BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q9HD40
(501 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
3HL2-A nrPDB 1042 0.0
3BC8-A nrPDB 865 0.0
2Z67-A nrPDB 229 2e-60
2C44-A nrPDB 37 0.021
3IF2-A nrPDB 33 0.32
3CF4-G nrPDB 31 1.0
6EM4-A nrPDB 31 1.1
2E7J-A nrPDB 31 1.2
3ZXU-A nrPDB 30 2.4
6ENZ-A nrPDB 30 3.0
5VBF-A nrPDB 30 3.3
5X45-A nrPDB 29 3.6
3V3T-A nrPDB 28 6.9
3IBV-A nrPDB 28 7.7
>3HL2-A nrPDB
Length = 501
Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/501 (100%), Positives = 501/501 (100%)
Query: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI
Sbjct: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60
Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS
Sbjct: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
Query: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI 180
LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI
Sbjct: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI 180
Query: 181 TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAV 240
TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAV
Sbjct: 181 TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAV 240
Query: 241 ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND 300
ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND
Sbjct: 241 ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND 300
Query: 301 SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN 360
SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN
Sbjct: 301 SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN 360
Query: 361 ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFR 420
ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFR
Sbjct: 361 ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFR 420
Query: 421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVD 480
GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVD
Sbjct: 421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVD 480
Query: 481 IEEMALKLDNVLLDTYQDASS 501
IEEMALKLDNVLLDTYQDASS
Sbjct: 481 IEEMALKLDNVLLDTYQDASS 501
>3BC8-A nrPDB
Length = 450
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/449 (90%), Positives = 437/449 (97%)
Query: 19 RQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGR 78
RQGCEARR+HEHLIRLLLE+GKCPE+GWDESTLELFLHELA+MDSNNFLGNCGVGEREGR
Sbjct: 1 RQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGR 60
Query: 79 VASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCF 138
VASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVL++IKLAGVH+VA+CF
Sbjct: 61 VASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCF 120
Query: 139 VVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDEL 198
VVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM+TAGFEPVVIENVLEGDEL
Sbjct: 121 VVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDEL 180
Query: 199 RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQ 258
RTDLKAVEAK+QELGP+ ILC+HSTT+CFAPRVPDRLEELAVICANYDIPH+VNNAYG+Q
Sbjct: 181 RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQ 240
Query: 259 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASP 318
SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFN+ FIQ+ISKMYPGRASASP
Sbjct: 241 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASP 300
Query: 319 SLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLK 378
SLDVLITLLSLG +GY+KLLKERKEMF YLS Q+KKL+EA+NERLL TPHNPISLAMTLK
Sbjct: 301 SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLK 360
Query: 379 TLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAAS 438
T+D H DKAVTQLGSMLFTRQVSGAR VPLG++QTVSG+TFRGFMSH +NYPCAYLNAA+
Sbjct: 361 TIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAA 420
Query: 439 AIGMKMQDVDLFIKRLDRCLKAVRKERSK 467
AIGMKMQDVDLFIKRLD+CL VRKE+++
Sbjct: 421 AIGMKMQDVDLFIKRLDKCLNIVRKEQTR 449
>2Z67-A nrPDB
Length = 456
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/425 (33%), Positives = 238/425 (56%), Gaps = 32/425 (7%)
Query: 40 KCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSG 99
