDSYFFTCECQEC 267
+ + CEC C
Sbjct: 250 FGENNE----------FCECYTC 262
>3RQ4-A nrPDB
Length = 247
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 202 VALMNHSCCPNV-IVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFF 260
A +NH C PN V G A V+ +++I+PG+EV Y + + ++ +
Sbjct: 177 AAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEH--------- 227
Query: 261 TCECQECTTKDKDKAKVEIRK 281
CEC C K + + R+
Sbjct: 228 -CECHTCERKGEGAFRTRPRE 247
>4AU7-A nrPDB
Length = 247
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 202 VALMNHSCCPNV-IVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFF 260
A +NH C PN V G A V+ +++I+PG+EV Y + + ++ +
Sbjct: 179 AAFINHDCKPNCKFVPSDGNTACVKVLRDIEPGDEVTCFYGEGFFGEKNEH--------- 229
Query: 261 TCECQECTTKDKDKAKVE 278
CEC C K + +++
Sbjct: 230 -CECYTCERKGEGAFRLQ 246
>1EZW-A nrPDB
Length = 349
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 344 YQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASM-WLKLGRLYMGLEHKAAGE 402
Y MGV ++ G I PY++H + + N+A++ W+ GR +G+ G+
Sbjct: 43 YSYMGVLTLAAVITSKIKLGPGITNPYTRHPLITASNIATLDWISGGRAIIGM---GPGD 99
Query: 403 KA 404
KA
Sbjct: 100 KA 101
>5CWW-B nrPDB
Length = 595
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 95 VFGENWNPSETV--RLTARILAK---QKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLI 149
+ + W P T+ L+A I+AK + +PE TP E+L+A ++ E + ++DN++ L+
Sbjct: 287 LLPQRWTPPPTLIPSLSASIVAKVAAAEDNPESTPEERLVAQQQLE-WMSEIDNQEPKLV 345
Query: 150 Q 150
+
Sbjct: 346 E 346
>2DJ8-A nrPDB
Length = 60
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 45 VNERGNHCEYCFT-RKEGLSKCGRCKQAFYCNVECQKEDWPMHKLECS 91
+N++ + E C+ ++ C C A YC CQ +DW H CS
Sbjct: 8 INQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICS 55
>2ODD-A nrPDB
Length = 64
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 48 RGNHCEYCFT-RKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
+G+ E C+ ++ C C A YC CQ +DW H C
Sbjct: 13 QGDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 56
>3OJY-B nrPDB
Length = 537
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 338 YMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVAS 383
++ + YQ + MQ+W A+QY IIK K PLY L A+
Sbjct: 380 HITTLAYQELPTADLMQEWGDAVQYNPAIIK--VKVEPLYELVTAT 423
>4U1Y-A nrPDB
Length = 819
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 157 HHFYSKHLGFPDNDSLVVLFAQVNCNGFTIED 188
+H+ +LGF D D L + F +GF I D
Sbjct: 209 YHYIIANLGFTDGDLLKIQFGGAEVSGFQIVD 240
>3QXY-A nrPDB
Length = 449
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDS 257
+ P ++NH N + Y + A Q I G E+F +Y + N +L
Sbjct: 219 MVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM------ANWQLIHM 272
Query: 258 YFFTCECQECTTKDKDKAKVEIRKLS-DPPKAEAIRDMV 295
Y F + T D V +R+ + K EA R +V
Sbjct: 273 YGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLV 311
>2OD1-A nrPDB
Length = 60
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 65 CGRCKQAFYCNVECQKEDWPMHKLEC 90
C C A YC CQ +DW H C
Sbjct: 27 CSGCNTARYCGSFCQHKDWEKHHHIC 52
>6FT6-5 nrPDB
Length = 120
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 95 VFGENWNPSET-VRLTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDI 153
V G+ W +T +R +R++ +K+ +K L K+F+ L L +EK++ Q+ I
Sbjct: 17 VSGKVWKAEKTPLRAKSRVVKNKKLTSWELKKQKRLEDKQFKERLKALKDEKEEARQAKI 76
Query: 154 AAL 156
L
Sbjct: 77 TML 79
>5OWG-A nrPDB
Length = 243
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 129 LAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKH-------------LGFPDNDSLVVL 175
+AV +++DK+ N + + +D+ ++YS+H LG P+ D + L
Sbjct: 168 MAVSNLNNYIDKIRNHEGEAEMADVIKAQNYYSEHQQKNPHTPRVMQSLGLPEED--IKL 225
Query: 176 FAQVNCNGFTIEDE 189
F N F E++
Sbjct: 226 FCSDNLFPFVSENQ 239
>2Q0O-A nrPDB
Length = 236
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 276 KVEIRKLSDPPKAEAIRDMVRYARNVI--EEFRRAKHYKSPSELLEICELSQEKMSSV 331
