BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q9D964
         (423 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2JDX-A nrPDB                                                          756   0.0  
5WPI-A nrPDB                                                          322   2e-88
1BWD-A nrPDB                                                          221   6e-58
5E58-A nrPDB                                                           31   1.2  
3WO8-A nrPDB                                                           31   1.3  
5HY3-A nrPDB                                                           30   2.7  
3RMJ-A nrPDB                                                           29   4.5  
6D00-1 nrPDB                                                           28   7.9  
4RV4-A nrPDB                                                           28   8.1  

>2JDX-A nrPDB
          Length = 385

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/386 (95%), Positives = 379/386 (98%), Gaps = 1/386 (0%)

Query: 38  STQAATASSRNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKA 97
           STQAATASSRNSCAA+DKAT PLPKDCPVSSYNEWDPLEEVIVGRAENACVPPFT+EVKA
Sbjct: 1   STQAATASSRNSCAADDKATEPLPKDCPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKA 60

Query: 98  NTYEKYWPFYQKNGGLYFPKDHLKKAVAEVEEMCNILSMEGVTVRRPDPIDWSLKYKTPD 157
           NTYEKYWPFYQK GG YFPKDHLKKAVAE+EEMCNIL  EGVTVRRPDPIDWSLKYKTPD
Sbjct: 61  NTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPD 120

Query: 158 FESTGLYSAMPRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPT 217
           FESTGLYSAMPRDIL+VVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPT
Sbjct: 121 FESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPT 180

Query: 218 MADELYDQNYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLG 277
           MADELY+Q+YPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLG
Sbjct: 181 MADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLG 240

Query: 278 IEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTI 337
           IEWMRRHLAPDYRVHIISFKDPNP HIDATFNIIGPG+VLSNPDRPCHQIDLFKKAGWTI
Sbjct: 241 IEWMRRHLAPDYRVHIISFKDPNP-HIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTI 299

Query: 338 VTPPTPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRN 397
           +TPPTP+IPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGI+TIKVNIRN
Sbjct: 300 ITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRN 359

Query: 398 ANSLGGGFHCWTCDVRRRGTLQSYFD 423
           ANSLGGGFHCWTCDVRRRGTLQSY D
Sbjct: 360 ANSLGGGFHCWTCDVRRRGTLQSYLD 385


>5WPI-A nrPDB
          Length = 387

 Score =  322 bits (824), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/359 (46%), Positives = 220/359 (61%), Gaps = 10/359 (2%)

Query: 64  CPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKA 123
            PV  Y EWDPLEEVIVG  ++  VP +   +KA   E+   F+Q   G  FP++ L KA
Sbjct: 37  SPVEVYTEWDPLEEVIVGIMDDIRVPDWDKSLKAIIPEENHDFFQTYSGKRFPEELLIKA 96

Query: 124 VAEVEEMCNILSMEGVTVRRPDPIDWSLKYKTPDFESTG-LYSAMPRDILMVVGNEIIEA 182
             EVE +  IL  EG+ V+RP+  +      TP F + G  YSAMPRD L  +G +IIE 
Sbjct: 97  RQEVETLAQILQAEGIRVKRPNESNHHQPIMTPHFTTGGTFYSAMPRDCLFAIGKKIIEV 156

Query: 183 PMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAAQG 242
           PM+WRSR+FE  A+R I+ DYF RGA+W  APKP ++D+++++++     E      +  
Sbjct: 157 PMSWRSRYFETFAFRDILNDYFTRGAEWIAAPKPMLSDDVWEKDF---DFEQEFPFRS-- 211

Query: 243 KFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPM 302
             + TE EP FDAADF++ GRDI  QRS  TN  GIEW+RR L PDY +HI  F +P PM
Sbjct: 212 --IITEVEPLFDAADFMKMGRDIIGQRSHATNKKGIEWLRRTLGPDYHIHIYEFDEPAPM 269

Query: 303 HIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPTPVIPDDHPLWMSSKWLSMNV 362
           HID T   + PG VL N        D+FK   W I+ PP   +PDDHPL+MSS W+  NV
Sbjct: 270 HIDTTILPLAPGRVLINKGWVPQIPDIFKD--WEILNPPASNLPDDHPLYMSSNWIHTNV 327