K PENG D+ ++LFL L++MD++ + +GERE R S + F HGIGRSG
Sbjct: 57 KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSG 116
Query: 100 DISAVQPKAAGSSLLNKITNSLVLDIIKLAG--VHTVANCFVVPMATGMSLTLCFLTLRH 157
++ QPKA+G+S++ +TN ++ K G VH +A P++TGMS++LC L+
Sbjct: 117 NLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIA----TPISTGMSISLC-LSAAR 171
Query: 158 KRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQ---ELGP 214
K+ + +I+P KS K++ G ++E VL+GD + ++ +E ++ ELG
Sbjct: 172 KKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGN 231
Query: 215 DCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGR 274
C+ ST + F PR D + E+A IC NYDIPHI+N AY +Q++ + +++ + R
Sbjct: 232 RP--CVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY-R 288
Query: 275 IDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGY 334
+DA V S DKN + P+GG ++ + FI+EIS YPGRASA+P ++ L++LLS+GS Y
Sbjct: 289 VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNY 348
Query: 335 KKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSM 394
+L+K +K L + LS+ + L +PI+ +++ + ++ +
Sbjct: 349 LELVKNQKNSKKLLDELLNDLSKKTGGKFLDV-ESPIASCISVNS-------DPVEIAAK 400
Query: 395 LFTRQVSGARVVPLGSMQTVS-GYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKR 453
L+ +V+G R G +T G + G +H Y+ +AIG++ +D+ + +
Sbjct: 401 LYNLRVTGPR----GIKKTDHFGNCYLGTYTHD------YIVMNAAIGVRTEDIVNSVSK 450
Query: 454 LDRCL 458
L++ L
Sbjct: 451 LEKIL 455
>2C44-A nrPDB
Length = 471
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 201 DLKAVEAKVQELGPD----CILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVN---- 252
DL+ +E ++E+GP+ + I S ++ P L+ + I YDIP +++
Sbjct: 172 DLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF 231
Query: 253 --NAYGVQSSKCMH---LIQQGAR--VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFI 303
NAY ++ + + I+Q R D S K+ MVP+GG ++ +DSF
Sbjct: 232 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGG-LLCMKDDSFF 288
>3IF2-A nrPDB
Length = 444
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 186 PVVIENVLEGDE----LRTDLKAVE--AKVQELGPDCILCIHSTTSCFAPRVPDRLEELA 239
P + E +G+E R D +A+E ++E I C T + + LA
Sbjct: 173 PHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLA 232
Query: 240 VICANYDIPHIVNNAYGV 257
I YDIP I++NAYG+
Sbjct: 233 EIAKRYDIPLIIDNAYGM 250
>3CF4-G nrPDB
Length = 170
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 120 SLVLDIIKLAGVHTVANCFVVPMA-TGMSLTLCFLTLRHKRPKAKYI------------I 166
+L LD L V ++ +P+A TG SL + L K AKYI
Sbjct: 43 TLALDPELLDRVVKISKAANIPIAATGSSLAV----LADKDVDAKYINAHMLGFYLTDPK 98
Query: 167 WPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAV 205
WP +D + +IT GF+ I VL + ++LK +
Sbjct: 99 WPGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSNLKTI 137
>6EM4-A nrPDB
Length = 291
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 26 RSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGER 75
R H+ L L L K P NG T++ ++ L MD NF GNC G R
Sbjct: 92 RKHQDLY-LWLSK---PPNG---PTIKFYIQNLHTMDELNFTGNCLKGSR 134
>2E7J-A nrPDB
Length = 371
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 16/61 (26%)
Query: 231 VPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPV 290
+PD ++++A +C+ YD+P +VN AY +GR+ ++ + +F+V
Sbjct: 163 LPD-VKKIAKVCSEYDVPLLVNGAYA---------------IGRMPVSLKEIGADFIVGS 206
Query: 291 G 291
G
Sbjct: 207 G 207
>3ZXU-A nrPDB
Length = 296
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 194 EGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNN 253
E + ++ D++A+E ++Q + I HS S ++PD ++ + N + +++
Sbjct: 6 ETEAVQQDIEALEREIQTIKIQ-IANAHSGASKDEVKIPDAYKQF--LSENINFSNLMRK 62
Query: 254 AYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGF 298
S + + G G+I S+ NF V G +AGF
Sbjct: 63 DENTTLSINLSPRKPGTTTGQIQGIDSSIRSNFGVSSGHNEVAGF 107
>6ENZ-A nrPDB
Length = 530
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 80 ASALVARRHYRFIHGIGRSGDIS 102
SALV+R+H R +HGI R+ ++
Sbjct: 315 GSALVSRKHRRLLHGIHRADSVA 337
>5VBF-A nrPDB
Length = 478
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 13/131 (9%)
Query: 178 SMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP-DRLE 236