KV+I + DP KA + MV Y +I + K SP E+L + S+ K +SV
Sbjct: 138 KVDISGVLDPKKAVQLLMMVHYQLKIIAAKTVLNPKQMLSPREMLCLVWASKGKTASV 195
>6AYG-A nrPDB
Length = 558
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 144 EKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGFTIEDEELSHLGS 196
E K QS +A HFY + +P ND+ + ++ F +E +E H+G+
Sbjct: 152 ENKGTKQSAMAICQHFYKRGNIYPGNDTFDID-PEIETECFFVEPDEPFHIGT 203
>4IU6-A nrPDB
Length = 384
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 52 CEYCFTRKEGLSKCGRC-----KQAFYCNVECQKEDWPMHKL------------ECSPMV 94
CE E +C C + +++C+ EC K W HKL E S
Sbjct: 9 CETDGCSSEAKLQCPTCIKLGIQGSYFCSQECFKGSWATHKLLHKKAKDEKAKREVSSWT 68
Query: 95 VFGE-NWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESH 137
V G+ N +P R T ++ + P R P + ++ H
Sbjct: 69 VEGDINTDPWAGYRYTGKLRPHYPLMPTR-PVPSYIQRPDYADH 111
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4YND-A nrPDB 707 0.0
3QWV-A nrPDB 700 0.0
3N71-A nrPDB 605 e-173
3OXG-A nrPDB 582 e-167
Sequences not found previously or not previously below threshold:
3RQ4-A nrPDB 44 2e-04
4AU7-A nrPDB 43 2e-04
3S8P-A nrPDB 42 5e-04
3NF1-A nrPDB 40 0.002
2W5Y-A nrPDB 39 0.004
5OJ8-A nrPDB 39 0.004
6FUZ-A nrPDB 38 0.006
6FDU-A nrPDB 35 0.045
5F59-A nrPDB 35 0.084
2DJ8-A nrPDB 34 0.13
2R3A-A nrPDB 34 0.14
4NVQ-A nrPDB 34 0.14
1N3J-A nrPDB 33 0.20
2ODD-A nrPDB 33 0.21
5LSU-A nrPDB 33 0.25
2OD1-A nrPDB 33 0.28
1PEG-A nrPDB 32 0.42
5OWG-A nrPDB 32 0.49
3OOI-A nrPDB 32 0.51
3B2D-A nrPDB 32 0.52
5V2N-A nrPDB 32 0.55
6AGO-A nrPDB 32 0.60
4YPU-A nrPDB 32 0.61
5HQ2-M nrPDB 32 0.67
1IT8-A nrPDB 31 0.80
6A5K-A nrPDB 31 0.86
6CEN-A nrPDB 31 1.1
4QEP-A nrPDB 30 1.6
2OOE-A nrPDB 30 1.8
2OND-A nrPDB 30 1.8
5AYF-A nrPDB 30 2.3
1MUF-A nrPDB 30 2.3
5OJF-A nrPDB 30 2.5
3K2S-A nrPDB 29 4.0
3BO5-A nrPDB 29 4.2
3R2P-A nrPDB 29 4.3
5TH7-A nrPDB 29 4.5
3QXY-A nrPDB 29 5.0
1AV1-A nrPDB 29 5.8
2Z7X-B nrPDB 29 6.1
6BOX-A nrPDB 29 6.3
2C2V-S nrPDB 28 6.6
4Z5Q-A nrPDB 28 6.7
3DXY-A nrPDB 28 7.1
2EH3-A nrPDB 28 7.3
1QVR-A nrPDB 28 8.4
6CLZ-B nrPDB 28 8.6
3ZYY-X nrPDB 28 9.2
2F42-A nrPDB 28 9.2
>4YND-A nrPDB
Length = 461
Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats.
Identities = 433/433 (100%), Positives = 433/433 (100%)
Query: 1 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE 60
MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE
Sbjct: 29 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE 88
Query: 61 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP 120
GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP
Sbjct: 89 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP 148
Query: 121 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN 180
ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN
Sbjct: 149 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN 208
Query: 181 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY 240
CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY
Sbjct: 209 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY 268
Query: 241 IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARN 300
IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARN
Sbjct: 269 IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARN 328
Query: 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL 360
VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL
Sbjct: 329 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL 388
Query: 361 QYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH 420
QYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH
Sbjct: 389 QYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH 448
Query: 421 PYISEIKQEIESH 433
PYISEIKQEIESH
Sbjct: 449 PYISEIKQEIESH 461
>3QWV-A nrPDB
Length = 433
Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats.