Query: 363 LMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSY 421
           LMLDEK V+V+ +E  +   F + G  TI    ++  + GG FHC T DV+R G+L+SY
Sbjct: 328 LMLDEKTVIVEEDEEALISAFRQWGFKTILCPFKHFQTFGGSFHCATLDVKRSGSLKSY 386


>1BWD-A nrPDB
          Length = 348

 Score =  221 bits (562), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 193/361 (53%), Gaps = 23/361 (6%)

Query: 66  VSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKAVA 125
           VS +NEWDPLEEVIVG A  A VP     V A  Y   +   ++     +P   LK+   
Sbjct: 4   VSVHNEWDPLEEVIVGTAVGARVPTADRSVFAVEYAGDYESQEQIPSGAYPDRVLKETEE 63

Query: 126 EVEEMCNILSMEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMA 185
           E+  +   L+  GVTVRRP P D S   KTPD+E+ G +   PRD L+ VG  IIE PMA
Sbjct: 64  ELHVLAAELTKLGVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQTIIETPMA 123

Query: 186 WRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAAQGKFV 245
            RSRF E  AY+ ++ +YF  G++W +APKP + D+ Y    P             G+ +
Sbjct: 124 LRSRFLESLAYKDLLLEYFASGSRWLSAPKPRLTDDSYAPQAP------------AGERL 171

Query: 246 TTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHID 305
           T E EP FDAA+ +R G D+    S   N LG +W++  +   Y VH    K     H+D
Sbjct: 172 TDE-EPVFDAANVLRFGTDLLYLVSDSGNELGAKWLQSAVGDTYTVHPCR-KLYASTHVD 229

Query: 306 ATFNIIGPGLVLSNPDRPCHQI--DLFKKAGWTIVTPPTPV---IPDDHPLWMSSKWLSM 360
           +T   + PGLVL+NP R   +   D  +   W  +T P  V      D P    S W+ M
Sbjct: 230 STIVPLRPGLVLTNPSRVNDENMPDFLRS--WENITCPELVDIGFTGDKP--HCSVWIGM 285

Query: 361 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQS 420
           N+L++     +VD  +  + ++ EK G++ + + + ++ +LGGGFHC T DVRR G L++
Sbjct: 286 NLLVVRPDLAVVDRRQTALIRLLEKHGMNVLPLQLTHSRTLGGGFHCATLDVRRTGALET 345

Query: 421 Y 421
           Y
Sbjct: 346 Y 346


>5E58-A nrPDB
          Length = 493

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 168 PRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIK----DY---FHRGAKWTTAPKPTMAD 220
           PR ++M+ G E I   +  ++  F  R   ++IK    DY   F  G +W    + ++A 
Sbjct: 72  PRPVVMLYGTEAIREALVDQAEAFSGRGTIAVIKPVIGDYGMIFSNGERWKVLRRFSLA- 130

Query: 221 ELYDQNYPIHSVEDRHKLAAQ 241
            + D      SVEDR +  AQ
Sbjct: 131 TMRDFGMGKRSVEDRIQEEAQ 151


>3WO8-A nrPDB
          Length = 478

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 23/48 (47%)

Query: 77  EVIVGRAENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKAV 124
           E +V   E+  V    VE    T EKY  F +KN G+ F  D   KAV
Sbjct: 297 ETLVKLLEDGKVQKDKVERSIRTVEKYLAFAKKNSGVGFLADVSMKAV 344


>5HY3-A nrPDB
          Length = 346

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 109 KNGGLYFPKDHLKKAVAEVEEMCNILSMEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMP 168
           K G + F   +L+ A    + MC+IL+M+ +  ++    +  +K +T + E   L+S +P
Sbjct: 148 KRGSIQFQGKYLQIASLINDFMCSILNMKEIVEQKNKEFNVDIKKETIESE---LHSKLP 204

Query: 169 RDI 171
           + I
Sbjct: 205 KSI 207


>3RMJ-A nrPDB
          Length = 370

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 117 KDHLKKAVAEVEEMCN-ILSMEGVTVRRPDPIDWSLKYKTPDF 158
           +D L+  +  + E+C  ++     T+  PD + +S+ YKT +F
Sbjct: 149 EDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEF 191


