BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q9BV20
(369 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4LDQ-A nrPDB 745 0.0
2A0U-A nrPDB 289 1e-78
1T9K-A nrPDB 242 2e-64
1T5O-A nrPDB 221 4e-58
6A34-A nrPDB 221 4e-58
2YRF-A nrPDB 217 5e-57
3A9C-A nrPDB 118 5e-27
5YG5-A nrPDB 111 5e-25
1VB5-A nrPDB 76 2e-14
5B04-A nrPDB 72 3e-13
6O85-G nrPDB 67 1e-11
6O85-E nrPDB 66 2e-11
6I3M-A nrPDB 59 4e-09
6O81-C nrPDB 59 5e-09
6JLZ-C nrPDB 49 3e-06
5B04-G nrPDB 38 0.006
4Q60-A nrPDB 32 0.31
6I7T-C nrPDB 32 0.50
4J9X-A nrPDB 30 1.1
6I3M-E nrPDB 30 1.4
3RJM-A nrPDB 30 2.3
1XET-A nrPDB 29 3.1
6IXF-A nrPDB 29 4.0
3A5R-A nrPDB 28 4.8
4JCI-A nrPDB 28 5.2
3TSY-A nrPDB 28 5.4
>4LDQ-A nrPDB
Length = 369
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA
Sbjct: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
Query: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA
Sbjct: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
Query: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT
Sbjct: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
Query: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV
Sbjct: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
Query: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER
Sbjct: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
Query: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR 360
PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR
Sbjct: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR 360
Query: 361 DGTLDGPQM 369
DGTLDGPQM
Sbjct: 361 DGTLDGPQM 369
>2A0U-A nrPDB
Length = 383
Score = 289 bits (740), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 164/353 (46%), Positives = 221/353 (62%), Gaps = 10/353 (2%)
Query: 2 TLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAV 61
TLE+I+Y+ GSL++LDQ LP ++ ++ V +V W AI+ M+VRGAPAIA+ L +AV
Sbjct: 17 TLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAV 76
Query: 62 ELQAGAGGPGLAA---LVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATE 118
Q A L + + F+ F++T+RPTAVN+ RDL + + A E
Sbjct: 77 ATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAE 136
Query: 119 EAVRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSG-GKVTVLTHCNTGALATAG 177
V + + E + D+ N I GA H+L G KV++LT CNTGALAT+
Sbjct: 137 --VAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSR 194
Query: 178 YGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAH 237
YGTALGV+R L G+LE + ETRP+NQGARLT +E V E IP TLI D ++ M +
Sbjct: 195 YGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLN 254
Query: 238 RGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIII 297
R + AVVVGADR+ NGDTANK+GTY LA+ AK HG+ YVAAP+++ D++ +G + I
Sbjct: 255 RKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEI 314
Query: 298 EERPGQELTD--VNGVRIAA--PGIGVWNPAFDVTPHDLITGGIITELGVFAP 346
EER E+T V R+ A P + +WNP FD+TP +LITGGIITE GV AP
Sbjct: 315 EEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAP 367
>1T9K-A nrPDB
Length = 347
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/346 (43%), Positives = 198/346 (57%), Gaps = 17/346 (4%)
Query: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
+ + + +S SL++LDQ LP Y + + AI+ M VRGAPAI +
Sbjct: 5 LKTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYV 64
Query: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
+ L+ G +L +++ L RPTAVN+ A + V A+RE E
Sbjct: 65 LGLRDYKTG----SLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENADRENLFEIL 120
Query: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
E + M +D+ N++IG GA+ + + T+LTHCN GALAT YGT
Sbjct: 121 ENEAL-----KMAYEDIEVNKAIGKNGAQLIKD-------GSTILTHCNAGALATVDYGT 168
Query: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
ALGVIR+ G+ F ETRPY QGARLTA+EL+ + I +ITD+M M +
Sbjct: 169 ALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLI 228
Query: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
AVVVGADR+ NGDTANK+GTY LA++AK + IPFYVAAP S+ D + +G+EI IEER
Sbjct: 229 DAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEER 288
Query: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAP 346
+E+T G RIA G+ V NPAFDVT + LIT IITE GV P
Sbjct: 289 RPEEVTHCGGNRIAPEGVKVLNPAFDVTENTLIT-AIITEKGVIRP 333
>1T5O-A nrPDB
Length = 351
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 199/346 (57%), Gaps = 17/346 (4%)
Query: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
M+L +I + G L+++DQ LP++ +V + +AI+ + VRGAPA+ G +A
Sbjct: 1 MSLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIA 59
Query: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
+ + + L ++ FL + RPTAVN+ + A + G + E
Sbjct: 60 LAAREREFA-DVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALK-----GESVEE 113
Query: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
V+E + E + E+D+ NR +G+ GA LLE G V VLT+CN G LAT +GT
Sbjct: 114 VKELALREAEKLAEEDVERNRKMGEYGA-ELLE-----DGDV-VLTYCNAGRLATVDWGT 166
Query: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
ALGV+RS G+ ETRP NQG+RLT +EL+ + I TLITDSMV M V