Identities = 404/433 (93%), Positives = 418/433 (96%)
Query: 1 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE 60
MRAE GGLERFCS GKGRGLRAL+PF VGDLLFSCPAYA VLTV ERG+HCE CF RKE
Sbjct: 1 MRAEARGGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKE 60
Query: 61 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP 120
GLSKCGRCKQAFYC+VECQKEDWP+HKLECS MVV GENWNPSETVRLTARILAKQKIHP
Sbjct: 61 GLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHP 120
Query: 121 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN 180
ERTPSEKLLAV+EFESHLDKLDNEKKDLIQSDIAALH FYSK+L FPD+ SLVVLFAQVN
Sbjct: 121 ERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVN 180
Query: 181 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY 240
CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEI PG+EVFTSY
Sbjct: 181 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSY 240
Query: 241 IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARN 300
IDLLYPTEDRNDRLRDSYFFTCEC+ECTTKDKDKAKVE+RKLS PP+AEAIRDMVRYARN
Sbjct: 241 IDLLYPTEDRNDRLRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARN 300
Query: 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL 360
VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL
Sbjct: 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL 360
Query: 361 QYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH 420
+YGQKIIKPYSKHYP+YSLNVASMWLKLGRLYMGLE+KAAGEKALKKAIAIMEVAHGKDH
Sbjct: 361 KYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420
Query: 421 PYISEIKQEIESH 433
PYISEIKQEIESH
Sbjct: 421 PYISEIKQEIESH 433
>3N71-A nrPDB
Length = 490
Score = 605 bits (1560), Expect = e-173, Method: Composition-based stats.
Identities = 134/443 (30%), Positives = 232/443 (52%), Gaps = 21/443 (4%)
Query: 1 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE 60
M + +E F S GKGRGL+A + F D++F+ AY+ V+ + C CF R+E
Sbjct: 1 MTIGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQE 60
Query: 61 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP 120
L +CG+CK A YC+ CQK+ W HK EC+ + +G+ P+E +RL ARI+ + +
Sbjct: 61 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKV--PNENIRLAARIMWRVEREG 118
Query: 121 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVN 180
L++V + ++H++ E++ ++ D+ ++ + +F +N
Sbjct: 119 TGLTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVIN 178
Query: 181 CNGFTIEDEE-LSHLGSAIFPDVALMNHSCCPNVIVTYKG-------------TLAEVRA 226
CNGFT+ D+ L +G IFP++ L+NH C PN V + E+RA
Sbjct: 179 CNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRA 238
Query: 227 VQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPP 286
+ +I GEE+ SYID L+ +E+R +L+ Y+F C C+ C KD + ++ P
Sbjct: 239 LGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKEDPKP- 297
Query: 287 KAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQA 346
E +++M++++++ +E+ +A+ E++++C EK VF D+N+Y+L ++ A
Sbjct: 298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIA 357
Query: 347 MGVCLYMQDWEGALQYGQKIIKPYSK--HYPLYSLNVASMWLKLGRLYMGLEHKAAGEKA 404
V Y+Q +E A Y ++++ Y K H+ L +A M L + G H G
Sbjct: 358 SEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG--HIEVGHGM 415
Query: 405 LKKAIAIMEVAHGKDHPYISEIK 427
+ KA AI+ V HG HP +++
Sbjct: 416 ICKAYAILLVTHGPSHPITKDLE 438
>3OXG-A nrPDB
Length = 464
Score = 582 bits (1501), Expect = e-167, Method: Composition-based stats.