>6D00-1 nrPDB
          Length = 883

 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 108 QKNGGLYFPKDHLKKAVAEVEEMCNILSMEGVT 140
           +K   LY  +DHL  A+A++  M  +L   GVT
Sbjct: 100 KKQRDLYIAQDHLILALADLPSMAQVLKEGGVT 132


>4RV4-A nrPDB
          Length = 234

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 113 LYFPKDHLKKAVAEVEEMCNILSMEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPR 169
           LYF  + +KK +A      ++L +  V ++  DP  WS   K+P +    L  + P+
Sbjct: 18  LYFQSNAMKKEIAS-----HLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPK 69


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2JDX-A nrPDB                                                          673   0.0  
5WPI-A nrPDB                                                          563   e-161
1BWD-A nrPDB                                                          505   e-143

Sequences not found previously or not previously below threshold:

6HIV-DE nrPDB                                                          35   0.063
5MYJ-AB nrPDB                                                          34   0.18 
1RXX-A nrPDB                                                           32   0.45 
6NUW-E nrPDB                                                           32   0.48 
5X7M-A nrPDB                                                           32   0.73 
1EAK-A nrPDB                                                           31   0.80 
1CK7-A nrPDB                                                           31   0.91 
3WF0-A nrPDB                                                           31   1.1  
4M2J-A nrPDB                                                           31   1.2  
5F9Y-A nrPDB                                                           30   1.6  
4EQ5-A nrPDB                                                           30   1.7  
3S6F-A nrPDB                                                           30   1.9  
2D3Y-A nrPDB                                                           30   2.3  
5U4N-A nrPDB                                                           30   2.4  
2B5O-A nrPDB                                                           30   2.5  
6D00-1 nrPDB                                                           30   2.7  
4ANI-C nrPDB                                                           30   2.8  
6DGE-A nrPDB                                                           29   3.4  
2CI6-A nrPDB                                                           29   3.5  
5CE6-A nrPDB                                                           29   4.6  
1YKN-B nrPDB                                                           29   4.6  


CONVERGED!
>2JDX-A nrPDB
          Length = 385

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/386 (95%), Positives = 379/386 (98%), Gaps = 1/386 (0%)

Query: 38  STQAATASSRNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKA 97
           STQAATASSRNSCAA+DKAT PLPKDCPVSSYNEWDPLEEVIVGRAENACVPPFT+EVKA
Sbjct: 1   STQAATASSRNSCAADDKATEPLPKDCPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKA 60

Query: 98  NTYEKYWPFYQKNGGLYFPKDHLKKAVAEVEEMCNILSMEGVTVRRPDPIDWSLKYKTPD 157
           NTYEKYWPFYQK GG YFPKDHLKKAVAE+EEMCNIL  EGVTVRRPDPIDWSLKYKTPD
Sbjct: 61  NTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPD 120

Query: 158 FESTGLYSAMPRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPT 217
           FESTGLYSAMPRDIL+VVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPT
Sbjct: 121 FESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPT 180

Query: 218 MADELYDQNYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLG 277
           MADELY+Q+YPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLG
Sbjct: 181 MADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLG 240

Query: 278 IEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTI 337
           IEWMRRHLAPDYRVHIISFKDPNP HIDATFNIIGPG+VLSNPDRPCHQIDLFKKAGWTI
Sbjct: 241 IEWMRRHLAPDYRVHIISFKDPNP-HIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTI 299

Query: 338 VTPPTPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRN 397
           +TPPTP+IPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGI+TIKVNIRN
Sbjct: 300 ITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRN 359

Query: 398 ANSLGGGFHCWTCDVRRRGTLQSYFD 423
           ANSLGGGFHCWTCDVRRRGTLQSY D
Sbjct: 360 ANSLGGGFHCWTCDVRRRGTLQSYLD 385


>5WPI-A nrPDB
          Length = 387

 Score =  563 bits (1450), Expect = e-161,   Method: Composition-based stats.
 Identities = 166/360 (46%), Positives = 220/360 (61%), Gaps = 10/360 (2%)