+M G PV++ + D R K + G C+ S T F R DR
Sbjct: 249 TMELGGHAPVLV--CADADVERAAAMLAAYKFRNAGQVCV----SPTRFFVQRAAFDRF- 301
Query: 237 ELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFV-QSLDKNFMVPVGGAII 295
+CA D + YG+ + M + RV IDAFV + K + GG +
Sbjct: 302 ----VCAYLDAVGTIRVGYGLDAGVTMGPLAHARRVDEIDAFVADATAKGAQIATGGMRL 357
Query: 296 AGFNDSFIQEI 306
G F +
Sbjct: 358 PGPGHYFAPTV 368
>5X45-A nrPDB
Length = 139
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGV 257
L DL+ V GPD I C T C+ R DR V C ++D I + Y
Sbjct: 33 LTADLQVDSTNVP--GPDVIPCCDCTAGCYYSRSKDRY--FPVECVSHDWYEIQESGYYP 88
Query: 258 QSSKCMHLIQQG 269
+ + LI +G
Sbjct: 89 KHIQYNLLIGEG 100
>3V3T-A nrPDB
Length = 360
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 38/197 (19%)
Query: 324 ITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKT---- 379
I++ L +N +K KE F+ L N +SE++ E ++ + IS +T+K
Sbjct: 159 ISIYLLDNNKREKESDINKE-FATLFNDFMNMSESHAEGVVD--EDEISKLLTMKKSNVI 215
Query: 380 --LDEHRDKAVT---QLGSMLFTRQ---------VSGARVVPLGSMQTVSGY---TFRGF 422
D+ D V L +F +S RVV + +++++ GY TF+G+
Sbjct: 216 LEFDDKEDIQVALAKSLKESIFAEYTTNTCEFMGISTTRVVDVEAIKSIVGYPRRTFKGY 275
Query: 423 MSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESD--------DNYD 474
S N + A+ I + V + + ++ +K R+ SK + D+ D
Sbjct: 276 NSKKN------IVVATGIEPQKTTVQMMNEIIEDKMKQRREVTSKSENMIIEPIALDDED 329
Query: 475 KTEDVDIEEMALKLDNV 491
+ E + +DNV
Sbjct: 330 NKSVISSNEKEISIDNV 346
>3IBV-A nrPDB
Length = 980
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 450 FIKRL-DRCLKAVRKERSKESDDNYDKTEDVDIEEMALKL 488
F+K L + +K ++ + S+E DD+ D E+ + +EM KL
Sbjct: 379 FLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKL 418
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
3HL2-A nrPDB 914 0.0
3BC8-A nrPDB 811 0.0
2Z67-A nrPDB 583 e-167
Sequences not found previously or not previously below threshold:
3MC6-C nrPDB 47 2e-05
2C44-A nrPDB 44 2e-04
3IF2-A nrPDB 40 0.003
4Q6R-A nrPDB 38 0.009
2E7J-A nrPDB 37 0.019
6JRL-A nrPDB 35 0.070
5W1B-A nrPDB 33 0.37
3ELE-A nrPDB 32 0.46
4IM4-A nrPDB 32 0.70
4JIS-A nrPDB 32 0.88
5VBF-A nrPDB 31 0.99
3IBV-A nrPDB 30 1.7
5JH9-A nrPDB 30 1.9
6H23-A nrPDB 29 5.1
6BDY-A nrPDB 29 5.5
3IV9-A nrPDB 29 5.5
6EM4-A nrPDB 28 7.4
1TG6-A nrPDB 28 9.1
>3HL2-A nrPDB
Length = 501
Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats.
Identities = 501/501 (100%), Positives = 501/501 (100%)
Query: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI
Sbjct: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60
Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS
Sbjct: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
Query: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI 180
LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI
Sbjct: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI 180
Query: 181 TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAV 240
TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAV
Sbjct: 181 TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAV 240
Query: 241 ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND 300
ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND
Sbjct: 241 ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND 300
Query: 301 SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN 360
SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN
Sbjct: 301 SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN 360
Query: 361 ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFR 420
ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFR
Sbjct: 361 ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFR 420
Query: 421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVD 480
GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVD
Sbjct: 421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVD 480
Query: 481 IEEMALKLDNVLLDTYQDASS 501
IEEMALKLDNVLLDTYQDASS
Sbjct: 481 IEEMALKLDNVLLDTYQDASS 501
>3BC8-A nrPDB
Length = 450
Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats.