Identities = 134/416 (32%), Positives = 219/416 (52%), Gaps = 17/416 (4%)
Query: 9 LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRC 68
+E+F + +G GLRA+ P + G+LLF AY + RG C+ C KE L +C +C
Sbjct: 42 VEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQC 101
Query: 69 KQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKL 128
+ A YC+ +CQK+ WP HK EC + + P ++VRL R++ K + + SEKL
Sbjct: 102 RVAKYCSAKCQKKAWPDHKRECKCLKSCKPRY-PPDSVRLLGRVVFKL-MDGAPSESEKL 159
Query: 129 LAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLG----FPDNDSLVVLFAQVNCNGF 184
+ + ES+++KL ++K+ ++ + HF + + P L FA+V CN F
Sbjct: 160 YSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSF 219
Query: 185 TIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLL 244
TI + E+ +G ++P ++L+NHSC PN + + G +RAV++I+ GEE+ Y+D+L
Sbjct: 220 TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDML 279
Query: 245 YPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEE 304
+E+R +LRD Y F C+C C T+DKD + E + V+ + IEE
Sbjct: 280 MTSEERRKQLRDQYCFECDCFRCQTQDKDADMLT--------GDEQVWKEVQESLKKIEE 331
Query: 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQ 364
+ H+K ++L +C+ S D N+Y L ++ AM C+ + E AL YG
Sbjct: 332 LK--AHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT 388
Query: 365 KIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH 420
+ ++PY +P +K+G+L + K L+ A IM V HG++H
Sbjct: 389 RTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 444
>3RQ4-A nrPDB
Length = 247
Score = 43.6 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 203 ALMNHSCCPNVIVT-YKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
A +NH C PN G A V+ +++I+PG+EV Y + + ++N+
Sbjct: 178 AFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFF--GEKNEH-------- 227
Query: 262 CECQECTTKDKDKAKVEIRK 281
CEC C K + + R+
Sbjct: 228 CECHTCERKGEGAFRTRPRE 247
>4AU7-A nrPDB
Length = 247
Score = 43.2 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 203 ALMNHSCCPNVIVT-YKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
A +NH C PN G A V+ +++I+PG+EV Y + + ++N+
Sbjct: 180 AFINHDCKPNCKFVPSDGNTACVKVLRDIEPGDEVTCFYGEGFF--GEKNEH-------- 229
Query: 262 CECQECTTKDKDKAKVE 278
CEC C K + +++
Sbjct: 230 CECYTCERKGEGAFRLQ 246
>3S8P-A nrPDB
Length = 273
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 203 ALMNHSCCPNVIVTYKGT-LAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
A +NH C PN G A V+A+++I+PGEE+ Y D + +
Sbjct: 207 AFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNE----------F 256
Query: 262 CECQECTTK 270
CEC C +
Sbjct: 257 CECYTCERR 265
>3NF1-A nrPDB
Length = 311
Score = 40.5 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYS 371
E +C+ + E V + + + +C +E Y Q+ ++ Y
Sbjct: 125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184
Query: 372 KHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
NVA L Y+ E K I+ AH ++ + + + I
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK---EILTRAHEREFGSVDDENKPIW 241
Query: 432 SH 433
H
Sbjct: 242 MH 243
Score = 30.9 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 35/113 (30%)
Query: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIK 368
+ +C+ + E + + + M+ V ++ A +
Sbjct: 38 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97
Query: 369 PYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHP 421
K VA+ L LY E K+A+ I E GKDHP
Sbjct: 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150
Score = 30.1 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413
+E A+ ++ ++ K +VA+M L +Y L A+AI E
Sbjct: 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100
Query: 414 VAHGKDHPYIS 424
GKDHP ++
Sbjct: 101 KTLGKDHPAVA 111
>2W5Y-A nrPDB
Length = 192
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 179 VNCNGFTIEDEELSHLGSAIFPDVA-LMNHSCCPNV---IVTYKGT-LAEVRAVQEIKPG 233
+ C F I+D E+ + + + + A +NHSC PN ++ G + A+++I G
Sbjct: 103 IGCYMFRIDDSEV--VDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRG 160
Query: 234 EEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTT 269
EE+ D +P ED +++L C ++C
Sbjct: 161 EELT---YDYKFPIEDASNKLP----CNCGAKKCRK 189
>5OJ8-A nrPDB
Length = 255
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 3/108 (2%)
Query: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYS 371
E +C+ + E V + + + +C +E Y Q+ ++ Y
Sbjct: 148 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 207
Query: 372 KHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKD 419