Sbjct: 167 ALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMV 226
Query: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
V+VGADR+V + NK+GTY +++VAKHH IPFYVAAP ++ D T K+++IEER
Sbjct: 227 DKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEER 284
Query: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAP 346
P +EL +IA + V+NPAFD TP + +T +ITE GV P
Sbjct: 285 PREELIFCGKRQIAPLNVKVYNPAFDPTPLENVT-ALITEYGVIYP 329
>6A34-A nrPDB
Length = 364
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 193/341 (56%), Gaps = 14/341 (4%)
Query: 6 IRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQA 65
+ Y S+ +++Q LLPK+ + E V + EAI+ M VRGAPAI LA+ +
Sbjct: 17 VEYKNKSVYMINQRLLPKEFKVEKFSKVEEVAEAIKNMTVRGAPAIGAAAGFGLALYAET 76
Query: 66 GAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEAVRERV 125
L F + L RPTAVN+ A + + E E +E ++ +
Sbjct: 77 SKAKTKEEFLDGFEK-AYEILKNTRPTAVNLFWALNRIKKLV--EEHSEDPLDE-IKRLI 132
Query: 126 ICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTALGVI 185
+ + ++D+ N +G GA V P G +LTHCN G+LAT GT V+
Sbjct: 133 VQEAYKIADEDVEANLRMGHYGAE-----VLPEGN---ILTHCNAGSLATVHLGTVGSVV 184
Query: 186 RSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVV 245
R +H G L+ + ETRP QGARL+A+E Y+ + LI D+ A M V A++V
Sbjct: 185 RVMHKDGSLKLLWLDETRPVLQGARLSAWEYSYDGLNVKLIADNAAAFVMQQGFVDAIIV 244
Query: 246 GADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQEL 305
GADR+VANGD ANK+GTY LA++A+ HGIPF+ AP SS D+ L++GK+I IEER +E+
Sbjct: 245 GADRIVANGDFANKIGTYMLAVLAREHGIPFFAVAPLSSIDMELKSGKDIPIEERSPEEV 304
Query: 306 TDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAP 346
G RIA P + V+NPAFDVTPH +T GIIT+ GV P
Sbjct: 305 LTCGGCRIA-PDVPVYNPAFDVTPHKYLT-GIITDRGVVWP 343
>2YRF-A nrPDB
Length = 374
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 195/345 (56%), Gaps = 24/345 (6%)
Query: 5 AIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQ 64
++ + ++ IL+Q LP ++ Y + + ++AI +KVRGAPAI + LA+
Sbjct: 31 SVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLAL--- 87
Query: 65 AGAGGPGLAALVAFVR---DKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEAV 121
A + F R D +L ++RPTA+N++ A L+ A V
Sbjct: 88 -AAKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENAISVNEAKTNLV 146
Query: 122 RERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTA 181
E + ED R IG A L ++ G ++ +T CN G++AT+ YGTA
Sbjct: 147 HEAIQIQVEDE-----ETCRLIGQ-NALQLFKK----GDRI--MTICNAGSIATSRYGTA 194
Query: 182 LG--VIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRG 239
L + LG H + ETRP QG+RLTA+EL+ I TLITDSM A M +
Sbjct: 195 LAPFYLAKQKDLGL--HIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQ 252
Query: 240 VSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEE 299
+SAV+VGADR+ NGDTANK+GTY LAI+A IPF+VAAP S+ D +++ G +I IEE
Sbjct: 253 ISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEE 312
Query: 300 RPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVF 344
R +E+ ++GVR A + V+NPAFD+TPHDLI+ GIITE G+
Sbjct: 313 RDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLIS-GIITEKGIM 356
>3A9C-A nrPDB
Length = 338
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 147/310 (47%), Gaps = 23/310 (7%)
Query: 38 EAIRAMKVRGAPAIALVGCLSLAVELQA-GAGGPGLAALVAFVRDKLSFLVTARPTAVNM 96
E I+ M++RGA IA +L +LQA + + ++ L RPTAV++
Sbjct: 28 EKIKNMEIRGAGKIARSAAYAL--QLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSL 85
Query: 97 ARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVA 156
A R + + A GA E +R +I ++ + + IG+ GA+ +
Sbjct: 86 PNALRYVMH-RGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRI----- 139
Query: 157 PSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFEL 216
G V ++THC++ A A+ V+++ G+ TETRP QG ++TA EL
Sbjct: 140 -EDGDV-IMTHCHSKA--------AISVMKTAWEQGKDIKVIVTETRPKWQG-KITAKEL 188
Query: 217 VYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPF 276
IP + DS AA + VV+GAD + NG NK+GT +A+ AK H +
Sbjct: 189 ASYGIPVIYVVDS--AARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWT 246
Query: 277 YVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGG 336
+AA + G+ + IE R E+ + ++ I VWNPAFDVTP + +
Sbjct: 247 MIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYV-DV 305
Query: 337 IITELGVFAP 346
IITE G+ P
Sbjct: 306 IITERGIIPP 315
>5YG5-A nrPDB
Length = 324
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 125/263 (47%), Gaps = 20/263 (7%)
Query: 84 SFLVTARPTAVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSI 143
L RPTAV++ A R + + A GA E +R I ++ + + I
Sbjct: 59 KILYNTRPTAVSLPNALRYVMH-RVKAAYLGGADLETLRFTAINSAKEFIYNSEKAIERI 117
Query: 144 GDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETR 203
G++GA+ + G + ++THC++ A A+ V++ G+ TETR
Sbjct: 118 GEIGAKRI------EDGDI-IMTHCHSKA--------AISVMKKAFEQGKNIKVIVTETR 162
Query: 204 PYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTY 263
P QG ++TA EL IP I DS AA + VV+GAD + ANG NK+GT
Sbjct: 163 PKWQG-KITAKELASYGIPVIYIVDS--AARHYMKMTDKVVMGADSITANGAVINKIGTS 219