Query: 64  CPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKA 123
            PV  Y EWDPLEEVIVG  ++  VP +   +KA   E+   F+Q   G  FP++ L KA
Sbjct: 37  SPVEVYTEWDPLEEVIVGIMDDIRVPDWDKSLKAIIPEENHDFFQTYSGKRFPEELLIKA 96

Query: 124 VAEVEEMCNILSMEGVTVRRPDPIDWSLKYKTPDFESTG-LYSAMPRDILMVVGNEIIEA 182
             EVE +  IL  EG+ V+RP+  +      TP F + G  YSAMPRD L  +G +IIE 
Sbjct: 97  RQEVETLAQILQAEGIRVKRPNESNHHQPIMTPHFTTGGTFYSAMPRDCLFAIGKKIIEV 156

Query: 183 PMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAAQG 242
           PM+WRSR+FE  A+R I+ DYF RGA+W  APKP ++D+++++++     E      +  
Sbjct: 157 PMSWRSRYFETFAFRDILNDYFTRGAEWIAAPKPMLSDDVWEKDF---DFEQEFPFRS-- 211

Query: 243 KFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPM 302
             + TE EP FDAADF++ GRDI  QRS  TN  GIEW+RR L PDY +HI  F +P PM
Sbjct: 212 --IITEVEPLFDAADFMKMGRDIIGQRSHATNKKGIEWLRRTLGPDYHIHIYEFDEPAPM 269

Query: 303 HIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPTPVIPDDHPLWMSSKWLSMNV 362
           HID T   + PG VL N        D+FK   W I+ PP   +PDDHPL+MSS W+  NV
Sbjct: 270 HIDTTILPLAPGRVLINKGWVPQIPDIFKD--WEILNPPASNLPDDHPLYMSSNWIHTNV 327

Query: 363 LMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYF 422
           LMLDEK V+V+ +E  +   F + G  TI    ++  + GG FHC T DV+R G+L+SY 
Sbjct: 328 LMLDEKTVIVEEDEEALISAFRQWGFKTILCPFKHFQTFGGSFHCATLDVKRSGSLKSYI 387


>1BWD-A nrPDB
          Length = 348

 Score =  505 bits (1300), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/361 (37%), Positives = 193/361 (53%), Gaps = 23/361 (6%)

Query: 66  VSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKAVA 125
           VS +NEWDPLEEVIVG A  A VP     V A  Y   +   ++     +P   LK+   
Sbjct: 4   VSVHNEWDPLEEVIVGTAVGARVPTADRSVFAVEYAGDYESQEQIPSGAYPDRVLKETEE 63

Query: 126 EVEEMCNILSMEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMA 185
           E+  +   L+  GVTVRRP P D S   KTPD+E+ G +   PRD L+ VG  IIE PMA
Sbjct: 64  ELHVLAAELTKLGVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQTIIETPMA 123

Query: 186 WRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAAQGKFV 245
            RSRF E  AY+ ++ +YF  G++W +APKP + D+ Y    P             G+ +
Sbjct: 124 LRSRFLESLAYKDLLLEYFASGSRWLSAPKPRLTDDSYAPQAP------------AGERL 171

Query: 246 TTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHID 305
           T E EP FDAA+ +R G D+    S   N LG +W++  +   Y VH    K     H+D
Sbjct: 172 TDE-EPVFDAANVLRFGTDLLYLVSDSGNELGAKWLQSAVGDTYTVHPCR-KLYASTHVD 229

Query: 306 ATFNIIGPGLVLSNPDRPCHQ--IDLFKKAGWTIVTPPTPV---IPDDHPLWMSSKWLSM 360
           +T   + PGLVL+NP R   +   D  +   W  +T P  V      D P    S W+ M
Sbjct: 230 STIVPLRPGLVLTNPSRVNDENMPDFLRS--WENITCPELVDIGFTGDKP--HCSVWIGM 285

Query: 361 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQS 420
           N+L++     +VD  +  + ++ EK G++ + + + ++ +LGGGFHC T DVRR G L++
Sbjct: 286 NLLVVRPDLAVVDRRQTALIRLLEKHGMNVLPLQLTHSRTLGGGFHCATLDVRRTGALET 345