NVA L Y+ E K I+ AH ++
Sbjct: 208 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK---EILTRAHERE 252
Score = 30.9 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 35/113 (30%)
Query: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIK 368
+ +C+ + E + + + M+ V ++ A +
Sbjct: 61 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 120
Query: 369 PYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHP 421
K VA+ L LY E K+A+ I E GKDHP
Sbjct: 121 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 173
Score = 30.5 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413
+E A+ ++ ++ K +VA+M L +Y L A+AI E
Sbjct: 64 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 123
Query: 414 VAHGKDHPYIS 424
GKDHP ++
Sbjct: 124 KTLGKDHPAVA 134
>6FUZ-A nrPDB
Length = 337
Score = 38.2 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 3/122 (2%)
Query: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYS 371
E +C+ + E V + + + +C +E Y Q+ + Y
Sbjct: 111 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALGIYQ 170
Query: 372 KHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
NVA L Y+ E K I+ AH ++ + + + I
Sbjct: 171 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK---EILTRAHEREFGSVDDENKPIW 227
Query: 432 SH 433
H
Sbjct: 228 MH 229
Score = 30.5 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 35/113 (30%)
Query: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIK 368
+ +C+ + E + + + M+ V ++ A +
Sbjct: 24 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 83
Query: 369 PYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHP 421
K VA+ L LY E K+A+ I E GKDHP
Sbjct: 84 IREKTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 136
Score = 30.1 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%)
Query: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413
+E A+ ++ ++ K +VA+M L +Y L A+AI E
Sbjct: 27 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 86
Query: 414 VAHGKDHPYIS 424
G+DHP ++
Sbjct: 87 KTLGRDHPAVA 97
>6FDU-A nrPDB
Length = 266
Score = 35.5 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 21/177 (11%)
Query: 8 GLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNER---GNHCEYCFTRKEGLSK 64
GLE + + + AL P D++F C Y + L F K+ +
Sbjct: 11 GLEVLFQGPRRQTIEALVPAWDSDIIFKCLCYFHTLYPGLIPLETFPPATIFNFKQKIIS 70
Query: 65 CGRCKQAFY--------CNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQ 116
K+A + C KE++ H + + VF +T+ T + + +
Sbjct: 71 ILEDKKAVLRGEPIKGPLPICCSKENYRRHLQRTTLLPVFMWYHPTPKTLSDTMQTMKQL 130
Query: 117 KIHPERTPSEKLLAVKEFES----HLDKL------DNEKKDLIQSDIAALHHFYSKH 163
I S LL + + ++ + D L K +QS L Y +
Sbjct: 131 AIKGSVGASHWLLVIVDIQARRLVYFDSLYNYVMPPENMKKELQSFAQQLDQVYPAY 187
>5F59-A nrPDB
Length = 154
Score = 34.7 bits (78), Expect = 0.084, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 205 MNHSCCPNV---IVTY-KGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFF 260
+NHSC PN +VT+ +G + + + I+ GEE+ Y D + ED D +
Sbjct: 91 INHSCAPNCVAEVVTFERGHKIIISSSRRIQKGEEL--CY-DYKFDFED------DQHKI 141
Query: 261 TCEC 264
C C
Sbjct: 142 PCHC 145
>2DJ8-A nrPDB
Length = 60
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLECS 91
C C ++ C C A YC CQ +DW H CS
Sbjct: 18 CWNC--GRKASETCSGCNTARYCGSFCQHKDWEKHHHICS 55
>2R3A-A nrPDB
Length = 300
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 20/87 (22%)
Query: 165 GFPDNDSLVVLFAQ-VNCNGFTIEDEELSHLGSAIFPDVA-LMNHSCCPNVIVTYKG--- 219
F DN + LF + FT++ + +V+ +NHSC PN+ V +
Sbjct: 185 QFYDNKGITYLFDLDYESDEFTVDAAR--------YGNVSHFVNHSCDPNLQV-FNVFID 235
Query: 220 ------TLAEVRAVQEIKPGEEVFTSY 240
+ + + I GEE+ Y
Sbjct: 236 NLDTRLPRIALFSTRTINAGEELTFDY 262
>4NVQ-A nrPDB
Length = 285
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 188 DEELSHLGSAIFPDVA-LMNHSCCPNVIVT--------YKGTLAEVRAVQEIKPGEEVFT 238
D E+ + + + +++ +NH C PN+I + + ++I+ GEE+
Sbjct: 185 DGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGF 244
Query: 239 SYIDLLYPTEDRNDRLRDSYFFTCEC--QECT 268
Y D + + + +FTC+C ++C
Sbjct: 245 DYGDRFWDIKSK--------YFTCQCGSEKCK 268
>1N3J-A nrPDB
Length = 119
Score = 33.2 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 184 FTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVR--AVQEIKPGEEVFTSYI 241
F+ ++ LG A+ NHS PN L +R ++ I GEE+ SY
Sbjct: 52 FSRKNMSAMALGFG-----AIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYG 106
Query: 242 DLLYPTEDRNDR 253
D + + R +
Sbjct: 107 DDYWLSRPRLTQ 118
>2ODD-A nrPDB