Query: 264 QLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNP 323
+A+ AK H + +AA + G+ + IE R E+ +R I VWNP
Sbjct: 220 LIALTAKEHRVWVMIAAETYKFHPATMLGQLVEIEMRDPTEVIPEEELRTWPKNIEVWNP 279
Query: 324 AFDVTPHDLITGGIITELGVFAP 346
AFDVTP + I IITE G+ P
Sbjct: 280 AFDVTPPEYI-DVIITERGIIPP 301
>1VB5-A nrPDB
Length = 276
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 179 GTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHR 238
T L +IR+ + TE+ P +G L A EL + I +ITD+ + + R
Sbjct: 120 STVLEIIRTAKERKKRFKVILTESSPDYEGLHL-ARELEFSGIEFEVITDAQMG--LFCR 176
Query: 239 GVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIE 298
S +VGAD + +G NK GTY LA+ + IPFYVAA + L++G +++E
Sbjct: 177 EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKFHPTLKSGDVMLME 236
Query: 299 ERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAP 346
++L N VRI N FDVTP + GIITELG+ P
Sbjct: 237 ----RDLIRGN-VRIR-------NVLFDVTPWKYVR-GIITELGIVIP 271
>5B04-A nrPDB
Length = 341
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 77/167 (46%), Gaps = 27/167 (16%)
Query: 198 FCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTA 257
F TE+RP G +T L IP ++ DS V+ M V V+VGA+ VV NG
Sbjct: 165 FVTESRPSGSGCLMTR-TLKNACIPTCMVLDSAVSFTMNR--VDLVLVGAEGVVENGGLI 221
Query: 258 NKVGTYQLAIVAKHHGIPFYVAA---------PSSSCDLRLETGKEIIIEERPGQELTDV 308
N++GT+QLA+ AKH PFY A P S D+ + I+ + P E
Sbjct: 222 NQIGTFQLAVFAKHAHKPFYAVAESHKFVRMFPLSQYDIPF--SRPILEFDDPSPETVHP 279
Query: 309 NGVRIAAPGIGVW------------NPAFDVTPHDLITGGIITELGV 343
I P + NP DVTP + ++ G+IT+LG+
Sbjct: 280 EPEPIPTPSDAIHNELIMNEEQIRNNPTLDVTPPEFVS-GLITDLGI 325
>6O85-G nrPDB
Length = 305
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 14/202 (6%)
Query: 151 LLERVAPSGGKVTVLTHC---NTGALATAGYG-TALGVIRSLHSLGRLEHAFCTETRPYN 206
L R++ S K+ L H + + T Y L V+ + + + + TE++P
Sbjct: 100 FLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDL 159
Query: 207 QGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLA 266
G ++ A L + +P T++ D+ V M + V+VGA+ VV NG NK+GT Q+A
Sbjct: 160 SGKKM-AKALCHLNVPVTVVLDAAVGYIMEKADL--VIVGAEGVVENGGIINKIGTNQMA 216
Query: 267 IVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPG--IGVWNPA 324
+ AK PFYV A S +RL + ++ P + + +++A G + +P
Sbjct: 217 VCAKAQNKPFYVVAESFKF-VRLFPLNQ---QDVPDKFKYKADTLKVAQTGQDLKEEHPW 272
Query: 325 FDVTPHDLITGGIITELGVFAP 346
D T LIT + T+LGV P
Sbjct: 273 VDYTAPSLIT-LLFTDLGVLTP 293
>6O85-E nrPDB
Length = 523
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 130/289 (44%), Gaps = 52/289 (17%)
Query: 75 LVAFVRDKLSFLVTARPTAVNMARA----ARDLADVAAREAEREGATE------EAVRER 124
LV ++ +SFL RP + +M A +++ V + + E E +E V+E+
Sbjct: 252 LVNKLKPYMSFLTQCRPLSASMHNAIKFLNKEITSVGSSKREEEAKSELRAAIDRYVQEK 311
Query: 125 VICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTALGV 184
++ + + +R +++ S G V ++ C++ +
Sbjct: 312 IVLAAQAI---------------SRFAYQKI--SNGDVILVYGCSS---------LVSRI 345
Query: 185 IRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVV 244
++ + GR ++RP+ +G R T LV+ +PA+ + + AA+ VS V+
Sbjct: 346 LQEAWTEGRRFRVVVVDSRPWLEG-RHTLRSLVHAGVPASYLL--IPAASYVLPEVSKVL 402
Query: 245 VGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQE 304
+GA ++ANG ++VGT QLA+VA+ H +P V + R++T + E +
Sbjct: 403 LGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDD 462
Query: 305 LTDVNGVRIAAPGIGVW---------NPAFDVTPHDLITGGIITELGVF 344
L G +A + W N +DVTP +L+ +ITELG+
Sbjct: 463 LQCKRGEHVA---LANWQNHASLRLLNLVYDVTPPELV-DLVITELGMI 507
>6I3M-A nrPDB
Length = 305
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 81/181 (44%), Gaps = 29/181 (16%)
Query: 177 GYGTALGVIRSLHSLGRLEHAFC--TETRPYNQGARLTAFELVYEQIPATLITDSMVAAA 234
GY A+ + + H+ + C TE+RP QG +L L + IP TLI DS V A
Sbjct: 130 GYSRAVFSLLN-HAANKFIRFRCVVTESRPSKQGNQLYTL-LEQKGIPVTLIVDSAVGAV 187
Query: 235 MAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAA---------PSSSC 285
+ V V VGA+ V +G N VGTY + ++A + PFYV P SS
Sbjct: 188 IDK--VDKVFVGAEGVAESGGIINLVGTYSVGVLAHNARKPFYVVTESHKFVRMFPLSSD 245
Query: 286 DLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFA 345
DL + G + R +L D + P D T + IT +IT+LGV
Sbjct: 246 DLPM-AGPPLDFTRR-TDDLED-----------ALRGPTIDYTAQEYIT-ALITDLGVLT 291
Query: 346 P 346
P
Sbjct: 292 P 292
>6O81-C nrPDB
Length = 368
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 6/201 (2%)
Query: 165 LTHCNTG-ALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPA 223
L H ++ + T G+ + + R H E P+ QG + A L I
Sbjct: 173 LEHIHSNEVIMTIGFSRTVEAFLKEAARKRKFHVIVAECAPFCQGHEM-AVNLSKAGIET 231
Query: 224 TLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSS 283
T++TD+ + A M+ V+ V++G ++ANG GT+ LA+ AKHH P V AP
Sbjct: 232 TVMTDAAIFAVMSR--VNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPMF 289
Query: 284 SCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGV 343
+ ++ + +E+ I + V P FD P +LIT I+ +G
Sbjct: 290 KLSPQFPNEEDSFHKFVAPEEVLPFTEGDILE-KVSVHCPVFDYVPPELIT-LFISNIGG 347
Query: 344 FAPEELRTALTTTISSRDGTL 364
AP + ++ D L
Sbjct: 348 NAPSYIYRLMSELYHPDDHVL 368
>6JLZ-C nrPDB
Length = 399
