BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q9LY23 (286 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4FRF-A nrPDB 563 e-161 5W2G-A nrPDB 93 2e-19 6E7F-A nrPDB 84 9e-17 4O4C-A nrPDB 60 1e-09 2IF8-A nrPDB 48 5e-06 2A98-A nrPDB 44 7e-05 2AQX-A nrPDB 40 0.001 1W2F-A nrPDB 37 0.008 3HJ6-A nrPDB 31 0.73 4WNR-A nrPDB 30 1.6 3JCP-I nrPDB 29 2.1 6FVU-I nrPDB 28 3.1 1ZFJ-A nrPDB 28 4.4 3S2F-A nrPDB 28 5.1 6CGV-M nrPDB 27 8.0 3N2O-A nrPDB 27 9.8 3RBM-A nrPDB 27 10.0 >4FRF-A nrPDB Length = 275 Score = 563 bits (1451), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/275 (98%), Positives = 272/275 (98%) Query: 12 GHIAKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQ 71 G KDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQ Sbjct: 1 GSHMKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQ 60 Query: 72 AVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSG 131 AVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSG Sbjct: 61 AVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSG 120 Query: 132 FRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSV 191 FRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSV Sbjct: 121 FRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSV 180 Query: 192 YGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFAHV 251 YGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFAHV Sbjct: 181 YGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFAHV 240 Query: 252 LDGNGVIDHNFLGGLCSFINFIREILQSPDESADS 286 LDGNGVIDHNFLGGLCSFINFIREILQSPDESADS Sbjct: 241 LDGNGVIDHNFLGGLCSFINFIREILQSPDESADS 275 >5W2G-A nrPDB Length = 257 Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 26/273 (9%) Query: 8 HQVAGHIAKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNT---EVPEHIHRYF 64 HQVAGH+ GK L G K LQ RG E++FY + V + +Y Sbjct: 6 HQVAGHMY--GKI--LQHPDGTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYL 61 Query: 65 PVYHGTQAVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTG 124 P Y+G + + + LE++ ++ KP +MDVK+G +++ P AS E IQ+ + K Sbjct: 62 PKYYGIWSPPTAPNDLYLKLEDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQQQVSKYPL 121 Query: 125 TTTVSSGFRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPD 184 + GF + G VY S+ + R L + T++ VS + + D Sbjct: 122 MEEI--GFLVLGMRVYHVHSDSYETENQHYGRSL----TKETIKDGVSRFFHNGYCLRKD 175 Query: 185 SAFASSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVK 244 + AS + ++ ++ WFENQ +F + S+L VYE S + +V+ Sbjct: 176 AVAAS---------IQKIEKILQWFENQKQLNFYASSLLFVYEGSSQGGSGGE---VEVR 223 Query: 245 LVDFAHVLDGNGVIDHNFLGGLCSFINFIREIL 277 ++DFAHV N ID ++ GL I+ +R IL Sbjct: 224 MIDFAHVFPSN-TIDEGYVYGLKHLISVLRSIL 255 >6E7F-A nrPDB Length = 278 Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 122/276 (44%), Gaps = 42/276 (15%) Query: 28 GRFFKPLQGDSRGEIEVKFYESFSSNT---EVPEHIHRYFPVYHGTQAVEGSDGAAMMVL 84 G K LQ RG E++FY + V + +Y P Y+G + + + L Sbjct: 17 GTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYLPKYYGIWSPPTAPNDLYLKL 76 Query: 85 ENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGFRISGFEVYDHKE 144 E++ ++ KP +MDVK+G +++ P AS E IQ+ + K + GF + G VY Sbjct: 77 EDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQQQVSKYPLMEEI--GFLVLGMRVYHVHS 134 Query: 145 SSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSVYGGSHGILTQLLE 204 S+ + R L + T++ VS + + D+ AS + ++ + Sbjct: 135 DSYETENQHYGRSL----TKETIKDGVSRFFHNGYCLRKDAVAAS---------IQKIEK 181 Query: 205 LKTWFENQTLYHFNSCSILMVYENES---ILKGND--------------------DDARP 241 + WFENQ +F + S+L VYE S K ND + A Sbjct: 182 ILQWFENQKQLNFYASSLLFVYEGSSQPTTTKLNDRTLAEKFLSGGGGSGGGGSQEIAEV 241 Query: 242 QVKLVDFAHVLDGNGVIDHNFLGGLCSFINFIREIL 277 +V+++DFAHV N ID ++ GL I+ +R IL Sbjct: 242 EVRMIDFAHVFPSN-TIDEGYVYGLKHLISVLRSIL 276 >4O4C-A nrPDB Length = 255 Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 21/216 (9%) Query: 65 PVYHGTQAVEGSDGAAMMV-LENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDT 123 P ++G + E G + +ENL+ +Y +P V+D+K+G++TW P+ + ++K L D+ Sbjct: 50 PKFYGVELHEFGFGELEFIRMENLMYKYKRPFVLDLKIGTQTWDPETASSKMKKRLVVDS 109 Query: 124 GTTTVSSGFRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKP 183 +TT S G R SG E +E + L +V+ R +L++++ + G K Sbjct: 110 TSTTTSLGVRFSGMERNIGEEKPILYS--RYLCTHEVN-TRDSLKEYI--KLFFNDGKKY 164 Query: 184 DSAFASSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQV 243 L +++E+ E Y S S+L VY++ + L +D + Sbjct: 165 RKELVPYFISQ----LDKMIEVMKKRE----YKMFSSSVLFVYDSTTTL----EDKKYNC 212 Query: 244 KLVDFAH---VLDGNGVIDHNFLGGLCSFINFIREI 276 K++DFAH + + ++ FL GL + + + +I Sbjct: 213 KMIDFAHNWILSEEECTVEDGFLFGLNNLKSILEDI 248 >2IF8-A nrPDB Length = 363 Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 41/171 (23%) Query: 4 KVPEHQVAGHIAKDGKPGPLVDDKGRF-FKPL---QGDSRGEIEVKFYESFSSNTEVPEH 59 +V EH+ AGH G L D G FKP + + I+V+ S+ + Sbjct: 8 RVLEHKAAGH------DGTLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDAP 61 Query: 60 IHRYFPVYHGT----QAVEGSDGAAMM---------------------------VLENLL 88 + + P Y G +E S AA++ VLENLL Sbjct: 62 LCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLL 121 Query: 89 AEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGFRISGFEV 139 ++KP+++D+K+G + AS E ++ + TT+ S GFRI G ++ Sbjct: 122 YGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKI 172 >2A98-A nrPDB Length = 259 Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 44/175 (25%) Query: 40 GEIEVKFYESFSSNTE--VPEHIHRYFPVYHGTQAVEGSDGAAMMVLENLLAEYTKPSVM 97 G I +F + + E + + + + P Y+G DG +E+LLA++ PS+M Sbjct: 3 GRILKRFCQCEQRSLEQLMKDPLRPFVPAYYGMVL---QDGQTFNQMEDLLADFEGPSIM 59 Query: 98 DVKMGSRTWYPD---------------------------ASEEYIQKCLKK-------DT 123 D KMGSRT+ + EE+ Q + K +T Sbjct: 60 DCKMGSRTYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQWRET 119 Query: 124 GTTTVSSGFRISGFEVYDHKESSFWKPERKLLRGLD-----VDGARLTLRKFVSS 173 ++T + GFRI G + D ++ +K + L + VDG + L+K+V+ Sbjct: 120 MSSTSTLGFRIEGIKKADGTCNTNFKKTQALEQVTKVLEDFVDGDHVILQKYVAC 174 >2AQX-A nrPDB Length = 289 Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 37/113 (32%) Query: 63 YFPVYHGTQAVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWY--------------- 107 + P YHG DG +++LLA++ P VMD KMG RT+ Sbjct: 58 FVPAYHGDVV---KDGERYNQMDDLLADFDSPCVMDCKMGVRTYLEEELTKARKKPSLRK 114 Query: 