Length = 64
Score = 33.2 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 44 TVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
+ C C ++ C C A YC CQ +DW H C
Sbjct: 12 FQGDSSESCWNC--GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 56
>5LSU-A nrPDB
Length = 252
Score = 33.2 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 204 LMNHSCCPNVIV---TYKG-TLAEVRAVQEIKPGEEVFTSY 240
MNHSC PN T G T + AV +I G E+ +Y
Sbjct: 188 FMNHSCQPNCETLKWTVNGDTRVGLFAVCDIPAGTELTFNY 228
>2OD1-A nrPDB
Length = 60
Score = 32.8 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
C C ++ C C A YC CQ +DW H C
Sbjct: 16 CWNC--GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 52
>1PEG-A nrPDB
Length = 302
Score = 32.4 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 204 LMNHSCCPNVIVTYK-GTLAE-------VRAVQEIKPGEEVFTSYIDLLYPTE-DRNDRL 254
+NHSC PN+ + + G A+ + A+++I G E+ Y++ L E D +D
Sbjct: 223 FINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPS 282
Query: 255 RDSYFFTCEC 264
+ S C C
Sbjct: 283 KISEMTKCLC 292
>5OWG-A nrPDB
Length = 243
Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 80 KEDWPMHK---LECSPMVVFGENWNP--SETVRLTARILAKQKIHPERTPSEKLLAVKEF 134
++D P+ K E E P ++ + I A + +AV
Sbjct: 114 QKDHPLTKWFIEENKWFKPSKERELPEWAKAIFSGGMIAAGNVREEDELNKICTMAVSNL 173
Query: 135 ESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDN 169
+++DK+ N + + +D+ ++YS+H +
Sbjct: 174 NNYIDKIRNHEGEAEMADVIKAQNYYSEHQQKNPH 208
>3OOI-A nrPDB
Length = 232
Score = 32.0 bits (71), Expect = 0.51, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 204 LMNHSCCPNVIV----TYKGTLAEVRAVQEIKPGEEVFTSY 240
MNH C PN T + A+ +IK G E+ +Y
Sbjct: 168 FMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNY 208
>3B2D-A nrPDB
Length = 603
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 87/242 (35%), Gaps = 24/242 (9%)
Query: 126 EKLLAVKEFESHLDKLDNEKKDLIQSD-IAALHHFYSKHLGFPDNDSLVVLFA-QVNCNG 183
E L ++ +H+ + K ++ + + ++ D SL +N NG
Sbjct: 126 ENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNG 185
Query: 184 FTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTL------AEVRAVQEIKPGEEVF 237
++ EL S IF +N PN+ V + G + ++I E++
Sbjct: 186 NNVKGIELGAFDSTIFQS---LNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDD-EDIS 241
Query: 238 TSYIDLLYPTEDRNDRLRDSYFFTCE--CQECTTKDKDKAKVEIRKLSDPPKAEAIRDMV 295
++ + L + L++ F +C T+ ++ P +
Sbjct: 242 SAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMK------ 295
Query: 296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD 355
N++++ + ++ +L +I + ++ ++ NV LH+ + +Q
Sbjct: 296 --GLNLLKKLVLSVNH--FDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQT 351
Query: 356 WE 357
+
Sbjct: 352 LD 353
>5V2N-A nrPDB
Length = 165
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 204 LMNHSCCPNVIVTYKG----TLAEVRAVQEIKPGEEVFTSYID 242
L+NHS C N + A ++I GEE+ Y D
Sbjct: 109 LINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 151
>6AGO-A nrPDB
Length = 256
Score = 31.6 bits (70), Expect = 0.60, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 204 LMNHSCCPNVIV---TYKGT-LAEVRAVQEIKPGEEVFTSY 240
+NHSC PN + + G + A++++ G E+ Y
Sbjct: 183 FINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDY 223
Score = 30.5 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 2 RAEGLGGLERFCSPGKGRGLRALQPFQVGDLLF-------SCPAYAYVLTVNERGNHCEY 54
R E + LERF + KG G+R +P + G + S + + + Y
Sbjct: 103 RHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHY 162
Query: 55 CFTRKEGL----SKCG-RCKQA-FYCNVECQKEDW 83
C G+ + G + C+ C+ + W
Sbjct: 163 CLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKW 197
>4YPU-A nrPDB
Length = 226
Score = 31.6 bits (70), Expect = 0.61, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 204 LMNHSCCPNVIV---TYKGT-LAEVRAVQEIKPGEEVFTSY 240
+NHSC PN + + G + A++++ G E+ Y
Sbjct: 153 FINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDY 193
Score = 30.1 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 2 RAEGLGGLERFCSPGKGRGLRALQPFQVGDLLF-------SCPAYAYVLTVNERGNHCEY 54
R E + LERF + KG G+R +P + G + S + + + Y
Sbjct: 73 RHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHY 132
Query: 55 CFTRKEGL----SKCG-RCKQA-FYCNVECQKEDW 83
C G+ + G + C+ C+ + W
Sbjct: 133 CLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKW 167
>5HQ2-M nrPDB
Length = 202
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 204 LMNHSCCPNVIVTYKG----TLAEVRAVQEIKPGEEVFTSYID 242
L+NHS C N + A ++I GEE+ Y D