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 201 ETRPYNQ-GARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANK 259
E P NQ G+ A L I T+I+D+ + A M+ V+ V++G ++ NG
Sbjct: 239 EGFPNNQKGSHAMAKRLAQAGIDTTVISDATIFAIMSR--VNKVILGTHAILGNGGLVTY 296
Query: 260 VGTYQLAIVAKHHGIP------FYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRI 313
G +A A+HH P Y +P DL + II P + ++ G I
Sbjct: 297 SGAQLVAQAARHHATPVVVCSGIYKLSPVYPYDL-----ESIIQLSSPDKIMSFNEGDLI 351
Query: 314 AAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSRDGTL 364
+ I NP +D P DL+ IT LG + P L + T + D L
Sbjct: 352 SRAEI--LNPYYDYIPPDLV-DLFITNLGGYPPSYLYRIMNDTYDASDTIL 399
>5B04-G nrPDB
Length = 467
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 118/293 (40%), Gaps = 55/293 (18%)
Query: 75 LVAFVRDKLSFLVTARPTAVNMARAAR-----------DLADVAAREAEREGATEEAVRE 123
L + ++++LV+ RP +++M A R DL D +E E + +R+
Sbjct: 190 LTTHINSQIAYLVSTRPLSISMGNAIRFLKLEISVLDIDLTDDEGKELLLE-KIDSYIRD 248
Query: 124 RVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTALG 183
R+I G + + E++ G V +LT+ ++ T
Sbjct: 249 RIIIA---------------GQVIVQAATEKI--QDGDV-ILTYLHSS--------TVND 282
Query: 184 VIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAV 243
V+ ++G+ ++RP +G R+ L I T + S ++ M + V+ +
Sbjct: 283 VLIHAKNVGKKFRVVVVDSRPEFEG-RVCLKLLTEHGIECTYVMISALSYIM--QEVTKI 339
Query: 244 VVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQ 303
+G +++NG ++ GT ++++ +P S R++ + E PG
Sbjct: 340 FLGGHAMLSNGALYSRAGTSLISLLGHESNVPVIACCESYKFTERIQLDSLVYNELAPGD 399
Query: 304 ELTDVNGVRIAAPGIGV---WNPA---------FDVTPHDLITGGIITELGVF 344
+L ++ GV GV W +DVTP LIT + E+G+
Sbjct: 400 QLVNM-GVDDFEEKPGVLANWKSVKNLKLLSLKYDVTPPRLIT-VCVCEMGLL 450
>4Q60-A nrPDB
Length = 332
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 151 LLERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRL 194
L E V+P V+ N+G L G+GT +GV+R+LH +GR+
Sbjct: 86 LCEPVSPDA-AAGVIFFNNSGYLGMCGHGT-IGVVRTLHHMGRI 127
>6I7T-C nrPDB
Length = 651
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 240 VSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEE 299
V V +GA +++NG ++ GT LA+ AK IP V C L+ + + ++
Sbjct: 467 VDYVFLGAHSILSNGFLYSRAGTAMLAMSAKRRNIPVLV------CCESLKFSQRVQLDS 520
Query: 300 RPGQELTDVNGV 311
EL D N +
Sbjct: 521 VTFNELADPNDL 532
>4J9X-A nrPDB
Length = 332
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 164 VLTHCNTGALATAGYGTALGVIRSLHSLGRLEHA 197
V+ N+G L G+GT +G++RSL+ LGR++
Sbjct: 98 VIFFNNSGYLGMCGHGT-IGLVRSLYHLGRIDQG 130
>6I3M-E nrPDB
Length = 381
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 125/335 (37%), Gaps = 52/335 (15%)
Query: 40 IRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARA 99
++ +V+G+ AIAL L L + + A + L+ +RD + L A PTA +
Sbjct: 29 LKRRQVQGSYAIAL-ETLQLLMRFISAARWNHVNDLIEQIRDLGNSLEKAHPTAFSCGNV 87
Query: 100 ARDLADVAAREAEREGATEEAVR----ERVICCTEDMLEKDLR----------------- 138
R + V E E + + E +I ++L+K +
Sbjct: 88 IRRILAVLRDEVEEDTMSTTVTSTSVAEPLISSMFNLLQKPEQPHQNRKNSSGSSSMKTK 147
Query: 139 -DNRSIGDLGARHLLERVAPSGGKVTV----LTHCNTGALA-TAGYGTALG-VIRSLHSL 191
D R + G + L++ + + L H + L T T L +I +
Sbjct: 148 TDYRQVAIQGIKDLIDEIKNIDEGIQQIAIDLIHDHEILLTPTPDSKTVLKFLITARERS 207
Query: 192 GRLEHAFCTETRPYN-QGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRV 250
R TE P N + A A +L I ++ DS V A M+ G V++G V
Sbjct: 208 NRTFTVLVTEGFPNNTKNAHEFAKKLAQHNIETLVVPDSAVFALMSRVG--KVIIGTKAV 265
Query: 251 VANGDT-ANKVGTYQLAIVAKHHGIP------FYVAAPSSSCDLR--LETG--KEIIIEE 299
NG T ++ G + A+ P Y +P D+ +E G + I+
Sbjct: 266 FVNGGTISSNSGVSSVCECAREFRTPVFAVAGLYKLSPLYPFDVEKFVEFGGSQRILPRM 325
Query: 300 RPGQELTDVNGVRIAAP---------GIGVWNPAF 325
P + L VN + P +G +NP+F
Sbjct: 326 DPRKRLDTVNQITDYVPPENIDIYITNVGGFNPSF 360
>3RJM-A nrPDB
Length = 169
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 191 LGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGAD 248
LG H C +T Q +L F Q+PA +TDS + A ++H GV + G D
Sbjct: 72 LGYDVHVLCDQTAQEMQ-EKLQNFA----QLPAHRVTDSCIVALLSH-GVEGAIYGVD 123
>1XET-A nrPDB
Length = 413
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 41/185 (22%)
Query: 102 DLADVAAREAEREGATEEAVRERVICCTEDMLEK--DLRDNRSIGDLGARHLL------- 152
+L D R ER A+++R + TE++L+K D+ + L AR +
Sbjct: 73 ELKDKFKRICERS-----AIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPR 127
Query: 153 ----------ERVAPSGGKVTVLTHCNTGA--LATAGYGTA--LGVIRSLHSLGRLEHA- 197
+ S +T L C+T L A + A LG+ S+ +G +H
Sbjct: 128 LAKEAAEKAIQEWGQSKSGITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGC 187
Query: 198 --------FCTETRPYNQGARLTAF----ELVYEQIPATLITDSMVAAAMAHRGVSAVVV 245
+ N+GAR+ V + P+ DS+V A+ G SA++V
Sbjct: 188 FAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIV 247
Query: 246 GADRV 250
GAD +
Sbjct: 248 GADPI 252
>6IXF-A nrPDB
Length = 228
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 93 AVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARHLL 152
A +AR A+ A A ++ +R A +E + + +LE D R S H
Sbjct: 66 ARRVARQAQLEAQKATQDFQRATEVLRAAKETISLAEQRLLEDDKRQFDSAWQEMLNHAT 125