Identities = 405/449 (90%), Positives = 437/449 (97%)
Query: 19 RQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGR 78
RQGCEARR+HEHLIRLLLE+GKCPE+GWDESTLELFLHELA+MDSNNFLGNCGVGEREGR
Sbjct: 1 RQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGR 60
Query: 79 VASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCF 138
VASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVL++IKLAGVH+VA+CF
Sbjct: 61 VASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCF 120
Query: 139 VVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDEL 198
VVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM+TAGFEPVVIENVLEGDEL
Sbjct: 121 VVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDEL 180
Query: 199 RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQ 258
RTDLKAVEAK+QELGP+ ILC+HSTT+CFAPRVPDRLEELAVICANYDIPH+VNNAYG+Q
Sbjct: 181 RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQ 240
Query: 259 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASP 318
SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFN+ FIQ+ISKMYPGRASASP
Sbjct: 241 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASP 300
Query: 319 SLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLK 378
SLDVLITLLSLG +GY+KLLKERKEMF YLS Q+KKL+EA+NERLL TPHNPISLAMTLK
Sbjct: 301 SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLK 360
Query: 379 TLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAAS 438
T+D H DKAVTQLGSMLFTRQVSGAR VPLG++QTVSG+TFRGFMSH +NYPCAYLNAA+
Sbjct: 361 TIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAA 420
Query: 439 AIGMKMQDVDLFIKRLDRCLKAVRKERSK 467
AIGMKMQDVDLFIKRLD+CL VRKE+++
Sbjct: 421 AIGMKMQDVDLFIKRLDKCLNIVRKEQTR 449
>2Z67-A nrPDB
Length = 456
Score = 583 bits (1502), Expect = e-167, Method: Composition-based stats.
Identities = 141/425 (33%), Positives = 238/425 (56%), Gaps = 32/425 (7%)
Query: 40 KCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSG 99
K PENG D+ ++LFL L++MD++ + +GERE R S + F HGIGRSG
Sbjct: 57 KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSG 116
Query: 100 DISAVQPKAAGSSLLNKITNSLVLDIIKLAG--VHTVANCFVVPMATGMSLTLCFLTLRH 157
++ QPKA+G+S++ +TN ++ K G VH +A P++TGMS++LC L+
Sbjct: 117 NLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIA----TPISTGMSISLC-LSAAR 171
Query: 158 KRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQ---ELGP 214
K+ + +I+P KS K++ G ++E VL+GD + ++ +E ++ ELG
Sbjct: 172 KKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGN 231
Query: 215 DCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGR 274
C+ ST + F PR D + E+A IC NYDIPHI+N AY +Q++ + +++ + R
Sbjct: 232 RP--CVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY-R 288
Query: 275 IDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGY 334
+DA V S DKN + P+GG ++ + FI+EIS YPGRASA+P ++ L++LLS+GS Y
Sbjct: 289 VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNY 348
Query: 335 KKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSM 394
+L+K +K L + LS+ + L +PI+ +++ + ++ +
Sbjct: 349 LELVKNQKNSKKLLDELLNDLSKKTGGKFLDV-ESPIASCISVNS-------DPVEIAAK 400
Query: 395 LFTRQVSGARVVPLGSMQTVS-GYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKR 453
L+ +V+G R G +T G + G +H Y+ +AIG++ +D+ + +
Sbjct: 401 LYNLRVTGPR----GIKKTDHFGNCYLGTYTHD------YIVMNAAIGVRTEDIVNSVSK 450
Query: 454 LDRCL 458
L++ L
Sbjct: 451 LEKIL 455
>3MC6-C nrPDB
Length = 497
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 34/245 (13%)