Sbjct: 146 LINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 188
>1IT8-A nrPDB
Length = 582
Score = 31.2 bits (69), Expect = 0.80, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 242 DLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNV 301
D Y T + RL + +F C C C+ K ++L + PK E R + + V
Sbjct: 259 DDRYMTPEGTKRLDELDYFPCSCPVCS-------KYTPQELREMPKEERTRLLALHNLWV 311
Query: 302 I-EEFRRAKHYKSPSELLEICEL 323
I EE +R K EL + +
Sbjct: 312 IKEEIKRVKQAIKEGELWRLVDE 334
>6A5K-A nrPDB
Length = 527
Score = 31.2 bits (69), Expect = 0.86, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 182 NGFTIEDEELSHLGSAIFPDVALMNHSCCPNV---IVTYKG-----TLAEVRAVQEIKPG 233
+GFTI+ ++G +NHSC PN+ V Y A I P
Sbjct: 437 SGFTIDAASKGNVG-------RFINHSCSPNLYAQNVLYDHEDSRIPHVMFFAQDNIPPL 489
Query: 234 EEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD 271
+E+ Y L D ++ F C C +
Sbjct: 490 QELCYDYNYALDQVRDSKGNIKQKLCF-CGAAVCRRRL 526
>6CEN-A nrPDB
Length = 228
Score = 30.9 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 204 LMNHSCCPNVIV---TYKG-TLAEVRAVQEIKPGEEVFTSY 240
MNHSC PN T G + A+ +I G E+ +Y
Sbjct: 164 FMNHSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNY 204
>4QEP-A nrPDB
Length = 533
Score = 30.5 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 204 LMNHSCCPNVIVT--------YKGTLAEVRAVQEIKPGEEVFTSY---IDLLYPTEDRND 252
+NHSC PN+ V + + A I P +E+ Y +D ++ + +
Sbjct: 458 FINHSCEPNLFVQCVLSSHQDIRLARVVLFAADNISPMQELTYDYGYALDSVHGPDGKVK 517
Query: 253 RLRDSYFFTCECQE 266
+L Y C++
Sbjct: 518 QLA-CYCGALNCRK 530
>2OOE-A nrPDB
Length = 530
Score = 30.1 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLL-Y 245
ED H ++ ALM + C + V +K ++ +I E +YID L +
Sbjct: 384 EDARTRH---HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSH 437
Query: 246 PTEDRNDRL 254
ED N R+
Sbjct: 438 LNEDNNTRV 446
>2OND-A nrPDB
Length = 308
Score = 30.1 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLL-Y 245
ED H ++ ALM + C + V +K ++ +I E +YID L +
Sbjct: 162 EDARTRH---HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSH 215
Query: 246 PTEDRNDRL 254
ED N R+
Sbjct: 216 LNEDNNTRV 224
>5AYF-A nrPDB
Length = 263
Score = 29.7 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 206 NHSCCPNVIVTYK-----GTLAEVRAVQEIKPGEEVFTSY 240
NHS PN I G + +R ++ ++ EE+ +Y
Sbjct: 193 NHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY 232
>1MUF-A nrPDB
Length = 257
Score = 29.7 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 206 NHSCCPNVIVTYK-----GTLAEVRAVQEIKPGEEVFTSY 240
NHS PN I G + +R ++ ++ EE+ +Y
Sbjct: 216 NHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY 255
>5OJF-A nrPDB
Length = 314
Score = 29.7 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413
+E A+ ++ ++ K +VA+M L +Y L A+AI E
Sbjct: 42 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIRE 101
Query: 414 VAHGKDHPYIS 424
GKDHP ++
Sbjct: 102 KTLGKDHPAVA 112
>3K2S-A nrPDB
Length = 243
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 113 LAKQKIHPERTP--SEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHL 164
L +QK+ P R + E + L L E +D ++ + AL + +
Sbjct: 114 LYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYS 167
>3BO5-A nrPDB
Length = 290
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 204 LMNHSCCPNVIVT-----YKGTLAEVRAVQEIKPGEEVFTS----YIDL-LYPTEDRND- 252
+NHSC PN+++ + A ++I P EE+ Y++L + +++R D
Sbjct: 208 FLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDH 267
Query: 253 -RLRDSYFFTCECQECT 268
+LR + C + CT
Sbjct: 268 GKLRKPCY--CGAKSCT 282
>3R2P-A nrPDB
Length = 185
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 113 LAKQKIHPERTP--SEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHL 164
L +QK+ P R + E + L L E +D ++ + AL + +
Sbjct: 115 LYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYS 168
>5TH7-A nrPDB
Length = 148
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 204 LMNHSCCPNVIVTYKG----TLAEVRAVQEIKPGEEVFTSYID 242
L+NHS N + A ++I GEE+ Y D
Sbjct: 105 LINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 147
>3QXY-A nrPDB
Length = 449
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDS 257
+ P ++NH N + Y + A Q I G E+F +Y + N +L
Sbjct: 219 MVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM------ANWQLIHM 272
Query: 258 YFFTCECQECTTKDKDKAKVEIRKLS-DPPKAEAIRDMVRYARNVIEEFRRAKHYKSP 314
Y F + T D V +R+ + K EA R +V + + + +
Sbjct: 273 YGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAF 330