Query: 153 ERVAPSGGKVT--VLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETRPY 205
+RVA + T L H T A Y A+G +R L +L+ A +++PY
Sbjct: 126 QRVAEAEQTKTRSELVHKETA----ARYNAAMGRMRQLE--KKLKRA-INKSKPY 173
>3A5R-A nrPDB
Length = 387
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 82/223 (36%), Gaps = 24/223 (10%)
Query: 49 PAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAA 108
P +A LA + G P A D F VT +N+ + + L + +
Sbjct: 2 PGMATEEMKKLATVMAIGTANPPNCYYQADFPD-FYFRVTNSDHLINLKQKFKRLCENSR 60
Query: 109 REAEREGATEEAVRERVICCTEDMLEKDLRDN---RSIGDLGARHLLERVAPSG---GKV 162
E TEE ++E + ++R + + +LG L+ + G K+
Sbjct: 61 IEKRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKI 120
Query: 163 TVLTHCNTGALATAGYGTALGVIRSLH-SLGRL--EHAFC----------TETRPYNQGA 209
T L C + G L + L S+ R H C + N+GA
Sbjct: 121 THLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGA 180
Query: 210 R--LTAFELVYEQI--PATLITDSMVAAAMAHRGVSAVVVGAD 248
R + E+ P+ DSM+ A+ G +AV+VGAD
Sbjct: 181 RVLIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGAD 223
>4JCI-A nrPDB
Length = 333
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 158 SGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRL 194
S V+ N+G L G+GT +G++ SLH LG+L
Sbjct: 92 SDASCGVIFFNNSGYLGMCGHGT-IGLVASLHHLGQL 127
>3TSY-A nrPDB
Length = 979
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 35/163 (21%)
Query: 121 VRERVICCTEDMLEK------------DLRDN------RSIGDLGARHLLERVAPSGGKV 162
+++R I TE+MLE+ ++R +G A L+ K+
Sbjct: 652 IKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKI 711
Query: 163 TVLTHCNTGALATAGYGTALGVIRSLHSLGR---LEHAFC----------TETRPYNQGA 209
T L C T + G L + L R L H C + N GA
Sbjct: 712 THLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGA 771
Query: 210 RL----TAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGAD 248
R+ + +V + P+ DS+V A+ G +AV+VG+D
Sbjct: 772 RVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSD 814
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4LDQ-A nrPDB 468 e-132
1T9K-A nrPDB 400 e-112
2A0U-A nrPDB 386 e-108
1T5O-A nrPDB 381 e-106
6A34-A nrPDB 357 3e-99
2YRF-A nrPDB 356 1e-98
3A9C-A nrPDB 325 2e-89
5YG5-A nrPDB 291 3e-79
6O81-C nrPDB 225 2e-59
6O85-E nrPDB 220 7e-58
6O85-G nrPDB 200 6e-52
6JLZ-C nrPDB 188 2e-48
1VB5-A nrPDB 175 3e-44
5B04-A nrPDB 167 7e-42
6I3M-A nrPDB 160 1e-39
Sequences not found previously or not previously below threshold:
5B04-G nrPDB 131 6e-31
6I3M-E nrPDB 123 1e-28
6I7T-C nrPDB 106 2e-23
5DBO-A nrPDB 78 8e-15
3RFT-A nrPDB 34 0.085
3L12-A nrPDB 31 0.84
6C4N-A nrPDB 30 1.7
2WX2-A nrPDB 30 2.1
6IOZ-A nrPDB 30 2.2
6EOT-A nrPDB 28 7.3
4HDT-A nrPDB 28 7.5
>4LDQ-A nrPDB
Length = 369
Score = 468 bits (1204), Expect = e-132, Method: Composition-based stats.
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA
Sbjct: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
Query: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA
Sbjct: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
Query: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT
Sbjct: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
Query: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV
Sbjct: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
Query: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER
Sbjct: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
Query: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR 360
PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR
Sbjct: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR 360
Query: 361 DGTLDGPQM 369
DGTLDGPQM
Sbjct: 361 DGTLDGPQM 369
>1T9K-A nrPDB
Length = 347
Score = 400 bits (1028), Expect = e-112, Method: Composition-based stats.
Identities = 149/348 (42%), Positives = 197/348 (56%), Gaps = 17/348 (4%)
Query: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
+ + + +S SL++LDQ LP Y + + AI+ M VRGAPAI +
Sbjct: 5 LKTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYV 64
Query: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
+ L+ G +L +++ L RPTAVN+ A + V A+RE E
Sbjct: 65 LGLRDYKTG----SLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENADRENLFEIL 120
Query: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
E + M +D+ N++IG GA+ + T+LTHCN GALAT YGT
Sbjct: 121 ENEAL-----KMAYEDIEVNKAIGKNGAQLIK-------DGSTILTHCNAGALATVDYGT 168
Query: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
ALGVIR+ G+ F ETRPY QGARLTA+EL+ + I +ITD+M M +
Sbjct: 169 ALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLI 228
Query: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
AVVVGADR+ NGDTANK+GTY LA++AK + IPFYVAAP S+ D + +G+EI IEER
Sbjct: 229 DAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEER 288
Query: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEE 348
+E+T G RIA G+ V NPAFDVT + LIT IITE GV P
Sbjct: 289 RPEEVTHCGGNRIAPEGVKVLNPAFDVTENTLIT-AIITEKGVIRPPF 335
>2A0U-A nrPDB
Length = 383
Score = 386 bits (992), Expect = e-108, Method: Composition-based stats.