Query: 421 Y 421
           Y
Sbjct: 346 Y 346


>6HIV-DE nrPDB
          Length = 746

 Score = 35.1 bits (79), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 9/119 (7%)

Query: 305 DATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPTPVIPDDHP----LWMSSKWLSM 360
           D T    G G V+ N D   +     + +      PP  V+P  +P    LW   + L +
Sbjct: 360 DPTLPPGGEGSVIGNSDNXKNSEKXSEGSRGRPARPP--VLPGAYPPIDMLWRCEENLPL 417

Query: 361 -NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTL 418
             VL+  E  ++V  N  P  K     G  T   +  ++ +L  G         +RG L
Sbjct: 418 LKVLLFGEFNLIVSEN--PFVKFPSAHGFLTRPYSTDSSRTLADGMSLANVMAEKRGHL 474


>5MYJ-AB nrPDB
          Length = 255

 Score = 33.5 bits (75), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 18  HYIGSR-LGGSLTGWVQRTFQSTQAATASSRNSCAAEDKAT-HPLPKDCPVSSYNEWDPL 75
           +Y+  R LGG LT W      + Q      +     E++ T   LPK   V    E + L
Sbjct: 90  YYVNHRWLGGMLTNW-----NTIQTRVTRLKEINKMEEEGTFEVLPKKEVVLLNKERERL 144

Query: 76  EEVIVGRAENACVPP 90
           E+ I G A+   +P 
Sbjct: 145 EKFIGGIADMPRIPD 159


>1RXX-A nrPDB
          Length = 421

 Score = 32.0 bits (71), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 359 SMNVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRR 414
             NV+ L+   V+          +  K G+  I ++        GG HC TC + R
Sbjct: 361 GNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIVR 416


>6NUW-E nrPDB
          Length = 461

 Score = 32.0 bits (71), Expect = 0.48,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 15/140 (10%)

Query: 278 IEWMRRHLAPDYRVHIISFKDPN-PMHI------DATFNIIG-PGLVLSNPDRPCHQIDL 329
           IE ++  LA  Y  H+  FK P+ P+ I      D+    +  P +   N +   +++D 
Sbjct: 132 IENLQTDLAKIYHCHVYMFKHPSLPVLITRIQLFDSNNLFLSTPNIGSINKESLYNKLDK 191

Query: 330 FKKAGWTIVTPPTPVIPDDHP-LWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEK--- 385
           F+        P     P + P ++ S        L+L      +   E  I K  +K   
Sbjct: 192 FQGKPLISRRPYYVAFPLNSPIIFHSVDKDIYARLVLQSISRTISERETIIFKPVQKIPV 251

Query: 386 ---LGISTIKVNIRNANSLG 402
                I T+    R A S+G
Sbjct: 252 KSIHNIMTLLGPSRFAESMG 271


>5X7M-A nrPDB
          Length = 453

 Score = 31.6 bits (70), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 18/90 (20%)

Query: 252 CFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDP------------ 299
            FDA  F  A   +    SQ+ + LG+      L   Y +   + ++P            
Sbjct: 221 VFDAEGFKLAAERVLGLYSQIHSELGVALPELDLGGGYGIAYTAAEEPLNVAEVASDLLT 280

Query: 300 ------NPMHIDATFNIIGPGLVLSNPDRP 323
                   + IDA   ++ PG  ++ P   
Sbjct: 281 AVGKMAAELGIDAPTVLVEPGRAIAGPSTV 310


>1EAK-A nrPDB
          Length = 421

 Score = 31.2 bits (69), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 155 TPDFESTGLYSAMPRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAP 214
           T +FE  G Y   P + L  +G      P  +  RF +  +Y S   +    G +W    
Sbjct: 231 TYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRF-QGTSYDSCTTEGRTDGYRWCGTT 289

Query: 215 KPTMADELY 223
           +    D+ Y
Sbjct: 290 EDYDRDKKY 298


>1CK7-A nrPDB
          Length = 631

 Score = 31.2 bits (69), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 155 TPDFESTGLYSAMPRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAP 214
           T +FE  G Y   P + L  +G      P  +  RF +  +Y S   +    G +W    
Sbjct: 233 TYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRF-QGTSYDSCTTEGRTDGYRWCGTT 291