Query: 147 SLTLCFLTLR-----HKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTD 201
SL L L+ + H+ II P K+ G + +E L+ + D
Sbjct: 138 SLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVE--LDPTTYQVD 195
Query: 202 LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYG----- 256
L KV++ + + + F + D +E L I Y +P V++ G
Sbjct: 196 L----GKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVS 251
Query: 257 -VQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE---ISKMYPG 312
++ + +L RV + + K P G ++I N ++ + G
Sbjct: 252 FMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTG 311
Query: 313 RASASP----------SLDVLITLLSLGSNGY----KKLLKERKEMFSYLSNQIKKLSEA 358
SP + T++++G NGY ++++ + Y+ I L
Sbjct: 312 GLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIM 371
Query: 359 YNERL 363
N R
Sbjct: 372 GNPRY 376
>2C44-A nrPDB
Length = 471
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 201 DLKAVEAKVQELGPDCILCIHSTTSCFA----PRVPDRLEELAVICANYDIPHIVNNAYG 256
DL+ +E ++E+GP+ + I +T + + P L+ + I YDIP ++++A
Sbjct: 172 DLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF 231
Query: 257 VQSSKCMHLIQQGAR-----------VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSF 302
+++ + + + D S K+ MVP+GG + + F
Sbjct: 232 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFF 288
>3IF2-A nrPDB
Length = 444
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 181 TAGFEPVVIENVLEGDE----LRTDLKAVEA--KVQELGPDCILCIHSTTSCFAPRVPDR 234
A P + E +G+E R D +A+E ++E I C T +
Sbjct: 168 FAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEE 227
Query: 235 LEELAVICANYDIPHIVNNAYGV 257
+ LA I YDIP I++NAYG+
Sbjct: 228 MAHLAEIAKRYDIPLIIDNAYGM 250
>4Q6R-A nrPDB
Length = 511
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 83/243 (34%), Gaps = 32/243 (13%)
Query: 158 KRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCI 217
K K I+ P+ + K+ G + V + + D++A+ +
Sbjct: 171 KGIKTPEIVAPQSAHAAFNKAASYFGMKIVRVPLT---KMMEVDVRAMRRAI----SRNT 223
Query: 218 LCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ------GAR 271
+ +T F V D + E+A + Y IP V+ G M R
Sbjct: 224 AMLVCSTPQFPHGVIDPVPEVAKLAVKYKIPLHVDACLGGFLIVFMEKAGYPLEHPFDFR 283
Query: 272 VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE---ISKMYPGRASASPSL-------- 320
V + + K P G +++ + + + + G ASP++
Sbjct: 284 VKGVTSISADTHKYGYAPKGSSLVLYSDKKYRNYQFFVDTDWQGGIYASPTIAGSRPGGI 343
Query: 321 --DVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLK 378
L+ G NGY + K+ + +L ++++ + + + NP + L
Sbjct: 344 SAACWAALMHFGENGYVEATKQIIKTARFLKSELENI------KGIFVFGNPQLSVIALG 397
Query: 379 TLD 381
+ D
Sbjct: 398 SRD 400
>2E7J-A nrPDB
Length = 371
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 234 RLEELAVICANYDIPHIVNNAYGV 257
++++A +C+ YD+P +VN AY +
Sbjct: 165 DVKKIAKVCSEYDVPLLVNGAYAI 188
>6JRL-A nrPDB
Length = 510
Score = 35.0 bits (79), Expect = 0.070, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 155 LRHKRPKAKYIIWPRIDQKSCF-KSMITAGFEPVVI----ENVLEGDELRTDLKAVEAKV 209
L + + + + SC K+ + A ++ + VL GD LR ++ A
Sbjct: 174 LSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAA- 232
Query: 210 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYG 256
G ++C+ +T D +E L+ +C + + V+ AY
Sbjct: 233 ---GRIPVICV-ATLGTTGTCAYDDIESLSAVCEEFKVWLHVDAAYA 275
>5W1B-A nrPDB
Length = 467
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
Query: 201 DLKAVEAKVQELGPDCILCIHSTTSCFA----PRVPDRLEELAVICANYDIPHIVNNAYG 256
D+K ++ + + G D I+ I ST +C + P L+E+ I + I ++++A