Identities = 163/354 (46%), Positives = 219/354 (61%), Gaps = 10/354 (2%)
Query: 2 TLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAV 61
TLE+I+Y+ GSL++LDQ LP ++ ++ V +V W AI+ M+VRGAPAIA+ L +AV
Sbjct: 17 TLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAV 76
Query: 62 ELQAGAGGPGLA---ALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATE 118
Q A L + F+ F++T+RPTAVN+ RDL + + A E
Sbjct: 77 ATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAE 136
Query: 119 EAVRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSG-GKVTVLTHCNTGALATAG 177
V + + E + D+ N I GA H+L G KV++LT CNTGALAT+
Sbjct: 137 --VAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSR 194
Query: 178 YGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAH 237
YGTALGV+R L G+LE + ETRP+NQGARLT +E V E IP TLI D ++ M +
Sbjct: 195 YGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLN 254
Query: 238 RGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIII 297
R + AVVVGADR+ NGDTANK+GTY LA+ AK HG+ YVAAP+++ D++ +G + I
Sbjct: 255 RKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEI 314
Query: 298 EERPGQELTDV--NGVRIAA--PGIGVWNPAFDVTPHDLITGGIITELGVFAPE 347
EER E+T R+ A P + +WNP FD+TP +LITGGIITE GV AP
Sbjct: 315 EEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPA 368
>1T5O-A nrPDB
Length = 351
Score = 381 bits (977), Expect = e-106, Method: Composition-based stats.
Identities = 138/348 (39%), Positives = 197/348 (56%), Gaps = 17/348 (4%)
Query: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
M+L +I + G L+++DQ LP++ +V + +AI+ + VRGAPA+ G +A
Sbjct: 1 MSLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIA 59
Query: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
+ + + L ++ FL + RPTAVN+ + A + G + E
Sbjct: 60 LAAREREFA-DVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALK-----GESVEE 113
Query: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
V+E + E + E+D+ NR +G+ GA L G V VLT+CN G LAT +GT
Sbjct: 114 VKELALREAEKLAEEDVERNRKMGEYGAELL------EDGDV-VLTYCNAGRLATVDWGT 166
Query: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
ALGV+RS G+ ETRP NQG+RLT +EL+ + I TLITDSMV M V
Sbjct: 167 ALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMV 226
Query: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
V+VGADR+V + NK+GTY +++VAKHH IPFYVAAP ++ D T K+++IEER
Sbjct: 227 DKVIVGADRIVRD-AVFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEER 284
Query: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEE 348
P +EL +IA + V+NPAFD TP + +T +ITE GV P
Sbjct: 285 PREELIFCGKRQIAPLNVKVYNPAFDPTPLENVT-ALITEYGVIYPPY 331
>6A34-A nrPDB
Length = 364
Score = 357 bits (917), Expect = 3e-99, Method: Composition-based stats.
Identities = 139/349 (39%), Positives = 193/349 (55%), Gaps = 14/349 (4%)
Query: 4 EAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVEL 63
+ Y S+ +++Q LLPK+ + E V + EAI+ M VRGAPAI LA+
Sbjct: 15 RTVEYKNKSVYMINQRLLPKEFKVEKFSKVEEVAEAIKNMTVRGAPAIGAAAGFGLALYA 74
Query: 64 QAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEAVRE 123
+ L F + L RPTAVN+ A + + E E +E ++
Sbjct: 75 ETSKAKTKEEFLDGFEK-AYEILKNTRPTAVNLFWALNRIKKLV--EEHSEDPLDE-IKR 130
Query: 124 RVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTALG 183
++ + ++D+ N +G GA V P G +LTHCN G+LAT GT
Sbjct: 131 LIVQEAYKIADEDVEANLRMGHYGAE-----VLPEGN---ILTHCNAGSLATVHLGTVGS 182
Query: 184 VIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAV 243
V+R +H G L+ + ETRP QGARL+A+E Y+ + LI D+ A M V A+
Sbjct: 183 VVRVMHKDGSLKLLWLDETRPVLQGARLSAWEYSYDGLNVKLIADNAAAFVMQQGFVDAI 242
Query: 244 VVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQ 303
+VGADR+VANGD ANK+GTY LA++A+ HGIPF+ AP SS D+ L++GK+I IEER +
Sbjct: 243 IVGADRIVANGDFANKIGTYMLAVLAREHGIPFFAVAPLSSIDMELKSGKDIPIEERSPE 302
Query: 304 ELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTA 352
E+ G RIA + V+NPAFDVTPH +T GIIT+ GV P R
Sbjct: 303 EVLTCGGCRIAP-DVPVYNPAFDVTPHKYLT-GIITDRGVVWPPFKRNL 349
>2YRF-A nrPDB
Length = 374
Score = 356 bits (912), Expect = 1e-98, Method: Composition-based stats.
Identities = 132/348 (37%), Positives = 188/348 (54%), Gaps = 20/348 (5%)
Query: 4 EAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVEL 63
++ + ++ IL+Q LP ++ Y + + ++AI +KVRGAPAI + LA+
Sbjct: 30 RSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALA- 88
Query: 64 QAGAGGPGLAALVAFVR---DKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
A + F R D +L ++RPTA+N++ A L+ A
Sbjct: 89 ---AKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENAISVNEAKTNL 145
Query: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
V E + E D R IG + + ++T CN G++AT+ YGT
Sbjct: 146 VHEAIQIQVE-----DEETCRLIGQNALQLFKKGDR-------IMTICNAGSIATSRYGT 193
Query: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
AL H + ETRP QG+RLTA+EL+ I TLITDSM A M + +
Sbjct: 194 ALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQI 253
Query: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
SAV+VGADR+ NGDTANK+GTY LAI+A IPF+VAAP S+ D +++ G +I IEER
Sbjct: 254 SAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEER 313
Query: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEE 348
+E+ ++GVR A + V+NPAFD+TPHDLI+ GIITE G+
Sbjct: 314 DPEEVRQISGVRTAPSNVPVFNPAFDITPHDLIS-GIITEKGIMTGNY 360
>3A9C-A nrPDB
Length = 338
Score = 325 bits (832), Expect = 2e-89, Method: Composition-based stats.