108 ----------PDA--SEEYIQKCLKK-------DTGTTTVSSGFRISGFEVYD 141 P+A EE Q+ + K +T ++T + GFRI G + D Sbjct: 115 DMYQKMVEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKED 167 >1W2F-A nrPDB Length = 276 Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 43/155 (27%) Query: 65 PVYHGTQAVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWY----------------- 107 P +HG V DG + + L++LL + P V+D KMG RT+ Sbjct: 47 PAFHG---VVERDGESYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPKLRKDM 103 Query: 108 --------PDA--SEEYIQKCLKK-------DTGTTTVSSGFRISGFEVYDHKESSFWKP 150 P+A EE+ Q+ + K + +++ + GFRI G + D S+ +K Sbjct: 104 YKKMLAVDPEAPTEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADGSCSTDFKT 163 Query: 151 ER---KLLRGLD--VDGARLTLRKFVSS-NSLSDT 179 R ++LR + V G LR++++ + DT Sbjct: 164 TRSREQVLRVFEEFVQGDEEVLRRYLNRLQQIRDT 198 >3HJ6-A nrPDB Length = 327 Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 65 PVYHGTQAVEGSDGAAMMVLENLL--AEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKD 122 P Y EG DGA V+E ++ A++ KPS+ D + + PD+ E Y+++ L+ Sbjct: 182 PCYRKVLWPEGDDGAG--VVEEIISRADFVKPSLDDAR---HLFGPDSPENYVKRYLELG 236 Query: 123 TGTTTVSSG 131 ++ G Sbjct: 237 VKAVILTLG 245 >4WNR-A nrPDB Length = 349 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 206 KTWFENQTLYHFNSCSILMVYENESI-LKGNDDDARPQVKLVDFAHVLDGNGVIDH 260 K+WFE +T SC+ + E +I L+ N D Q LVDF + L GVI H Sbjct: 209 KSWFEVKTKLEKMSCNFITYEEYRNICLEENVGDKSSQNTLVDFLNDL---GVIVH 261 >3JCP-I nrPDB Length = 437 Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 220 CSILMVYENESILKGNDDDARPQVKLVDFAHVLDGNGVIDHNFLGGLCSFINFIREILQS 279 CS+L+ ++ SI+ DDA P V ++ +D + ++ +GGL S I I+E ++ Sbjct: 145 CSVLLHHKTMSIVGVLQDDADPMVSVMK----MDKSPTESYSDIGGLESQIQEIKESVEL 200 Query: 280 P 280 P Sbjct: 201 P 201 >6FVU-I nrPDB Length = 384 Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 220 CSILMVYENESILKGNDDDARPQVKLVDFAHVLDGNGVIDHNFLGGLCSFINFIREILQS 279 CS+L+ ++ SI+ DDA P V ++ +D + ++ +GGL S I I+E ++ Sbjct: 92 CSVLLHHKTMSIVGVLQDDADPMVSVMK----MDKSPTESYSDIGGLESQIQEIKESVEL 147 Query: 280 P 280 P Sbjct: 148 P 148 >1ZFJ-A nrPDB Length = 491 Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 165 LTLRKFVSSNSLSDTGSKPDSAFASSVYGGSHGILTQLLELKTWFENQTLYHFNSCS 221 +T F + +L + G+ D+ + +G S G+L ++ E++ F N+TL N + Sbjct: 230 VTSDTFERAEALFEAGA--DAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIAT 284 >3S2F-A nrPDB Length = 340 Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 134 ISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSVYG 193 ISG H + + + +D+D A+L L + + + + +A+ G Sbjct: 172 ISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIG 231 Query: 194 GSHGILTQLLELKTW 208 G+HG+L + K + Sbjct: 232 GAHGVLVTAVSPKAF 246 >6CGV-M nrPDB Length = 585 Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Query: 131 GFRISGFEV--------YDHKESSFWKPE-RKLLRGLDVDGARLTLRK--FVSSNSLSDT 179 GF GFEV +D + S + P+ + LL + A LRK F +SLSD Sbjct: 395 GFYTGGFEVPEGNDGFLWDDIDDSVFSPQPQTLLELQQREQAEAALRKESFRRPSSLSDL 454 Query: 180 GSKPDSAFASSVYGGSHGILT 200 G+ + ASS + G LT Sbjct: 455 GAAAPRSDASSPFPSLIGSLT 475 >3N2O-A nrPDB Length = 648 Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 23 LVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEH--IHRYFPVYHGTQAVEGSDGAA 80 L+ K RF +P+ + + KF+ +FS +P+ I + FPV + +D A Sbjct: 445 LMSTKNRFHRPILDELSERLADKFFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRA 504 Query: 81 MMV 83 +M+ Sbjct: 505 VML 507 >3RBM-A nrPDB Length = 396 Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust. Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 50 FSSNTEVPEHIHRYFPVYHGTQAVEGSDGAAMMVLENLLAEYTK 93 +S E+ EHI +Y+ + + G + ++V+ L+ EY K Sbjct: 55 YSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVI--LIYEYVK 96 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4FRF-A nrPDB 412 e-116 5W2G-A nrPDB 314 4e-86 6E7F-A nrPDB 299 1e-81 4O4C-A nrPDB 222 1e-58 2A98-A nrPDB 157 6e-39 2IF8-A nrPDB 142 2e-34 2AQX-A nrPDB 119 2e-27 Sequences not found previously or not previously below threshold: 1W2F-A nrPDB 112 2e-25 4LQ3-A nrPDB 33 0.14 2HDF-A nrPDB 30 1.5 6GML-V nrPDB 29 2.9 3EQO-A nrPDB 29 3.0 >4FRF-A nrPDB Length = 275 Score = 412 bits (1058), Expect = e-116, Method: Composition-based stats. Identities = 272/275 (98%), Positives = 272/275 (98%) Query: 12 GHIAKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQ 71 G KDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQ Sbjct: 1 GSHMKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQ 60 Query: 72 AVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSG 131 AVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSG Sbjct: 61 AVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSG 120 Query: 132 FRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSV 191 FRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSV Sbjct: 121 FRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSV 180 Query: 192 YGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFAHV 251 YGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFAHV Sbjct: 181 YGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFAHV 240 Query: 252 LDGNGVIDHNFLGGLCSFINFIREILQSPDESADS 286 LDGNGVIDHNFLGGLCSFINFIREILQSPDESADS Sbjct: 241 LDGNGVIDHNFLGGLCSFINFIREILQSPDESADS 275 >5W2G-A nrPDB Length = 257 Score = 314 bits (803), Expect = 4e-86, Method: Composition-based stats. Identities = 80/275 (29%), Positives = 129/275 (46%), Gaps = 26/275 (9%) Query: 8 HQVAGHIAKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNT---EVPEHIHRYF 64 HQVAGH+ GK L G K LQ RG E++FY + V + +Y Sbjct: 6 HQVAGHMY--GKI--LQHPDGTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYL 61 Query: 65 PVYHGTQAVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTG 124 P Y+G + + + LE++ ++ KP +MDVK+G +++ P AS E IQ+ + K Sbjct: 62 PKYYGIWSPPTAPNDLYLKLEDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQQQVSKYPL 121 Query: 125 TTTVSSGFRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPD 184 + GF + G VY S+ + R L + T++ VS + + D Sbjct: 122 MEEI--GFLVLGMRVYHVHSDSYETENQHYGRSL----TKETIKDGVSRFFHNGYCLRKD 175 Query: 185 SAFASSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVK 244 + AS + ++ ++ WFENQ +F + S+L VYE S + +V+ Sbjct: 176 