Sbjct: 168 DIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF 227
Query: 257 VQSSKCMHLIQQGAR-----------VGRIDAFVQSLDKNFMVPVGGAIIAGFNDS 301
+++ + + DA S K+ ++ +GG + N+
Sbjct: 228 CENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEE 283
>3ELE-A nrPDB
Length = 398
Score = 32.4 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 130 GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVI 189
G H A+ + M SL++CF L I P + F + AG ++
Sbjct: 94 GTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVF--VNAAG--ARLV 149
Query: 190 ENVLEGDELRTDLKAVEAKV 209
E + + + D A+E ++
Sbjct: 150 EVPADTEHFQIDFDALEERI 169
>4IM4-A nrPDB
Length = 336
Score = 32.0 bits (71), Expect = 0.70, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
Query: 320 LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNE-RLLHTPH--NPISLAMT 376
L V+ T+ + G N K+ + + L + L N+ R++ + H +P AM
Sbjct: 169 LAVVNTIRASGGNNDKRFILVPTNAATGLDVALNDLVIPNNDSRVIVSIHAYSPYFFAMD 228
Query: 377 LK-TLDEHRDKAVTQLGSML---FTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCA 432
+ T D L S L + R V R V +G T+ ++H +Y
Sbjct: 229 VNGTSYWGSDYDKASLTSELDAIYNRFVKNGRAVIIGEFGTIDKNNLSSRVAHAEHYARE 288
Query: 433 YLNAASAI 440
++ A+
Sbjct: 289 AVSRGIAV 296
>4JIS-A nrPDB
Length = 247
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 264 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYPGRASASPSL 320
I + G +D + ++D IIA + FI +I MY G+ S +
Sbjct: 126 ENIDAVLQYGAVDTVISAID---------TIIASEDQEFISDIPVRDNMYQGQTPQSFRI 176
Query: 321 DVLITLLSLGSNGYKKLLKERK 342
L+ L Y KL E+K
Sbjct: 177 SKLVEL-------YNKLSDEQK 191
>5VBF-A nrPDB
Length = 478
Score = 31.2 bits (69), Expect = 0.99, Method: Composition-based stats.
Identities = 56/254 (22%), Positives = 83/254 (32%), Gaps = 36/254 (14%)
Query: 178 SMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP-DRLE 236
+M G PV++ + D R K + G C+ S T F R DR
Sbjct: 249 TMELGGHAPVLV--CADADVERAAAMLAAYKFRNAGQVCV----SPTRFFVQRAAFDRF- 301
Query: 237 ELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQ-SLDKNFMVPVGGAII 295
+CA D + YG+ + M + RV IDAFV + K + GG +
Sbjct: 302 ----VCAYLDAVGTIRVGYGLDAGVTMGPLAHARRVDEIDAFVADATAKGAQIATGGMRL 357
Query: 296 AGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355
G PG A + LG +L+ + L
Sbjct: 358 PG-------------PGHYFAPTVV--------LGPTRDTRLMNDEPFGPIVGIVPFDDL 396
Query: 356 SEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVS 415
+A E P S A T + HR + G + G +P G ++ S
Sbjct: 397 DDALAEAN-RLPFGLASYAFTTSARNAHRISRALEAGMVNINHFGMGPAEIPFGGVK-DS 454
Query: 416 GYTFRGFMSHTNNY 429
G+ G M + Y
Sbjct: 455 GFGSEGGMEAFDGY 468
>3IBV-A nrPDB
Length = 980
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 454 LDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 501
L+ +K ++ + S+E DD+ D E+ + +EM KL + DT S
Sbjct: 384 LEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKL-KIFQDTINSIDS 430
>5JH9-A nrPDB
Length = 516
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 37/221 (16%)
Query: 227 FAPRVPDRLEE----LAVICANYDI----PHIVNNAYGVQSSKCMHLIQQGARVGRIDAF 278
FAPR+ DRL +A+IC D+ + + + + L +QGA+ G +++
Sbjct: 300 FAPRLDDRLCSFAAMIALICYAKDVNTEESDLFSTVTLYDNEEIGSLTRQGAKGGLLESV 359
Query: 279 VQSLDKNFM-VPVGGAIIAGFNDSFIQEISKMY-PGRASAS-----PSLDVLITLLSLGS 331
V+ F PV + + +++ +Y P P +V IT LSL
Sbjct: 360 VERSSSAFTKKPVDLHTVWANSIILSADVNHLYNPNFPEVYLKNHFPVPNVGIT-LSLDP 418
Query: 332 NGYKKLLKERKEMFSYLSNQIKKLSEAYNER--LLHTPHNP-----ISLAMTLKTLDEHR 384
NG+ + +++L+ ++ +N I ++ +T
Sbjct: 419 NGHMA-------TDVVGTALVEELARRNGDKVQYFQIKNNSRSGGTIGPSLASQTGARTI 471