Identities = 93/317 (29%), Positives = 148/317 (46%), Gaps = 21/317 (6%)
Query: 30 VGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTA 89
V V + E I+ M++RGA IA +L ++ + + + ++ L
Sbjct: 20 VKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAE-KSKATNVDEFWKEMKQAAKILFET 78
Query: 90 RPTAVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGAR 149
RPTAV++ A R + + A GA E +R +I ++ + + IG+ GA+
Sbjct: 79 RPTAVSLPNALRYVMH-RGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAK 137
Query: 150 HLLERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGA 209
+ G V ++THC++ A A+ V+++ G+ TETRP QG
Sbjct: 138 RI------EDGDV-IMTHCHSKA--------AISVMKTAWEQGKDIKVIVTETRPKWQG- 181
Query: 210 RLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVA 269
++TA EL IP + DS A + VV+GAD + NG NK+GT +A+ A
Sbjct: 182 KITAKELASYGIPVIYVVDSA--ARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTA 239
Query: 270 KHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTP 329
K H + +AA + G+ + IE R E+ + ++ I VWNPAFDVTP
Sbjct: 240 KEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTP 299
Query: 330 HDLITGGIITELGVFAP 346
+ + IITE G+ P
Sbjct: 300 PEYV-DVIITERGIIPP 315
>5YG5-A nrPDB
Length = 324
Score = 291 bits (744), Expect = 3e-79, Method: Composition-based stats.
Identities = 97/317 (30%), Positives = 149/317 (47%), Gaps = 21/317 (6%)
Query: 30 VGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTA 89
V V++ E I++M++RGA IA +L ++ + + L ++ L
Sbjct: 6 VKEVYETAEKIKSMEIRGAGRIARAAAQALMIQAE-KSKAKEPEELWNELKVASKILYNT 64
Query: 90 RPTAVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGAR 149
RPTAV++ A R + + A GA E +R I ++ + + IG++GA+
Sbjct: 65 RPTAVSLPNALRYVMH-RVKAAYLGGADLETLRFTAINSAKEFIYNSEKAIERIGEIGAK 123
Query: 150 HLLERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGA 209
+ G + ++THC++ A A+ V++ G+ TETRP QG
Sbjct: 124 RI------EDGDI-IMTHCHSKA--------AISVMKKAFEQGKNIKVIVTETRPKWQG- 167
Query: 210 RLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVA 269
++TA EL IP I DS A + VV+GAD + ANG NK+GT +A+ A
Sbjct: 168 KITAKELASYGIPVIYIVDSA--ARHYMKMTDKVVMGADSITANGAVINKIGTSLIALTA 225
Query: 270 KHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTP 329
K H + +AA + G+ + IE R E+ +R I VWNPAFDVTP
Sbjct: 226 KEHRVWVMIAAETYKFHPATMLGQLVEIEMRDPTEVIPEEELRTWPKNIEVWNPAFDVTP 285
Query: 330 HDLITGGIITELGVFAP 346
+ I IITE G+ P
Sbjct: 286 PEYI-DVIITERGIIPP 301
>6O81-C nrPDB
Length = 368
Score = 225 bits (574), Expect = 2e-59, Method: Composition-based stats.
Identities = 68/345 (19%), Positives = 125/345 (36%), Gaps = 20/345 (5%)
Query: 34 HQAWEAIRAMKVRGAPAIALVGC---LSLAVELQAGAGGPGLAALVAFVRDKLSFLVTAR 90
+ + +K G P + L L ++ L+ +R + + A+
Sbjct: 30 ERIESFVETLKRGGGPRSSEEMARETLGLLRQIITDHRWSNAGELMELIRREGRRMTAAQ 89
Query: 91 PTAVNMARAARDLADVAARE------AEREGATEEAVRERV----ICCTEDMLEKDLRDN 140
P+ + R + + E E +E++ + + + L+ N
Sbjct: 90 PSETTVGNMVRRVLKIIREEYGRLHGRSDESDQQESLHKLLTSGGLNEDFSFHYAQLQSN 149
Query: 141 RSIGDLGARHLLERVAPSGGKVTVLTHCNTG-ALATAGYGTALGVIRSLHSLGRLEHAFC 199
I + + L H ++ + T G+ + + R H
Sbjct: 150 -IIEAINELLVELEGTMENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEAARKRKFHVIV 208
Query: 200 TETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANK 259
E P+ QG + A L I T++TD+ + A M+ V+ V++G ++ANG
Sbjct: 209 AECAPFCQGHEM-AVNLSKAGIETTVMTDAAIFAVMSR--VNKVIIGTKTILANGALRAV 265
Query: 260 VGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIG 319
GT+ LA+ AKHH P V AP + ++ + +E+ I +
Sbjct: 266 TGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEGDILEK-VS 324
Query: 320 VWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSRDGTL 364
V P FD P +LIT I+ +G AP + ++ D L
Sbjct: 325 VHCPVFDYVPPELIT-LFISNIGGNAPSYIYRLMSELYHPDDHVL 368
>6O85-E nrPDB
Length = 523
Score = 220 bits (560), Expect = 7e-58, Method: Composition-based stats.
Identities = 75/320 (23%), Positives = 140/320 (43%), Gaps = 49/320 (15%)
Query: 45 VRGAPAIALVGCLSLAVELQAGAGGPGLA---ALVAFVRDKLSFLVTARPTAVNMARA-- 99
V G+ A + +L +Q P LV ++ +SFL RP + +M A
Sbjct: 219 VSGSNARCIALLRALQQVIQDYTTPPNEELSRDLVNKLKPYMSFLTQCRPLSASMHNAIK 278
Query: 100 --ARDLADVAAREAEREGATE------EAVRERVICCTEDMLEKDLRDNRSIGDLGARHL 151
+++ V + + E E +E V+E+++ + + +R
Sbjct: 279 FLNKEITSVGSSKREEEAKSELRAAIDRYVQEKIVLAAQAI---------------SRFA 323
Query: 152 LERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGARL 211
+++ S G V ++ C++ +++ + GR ++RP+ +G R
Sbjct: 324 YQKI--SNGDVILVYGCSS---------LVSRILQEAWTEGRRFRVVVVDSRPWLEG-RH 371
Query: 212 TAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKH 271
T LV+ +PA+ + + AA+ VS V++GA ++ANG ++VGT QLA+VA+
Sbjct: 372 TLRSLVHAGVPASYLL--IPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARA 429
Query: 272 HGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPG------IGVWNPAF 325
H +P V + R++T + E +L G +A + + N +
Sbjct: 430 HNVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGEHVALANWQNHASLRLLNLVY 489
Query: 326 DVTPHDLITGGIITELGVFA 345
DVTP +L+ +ITELG+
Sbjct: 490 DVTPPELV-DLVITELGMIP 508
>6O85-G nrPDB
Length = 305
Score = 200 bits (509), Expect = 6e-52, Method: Composition-based stats.