Query: 215 KPTMADELY 223
           +    D+ Y
Sbjct: 292 EDYDRDKKY 300


>3WF0-A nrPDB
          Length = 678

 Score = 30.8 bits (68), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 45/174 (25%)

Query: 79  IVGRAENACVPPF---TVEVK-------ANTYEKYWPFYQKNGGLY-FPKDHLKKAVAEV 127
           I G    + VP F      +K       A      W F++   G Y F +DH      +V
Sbjct: 52  ISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDH------DV 105

Query: 128 EEMCNILSMEGVTV-RRPDPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMAW 186
           E    +    G+ V  RP P      Y   ++E  GL + +                   
Sbjct: 106 EYFLRLAHELGLLVILRPGP------YICAEWEMGGLPAWLLEK---------------- 143

Query: 187 RSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAA 240
                E    RS   DY     KW     P M   LY    P+ +V+  ++  +
Sbjct: 144 -----ESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGS 192


>4M2J-A nrPDB
          Length = 406

 Score = 30.8 bits (68), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 6/26 (23%)

Query: 279 EWMRRHLAPDYR------VHIISFKD 298
           EW RRHL PD        VH  SF +
Sbjct: 36  EWYRRHLGPDIHDISSSGVHPYSFAE 61


>5F9Y-A nrPDB
          Length = 511

 Score = 30.4 bits (67), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 125 AEVEEMCN----ILSMEGVTVRRPDPIDWSLKYKTPDFESTGL---YSAMPRDI 171
            E +++CN    IL   GV V+  D  +++  +K   +E  G+   +   PRDI
Sbjct: 317 EEQKKICNEVECILKKAGVRVKIDDRSNYTPGWKYNHWEVKGVCLRFEVGPRDI 370


>4EQ5-A nrPDB
          Length = 571

 Score = 30.1 bits (66), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 23/176 (13%)

Query: 84  ENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKAVAEVEEMCNILSMEGVTVR- 142
           + A V       K   Y +       N     P+  +++    ++    I+  E V V  
Sbjct: 263 DGARVQVHKNGNKVLIYSRRLE----NVTKSIPE-VVERVKEALKPEKVIVEGELVAVEE 317

Query: 143 --RPDPIDWSLKYKTPDFESTGLYSAMPR-----DILMVVGNEIIEAPMAWRSRFFEYRA 195
             RP P  + L+     +    +   +P      DIL V G  +I+ P   R +  E   
Sbjct: 318 TGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVDGQNMIDTPFMERRKVLESVV 377

Query: 196 YRSIIKDYFHRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAAQGKFVTTEFEP 251
                        +W  + +  +     +     H   D        K + + +EP
Sbjct: 378 ----------NSNEWIKSAENLITKSPEEAEAFYHKALDLGHEGLMAKRLDSTYEP 423


>3S6F-A nrPDB
          Length = 145

 Score = 30.1 bits (66), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 22/112 (19%)

Query: 91  FTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKAVAEVEEMCNILSMEGVTVRRPDPIDWS 150
           F   ++  T  +   F++       P           E +  IL    V V         
Sbjct: 12  FQTTLEGVTPAQLGGFFEGWPNPPTP-----------ETLWRILDRAAVFV--------- 51

Query: 151 LKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIKD 202
              +TPD +  G  +A+  D ++     ++E    WRS        R ++ +
Sbjct: 52  -LARTPDGQVIGFVNAL-SDGILAASIPLLEVQAGWRSLGLGSELMRRVLTE 101


>2D3Y-A nrPDB
          Length = 219

 Score = 29.7 bits (65), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 341 PTPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNAN- 399
           P    P    L   ++W  + + +L E RV V    + ++ +    G+       R+   
Sbjct: 117 PPKNKPTPEELRACARWTEVELGLLPEVRVYVALGRIALEALLAHFGLRKSAHPFRHGAH 176