Query: 385 DKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSH 425
D + QL SM R +G++ V LG F GF H
Sbjct: 472 DLGIAQL-SMHSIRAATGSKDVGLGVK------FFNGFFKH 505
>6H23-A nrPDB
Length = 229
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 30/203 (14%)
Query: 15 PAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIM--DSNNFLGNCGV 72
P V Q R+++ RLL E+ C D+S L + +L + +SN + +
Sbjct: 4 PIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMAI 63
Query: 73 GEREGRVASALVARRHYRFIHG------IGRSGDISAVQPKAAGSSLLNKITNSLVLDII 126
G V + L ++I +G++ + ++ A + + + NS ++
Sbjct: 64 NSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQ 123
Query: 127 KLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEP 186
G A + M L K Y I+ + ++S
Sbjct: 124 PSGGARGQATDIAIQAEEIMKLK-----------KQLYNIYAKHTKQS-----------L 161
Query: 187 VVIENVLEGDELRTDLKAVEAKV 209
VIE+ +E D + ++A E +
Sbjct: 162 QVIESAMERDRYMSPMEAQEFGI 184
>6BDY-A nrPDB
Length = 333
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 169 RIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFA 228
ID F + AG P ++E+ + G E + K + +L + L F
Sbjct: 50 YIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFP 109
Query: 229 P-RVPDRLEELAVICANYDIPHIVNNAYGVQ--------SSKCM 263
RV D +E I + H++N ++ ++ ++ C+
Sbjct: 110 ANRVGDDIE----IYRDETRTHVINVSHHLRQQTEKTGFANYCL 149
>3IV9-A nrPDB
Length = 579
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 169 RIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFA 228
ID F + AG P ++E+ + G E + K + +L + L F
Sbjct: 296 YIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFP 355
Query: 229 P-RVPDRLEELAVICANYDIPHIVNNAYGVQ--------SSKCM 263
RV D +E I + H++N ++ ++ ++ C+
Sbjct: 356 ANRVGDDIE----IYRDETRTHVINVSHHLRQQTEKTGFANYCL 395
>6EM4-A nrPDB
Length = 291
Score = 28.5 bits (62), Expect = 7.4, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 23 EARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGER 75
EAR+ H+ L L L K P NG T++ ++ L MD NF GNC G R
Sbjct: 90 EARK-HQDLY-LWLSK---PPNG---PTIKFYIQNLHTMDELNFTGNCLKGSR 134
>1TG6-A nrPDB
Length = 277
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 30/203 (14%)
Query: 15 PAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIM--DSNNFLGNCGV 72
P V Q R+++ RLL E+ C D+S L + +L + +SN + +
Sbjct: 60 PIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYI 119
Query: 73 GEREGRVASALVARRHYRFIHG------IGRSGDISAVQPKAAGSSLLNKITNSLVLDII 126
G V + L ++I +G++ + ++ A + + + NS ++
Sbjct: 120 NSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQ 179
Query: 127 KLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEP 186
G A + M L K Y I+ + ++S
Sbjct: 180 PSGGARGQATDIAIQAEEIMKLK-----------KQLYNIYAKHTKQS-----------L 217
Query: 187 VVIENVLEGDELRTDLKAVEAKV 209
VIE+ +E D + ++A E +
Sbjct: 218 QVIESAMERDRYMSPMEAQEFGI 240
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.314 0.133 0.360
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,012,224
Number of Sequences: 36641
Number of extensions: 694551
Number of successful extensions: 2035
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2000
Number of HSP's gapped (non-prelim): 48
length of query: 501
length of database: 10,336,785
effective HSP length: 101
effective length of query: 400
effective length of database: 6,636,044
effective search space: 2654417600
effective search space used: 2654417600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 61 (28.1 bits)