AVAAS---------IQKIEKILQWFENQKQLNFYASSLLFVYEGSSQGGSGGE---VEVR 223 Query: 245 LVDFAHVLDGNGVIDHNFLGGLCSFINFIREILQS 279 ++DFAHV N ID ++ GL I+ +R IL + Sbjct: 224 MIDFAHVFPSN-TIDEGYVYGLKHLISVLRSILDN 257 >6E7F-A nrPDB Length = 278 Score = 299 bits (764), Expect = 1e-81, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 42/279 (15%) Query: 27 KGRFFKPLQGDSRGEIEVKFYESFSSNT---EVPEHIHRYFPVYHGTQAVEGSDGAAMMV 83 G K LQ RG E++FY + V + +Y P Y+G + + + Sbjct: 16 DGTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYLPKYYGIWSPPTAPNDLYLK 75 Query: 84 LENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGFRISGFEVYDHK 143 LE++ ++ KP +MDVK+G +++ P AS E IQ+ + K + GF + G VY Sbjct: 76 LEDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQQQVSKYPLMEEI--GFLVLGMRVYHVH 133 Query: 144 ESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSVYGGSHGILTQLL 203 S+ + R L + T++ VS + + D+ AS + ++ Sbjct: 134 SDSYETENQHYGRSL----TKETIKDGVSRFFHNGYCLRKDAVAAS---------IQKIE 180 Query: 204 ELKTWFENQTLYHFNSCSILMVYENES---ILKGND--------------------DDAR 240 ++ WFENQ +F + S+L VYE S K ND + A Sbjct: 181 KILQWFENQKQLNFYASSLLFVYEGSSQPTTTKLNDRTLAEKFLSGGGGSGGGGSQEIAE 240 Query: 241 PQVKLVDFAHVLDGNGVIDHNFLGGLCSFINFIREILQS 279 +V+++DFAHV N ID ++ GL I+ +R IL + Sbjct: 241 VEVRMIDFAHVFPSN-TIDEGYVYGLKHLISVLRSILDN 278 >4O4C-A nrPDB Length = 255 Score = 222 bits (566), Expect = 1e-58, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 116/270 (42%), Gaps = 27/270 (10%) Query: 12 GHIAKDGKPGPLV-DDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGT 70 G G GP G++ E FY + E P ++G Sbjct: 1 GSFTAGGHGGPQQLHPDGQYLLK---PCLSHRERDFYLHIKDDKEWTGT--GIIPKFYGV 55 Query: 71 QAVEGSDGAAMMV-LENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVS 129 + E G + +ENL+ +Y +P V+D+K+G++TW P+ + ++K L D+ +TT S Sbjct: 56 ELHEFGFGELEFIRMENLMYKYKRPFVLDLKIGTQTWDPETASSKMKKRLVVDSTSTTTS 115 Query: 130 SGFRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFAS 189 G R SG E +E + L +V+ R +L++++ + G K Sbjct: 116 LGVRFSGMERNIGEEKPILYS--RYLCTHEVN-TRDSLKEYI--KLFFNDGKKYRKELVP 170 Query: 190 SVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFA 249 L +++E+ E Y S S+L VY++ + L +D + K++DFA Sbjct: 171 YFISQ----LDKMIEVMKKRE----YKMFSSSVLFVYDSTTTL----EDKKYNCKMIDFA 218 Query: 250 H---VLDGNGVIDHNFLGGLCSFINFIREI 276 H + + ++ FL GL + + + +I Sbjct: 219 HNWILSEEECTVEDGFLFGLNNLKSILEDI 248 >2A98-A nrPDB Length = 259 Score = 157 bits (396), Expect = 6e-39, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 108/285 (37%), Gaps = 73/285 (25%) Query: 40 GEIEVKFYESFSSNTE--VPEHIHRYFPVYHGTQAVEGSDGAAMMVLENLLAEYTKPSVM 97 G I +F + + E + + + + P Y+G DG +E+LLA++ PS+M Sbjct: 3 GRILKRFCQCEQRSLEQLMKDPLRPFVPAYYGMVL---QDGQTFNQMEDLLADFEGPSIM 59 Query: 98 DVKMGSRTWYPD---------------------------ASEEYIQKCLKK-------DT 123 D KMGSRT+ + EE+ Q + K +T Sbjct: 60 DCKMGSRTYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQWRET 119 Query: 124 GTTTVSSGFRISGFEVYDHKESSFWKPERKLLRGLD-----VDGARLTLRKFVSSNSLSD 178 ++T + GFRI G + D ++ +K + L + VDG + L+K+V+ Sbjct: 120 MSSTSTLGFRIEGIKKADGTCNTNFKKTQALEQVTKVLEDFVDGDHVILQKYVAC----- 174 Query: 179 TGSKPDSAFASSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDD 238 L +L E + S+L V+++ + K D Sbjct: 175 --------------------LEELREALEISPFFKTHEVVGSSLLFVHDHTGLAKVWMID 214 Query: 239 ARPQVKLVD---FAHVLD-GNGVIDHNFLGGLCSFINFIREILQS 279 V L D +H L G + +L GL + I ++ + QS Sbjct: 215 FGKTVALPDHQTLSHRLPWAEGNREDGYLWGLDNMICLLQGLAQS 259 >2IF8-A nrPDB Length = 363 Score = 142 bits (357), Expect = 2e-34, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 100/279 (35%), Gaps = 73/279 (26%) Query: 4 KVPEHQVAGHIAKDGKPGPLVDDKGRF-FKPL---QGDSRGEIEVKFYESFSSNTEVPEH 59 +V EH+ AGH G L D G FKP + + I+V+ S+ + Sbjct: 8 RVLEHKAAGH------DGTLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDAP 61 Query: 60 IHRYFPVYHGT----QAVEGSDGAA---------------------------MMVLENLL 88 + + P Y G +E S AA +VLENLL Sbjct: 62 LCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLL 121 Query: 89 AEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGFRISGFEV--------- 139 ++KP+++D+K+G + AS E ++ + TT+ S GFRI G ++ Sbjct: 122 YGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLNQ 181 Query: 140 -----YDHKESS-FWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSVYG 193 Y+ + S + + R + + ++ LSD Sbjct: 182 LSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSD--------------A 227 Query: 194 GSHGILTQLLELKTWFEN---QTLYHFNSCSILMVYENE 229 H + L+ F N + S S+L +YE + Sbjct: 228 RKHQLKKTFLKRLQLFYNTMLEEEVRMISSSLLFIYEGD 266 >2AQX-A nrPDB Length = 289 Score = 119 bits (298), Expect = 2e-27, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 100/288 (34%), Gaps = 81/288 (28%) Query: 40 GEIEVKFYESFSSNTE--VPEHIHRYFPVYHGTQAVEGSDGAAMMVLENLLAEYTKPSVM 97 G I K ES + + + + + P YHG DG +++LLA++ P VM Sbjct: 33 GRILKKHCESEQRCLDRLMADVLRPFVPAYHGDVV---KDGERYNQMDDLLADFDSPCVM 89 Query: 98 DVKMGSRTW-------------------------YPDAS--EEYIQKCLKK-------DT 123 D KMG RT+ P+A EE Q+ + K +T Sbjct: 90 DCKMGVRTYLEEELTKARKKPSLRKDMYQKMVEVDPEAPTEEEKAQRAVTKPRYMQWRET 149 Query: 124 GTTTVSSGFRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKP 183 ++T + GFRI G + D + +K + + + R+F N Sbjct: 150 ISSTATLGFRIEGIKKEDGSVNRDFKKTKTREQVTE------AFREFTKGN--------- 194 Query: 184 DSAFASSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQV 243 Y + LE+ +F + S+L +++ + K V Sbjct: 195 --QNILIAYRDRLKAIRATLEISPFF---KCHEVIGSSLLFIHDKKEQAK---------V 240 Query: 244 KLVDFAHVLD-------------GNGVIDHNFLGGLCSFINFIREILQ 278 ++DF G + +L GL + I+ + E+ Q Sbjct: 241 WMIDFGKTTPLPEGQTLQHDVPWQEGNREDGYLSGLDNLIDILTEMSQ 288 >1W2F-A nrPDB Length = 276 Score = 112 bits (279), Expect = 2e-25, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 103/322 (31%), Gaps = 103/322 (31%) Query: 9 QVAGHIAKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYH 68 Q+AGH G G K E + + + + P +H Sbjct: 5 QLAGHTGSFKAAGT----SGLILKRCSEP----------ERYCLARLMADALRGCVPAFH 50 Query: 69 GTQAVEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTW---------------------- 106 G DG + + L++LL + P V+D KMG RT+ Sbjct: 51 GVV---ERDGESYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPKLRKDMYKKM 107 Query: 107 ---YPDAS--EEYIQKCLKK-------DTGTTTVSSGFRISGFEVYDHKESSFWKPERKL 154 P+A EE+ Q+ + K + +++ + GFRI G + D S+ +K R Sbjct: 108 LAVDPEAPTEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADGSCSTDFKTTRSR 167 Query: 155 LRGLD-----VDGARLTLRKFVSSNSLSDTGSKPDSAFASSVYGGSHGILTQLLELKTWF 209 + L V G LR++++ L Q+ + Sbjct: 168 EQVLRVFEEFVQGDEEVLRRYLNR-------------------------LQQIRDTLEVS 202 Query: 210 ENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFAHVLD-------------GNG 256 E + S+L V+ D R V L+DF G Sbjct: 203 EFFRRHEVIGSSLLFVH---------DHCHRAGVWLIDFGKTTPLPDGQILDHRRPWEEG 253 Query: 257 VIDHNFLGGLCSFINFIREILQ 278 + +L GL + I + + + Sbjct: 254 NREDGYLLGLDNLIGILASLAE 275 >4LQ3-A nrPDB Length = 526 Score = 33.2 bits (74), Expect = 0.14, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 14/118 (11%) Query: 25 DDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQAVEGSDG-AAMMV 83 D KG + ++ F ++ P Y P Y G + G + V Sbjct: 4 DSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQV 63 Query: 84 LENLLAEYT-------KPSVMD------VKMGSRTWYPDASEEYIQKCLKKDTGTTTV 128 + + L +T KPSV++ + + +T P + Q C D T++ Sbjct: 64 MRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFTQACASLDKTTSSG 121 >2HDF-A nrPDB Length = 639 Score = 29.8 bits (65), Expect = 1.5, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Query: 91 YTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGFRISGFEVYDHKESSFWKP 150 +T ++D +G + + S +K +++ TT RI GF D W P Sbjct: 165 FTSGPLIDGVLGMKAY---GSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVEFAWTP 221 Query: 151 ER 152 + Sbjct: 222 NQ 223 >6GML-V nrPDB Length = 577 Score = 28.6 bits (62), Expect = 2.9, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 21/123 (17%) Query: 36 GDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQAVEGSDGAAMMVLENLLAE----Y 91 D G ++F++S + + A EG LE+LL + Sbjct: 48 LDLHGTPRLEFHQSVF------DELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLV 101 Query: 92 TKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGFRISGFEVYDHKESSFWKPE 151 PS+ V M P E+ ++ + +R EV + W+ Sbjct: 102 KMPSLQPVVMCVMKHLPKVPEKKLKLVMADKEL-------YRACAVEV----KRQIWQDN 150 Query: 152 RKL 154 + L Sbjct: 151 QAL 153 >3EQO-A nrPDB Length = 758 Score = 28.6 bits (62), Expect = 3.0, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 6/73 (8%) Query: 12 GHIAKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEH------IHRYFP 65 G+IA +PG L+D GR G F S + H I F Sbjct: 366 GNIANINRPGVLLDSTGRIVSKSHPQYTGYAPSDFVSVRSQGAKGDGHTDDTQAIKNVFA 425 Query: 66 VYHGTQAVEGSDG 78 Y G + + G Sbjct: 426 KYAGCKIIFFDAG 438 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.123 0.297 Lambda K H 0.267 0.0374 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,715,590 Number of Sequences: 36641 Number of extensions: 361108 Number of successful extensions: 949 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 897 Number of HSP's gapped (non-prelim): 35 length of query: 286 length of database: 10,336,785 effective HSP length: 96 effective length of query: 190 effective length of database: 6,819,249 effective search space: 1295657310 effective search space used: 1295657310 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 58 (27.1 bits)