Query: 400 -SLGGGFH-CWTCDVRRRGT 417
             L GG H   +  V R+ T
Sbjct: 177 YPLPGGRHLLASYHVSRQNT 196


>5U4N-A nrPDB
          Length = 362

 Score = 29.7 bits (65), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 26/58 (44%)

Query: 74  PLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKAVAEVEEMC 131
           P+EE++ G            +++  +      +  +N   + P+ +L K +  ++++C
Sbjct: 267 PVEEIVEGIKHGVRKVNIDTDLRLASTGAVRRYLAENPSDFDPRKYLGKTIEAMKQIC 324


>2B5O-A nrPDB
          Length = 402

 Score = 29.7 bits (65), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 189 RFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAAQGKFVTTE 248
           R F +R ++   +DY  +G  W     P  A+ LY  ++   + E+         +  + 
Sbjct: 266 RAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLT--YAISR 323

Query: 249 FEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATF 308
            +   D        R      S+  + L  E +++   P+  V++   K   P  ID TF
Sbjct: 324 EQKTADGGKVYVQSR-----VSEYADEL-FEMIQK---PNTHVYMCGLKGMQPP-IDETF 373


>6D00-1 nrPDB
          Length = 883

 Score = 29.7 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 104 WPFYQKNGGLYFPKDHLKKAVAEVEEMCNILSMEGVTVR 142
               +K   LY  +DHL  A+A++  M  +L   GVT +
Sbjct: 96  HEHMKKQRDLYIAQDHLILALADLPSMAQVLKEGGVTKK 134


>4ANI-C nrPDB
          Length = 509

 Score = 29.7 bits (65), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 266 FAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFN 309
            A+R  +TN   I  ++RH+  DY+V I   K   P  I A   
Sbjct: 52  VAKRQAITNPNTIISIKRHMGTDYKVEI-EGKQYTPQEISAIIL 94


>6DGE-A nrPDB
          Length = 308

 Score = 29.3 bits (64), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 253 FDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIG 312
            D  D +  GR+ F   S+ TN  G E +      DY V  +   D   +H+ +  ++ G
Sbjct: 149 LDGGDVLFTGREFFVGLSKRTNQRGAEILADTF-KDYAVSTVPVAD--GLHLKSFCSMAG 205

Query: 313 PGLVLSNPDRPCHQ 326
           P L+         +
Sbjct: 206 PNLIAIGSSESAQK 219


>2CI6-A nrPDB
          Length = 284

 Score = 29.3 bits (64), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 253 FDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIG 312
            D  D +  GR+ F   S+ TN  G E +      DY V  +   D   +H+ +  ++ G
Sbjct: 125 LDGGDVLFTGREFFVGLSKRTNQRGAEILADTF-KDYAVSTVPVVD--ALHLKSFCSMAG 181

Query: 313 PGLVLSNPDRPCHQ 326
           P L+         +
Sbjct: 182 PNLIAIGSSESAQK 195


>5CE6-A nrPDB
          Length = 480

 Score = 28.9 bits (63), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 69  YNEWDPLEEVIVGRAENACV--PPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKAVAE 126
           Y+ WD     + G ++   V  PP + +++   Y K    +    G  FP+  +     +
Sbjct: 37  YSHWDDRRTDLWGSSDAIAVACPPPSEDLR---YLKSTALFLWLLGFEFPETIMVFTKKQ 93

Query: 127 VEEMCNILSMEGV-TVRRP 144
           +  +C+      + +V++P
Sbjct: 94  IHVLCSQKKASILESVKKP 112


>1YKN-B nrPDB
          Length = 238

 Score = 28.9 bits (63), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 147 IDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEA 182
            +W  K  TPD++++   S  PR  L+ +   I E 
Sbjct: 13  RNWHPKALTPDYKTSIARS--PRQALVSIPQSISET 46


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.311    0.131    0.384 

Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,653,029
Number of Sequences: 36641
Number of extensions: 732848
Number of successful extensions: 1853
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1822
Number of HSP's gapped (non-prelim): 35
length of query: 423
length of database: 10,336,785
effective HSP length: 100
effective length of query: 323
effective length of database: 6,672,685
effective search space: 2155277255
effective search space used: 2155277255
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 60 (27.7 bits)