>1AV1-A nrPDB
Length = 201
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 113 LAKQKIHPERTP--SEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHL 164
L +QK+ P R + E + L L E +D ++ + AL + +
Sbjct: 72 LYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYS 125
>2Z7X-B nrPDB
Length = 520
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 155 ALHHFYSKHLGFPDNDSLVVLFAQVNCNGFTIEDEELSHL--GSAIFPDV------ALMN 206
++H S GFP + +F+ +N FT+ + H+ S I P + L+
Sbjct: 279 SIHQVVSDVFGFP-QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 207 HSCCPNV--IVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263
+ N + + + ++ ++E+ E+ T L +N D C
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396
>6BOX-A nrPDB
Length = 303
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 23/84 (27%)
Query: 199 FPDVA-LMNHSCCPNVIVTYKGTL---------AEVRAVQEIKPGEEVFTSY-------- 240
+ DV+ NHSC PN I Y A+++I+P EE+ Y
Sbjct: 214 YGDVSRFFNHSCSPN-IAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSP 272
Query: 241 IDLLYPTEDRNDRLRDSYFFTCEC 264
+ ++R +LR C+C
Sbjct: 273 VQSQKSQQNRISKLRRQ----CKC 292
>2C2V-S nrPDB
Length = 78
Score = 28.2 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 108 LTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDN 143
L +I + P TPS K+ E HL ++ +
Sbjct: 6 LCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH 41
>4Z5Q-A nrPDB
Length = 423
Score = 28.2 bits (61), Expect = 6.7, Method: Composition-based stats.
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 120 PERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAA 155
E T E + + + + + + L E++ + D+ +
Sbjct: 201 GELTDEECVQSFMDLQKYFEDLVKERRAEPRDDLTS 236
>3DXY-A nrPDB
Length = 218
Score = 28.2 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKII 367
+ H + S L +C + E + + D+++ M+ + + W A ++I+
Sbjct: 77 SAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF--------FPDPWHKARHNKRRIV 128
Query: 368 KPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAI 411
+ P L + + L G +M + + E L+ +I
Sbjct: 129 Q-----VPFAELVKSKLQLG-GVFHMATDWEPYAEHMLEVMSSI 166
>2EH3-A nrPDB
Length = 179
Score = 28.2 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 287 KAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQA 346
K E I +++ I K+P ELLE+ + V +++ ++
Sbjct: 46 KEELITEIIERTHKKIISLFEENKEKTPEELLEMFLEVLYREKKV---VYIFLFDLLCSE 102
Query: 347 MGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGR 390
+Y + E A + +K ++ KH+P + ++ + L R
Sbjct: 103 KFRNIYFEKIEDAKRRFEKFLE---KHFPSKAEILSEIILGFLR 143
>1QVR-A nrPDB
Length = 854
Score = 28.2 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 278 EIRKLSDPPKAEAIRDMVRYARNVIEEFRRAK-HYKSPSELLEICELSQEKMSSVFEDSN 336
++K DP E ++ + + EE + + ++ E+L +Q ++ V +
Sbjct: 419 ALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE 478
Query: 337 V 337
+
Sbjct: 479 L 479
>6CLZ-B nrPDB
Length = 211
Score = 27.8 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 113 LAKQKIHPERTP--SEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHL 164
L +QK+ P R + E + L L E +D ++ + AL + +
Sbjct: 82 LYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYS 135
>3ZYY-X nrPDB
Length = 631
Score = 27.8 bits (60), Expect = 9.2, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 94 VVFGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDI 153
V EN N E + L I K T + L+ V + + ++ K++ I
Sbjct: 15 VAISENTNLMEALNLAG-INIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGY 73
Query: 154 AALHHFYSK 162
Y +
Sbjct: 74 VLACQTYPE 82
>2F42-A nrPDB
Length = 179
Score = 27.8 bits (60), Expect = 9.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 108 LTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDN 143
L +I + P TPS K+ E HL ++ +
Sbjct: 107 LCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH 142
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.312 0.129 0.356
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,010,848
Number of Sequences: 36641
Number of extensions: 606966
Number of successful extensions: 1845
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1781
Number of HSP's gapped (non-prelim): 98
length of query: 433
length of database: 10,336,785
effective HSP length: 100
effective length of query: 333
effective length of database: 6,672,685
effective search space: 2222004105
effective search space used: 2222004105
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 60 (27.7 bits)