Identities = 79/302 (26%), Positives = 127/302 (42%), Gaps = 23/302 (7%)
Query: 67 AGGPGLAALVAFVRDKLSFLVTARPTAV-----NMARAARDLADVAAREAEREGATEEAV 121
P +A+ VA +R L FL + + N+ A L V + A G E +
Sbjct: 15 KEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDSSVAVSSGG-ELFL 73
Query: 122 RERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHC---NTGALATAGY 178
R + E D + I L R++ S K+ L H + + T Y
Sbjct: 74 RFISLASLE---YSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAY 130
Query: 179 GTA-LGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAH 237
L V+ + + + + TE++P G ++ A L + +P T++ D+ V M
Sbjct: 131 SRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKM-AKALCHLNVPVTVVLDAAVGYIMEK 189
Query: 238 RGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIII 297
V+VGA+ VV NG NK+GT Q+A+ AK PFYV A S +RL +
Sbjct: 190 A--DLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKF-VRLFPLNQ--- 243
Query: 298 EERPGQELTDVNGVRIAAPG--IGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTT 355
++ P + + +++A G + +P D T LIT + T+LGV P + L
Sbjct: 244 QDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLIT-LLFTDLGVLTPSAVSDELIK 302
Query: 356 TI 357
Sbjct: 303 LY 304
>6JLZ-C nrPDB
Length = 399
Score = 188 bits (478), Expect = 2e-48, Method: Composition-based stats.
Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 8/207 (3%)
Query: 161 KVTVLTHCNTG-ALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQ-GARLTAFELVY 218
+V + H ++ + T G + + R E P NQ G+ A L
Sbjct: 198 EVQSMDHLHSNEIILTQGCSKTVEAFLRFAAKKRKFSVIVAEGFPNNQKGSHAMAKRLAQ 257
Query: 219 EQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYV 278
I T+I+D+ + A M+ V+ V++G ++ NG G +A A+HH P V
Sbjct: 258 AGIDTTVISDATIFAIMSR--VNKVILGTHAILGNGGLVTYSGAQLVAQAARHHATPVVV 315
Query: 279 AAPSSSCDLRLETG-KEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGI 337
+ + II P + ++ G I+ I NP +D P DL+
Sbjct: 316 CSGIYKLSPVYPYDLESIIQLSSPDKIMSFNEGDLISRAEI--LNPYYDYIPPDLV-DLF 372
Query: 338 ITELGVFAPEELRTALTTTISSRDGTL 364
IT LG + P L + T + D L
Sbjct: 373 ITNLGGYPPSYLYRIMNDTYDASDTIL 399
>1VB5-A nrPDB
Length = 276
Score = 175 bits (444), Expect = 3e-44, Method: Composition-based stats.
Identities = 75/316 (23%), Positives = 124/316 (39%), Gaps = 51/316 (16%)
Query: 34 HQAWEAIRAMK---VRGAPAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTAR 90
+ E +R MK ++GA +A G + + A++ + +
Sbjct: 4 ERVLEILREMKRERIKGASWLAKKGAEAFLTLAEELDESLLEDAIMELREEVVKV----N 59
Query: 91 PTAVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARH 150
P+ ++ V R + E +R R + +GA+
Sbjct: 60 PSMASLYN-LARFIPVTNRRDILKSRALEFLRRM------------EEAKRELASIGAQL 106
Query: 151 LLERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGAR 210
+ G V ++TH + T L +IR+ + TE+ P +G
Sbjct: 107 I------DDGDV-IITHSFS--------STVLEIIRTAKERKKRFKVILTESSPDYEGLH 151
Query: 211 LTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAK 270
L A EL + I +ITD+ + + R S +VGAD + +G NK GTY LA+
Sbjct: 152 L-ARELEFSGIEFEVITDAQMG--LFCREASIAIVGADMITKDGYVVNKAGTYLLALACH 208
Query: 271 HHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPH 330
+ IPFYVAA + L++G +++E + + + N FDVTP
Sbjct: 209 ENAIPFYVAAETYKFHPTLKSGDVMLMERD------------LIRGNVRIRNVLFDVTPW 256
Query: 331 DLITGGIITELGVFAP 346
+ GIITELG+ P
Sbjct: 257 KYVR-GIITELGIVIP 271
>5B04-A nrPDB
Length = 341
Score = 167 bits (422), Expect = 7e-42, Method: Composition-based stats.
Identities = 68/313 (21%), Positives = 119/313 (38%), Gaps = 45/313 (14%)
Query: 54 VGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAER 113
V + V+L + + ++ + +++ + L ++++ R
Sbjct: 37 VAAIEALVQLLSRSQAKTISEFMDILQNGSNTLKEGVQNNISLSAGCDIFQRFVTRSLHD 96
Query: 114 EGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGAL 173
G E + ++ + +++ + I LG + + +
Sbjct: 97 VG-DFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIR----------------DGSVI 139
Query: 174 ATAGYGT-ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVA 232
T G+ V+ + F TE+RP G +T L IP ++ DS V+
Sbjct: 140 LTHGFSRGVAAVLLAAAKRHVRFKVFVTESRPSGSGCLMT-RTLKNACIPTCMVLDSAVS 198
Query: 233 AAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAA---------PSS 283
M V V+VGA+ VV NG N++GT+QLA+ AKH PFY A P S
Sbjct: 199 FTMNR--VDLVLVGAEGVVENGGLINQIGTFQLAVFAKHAHKPFYAVAESHKFVRMFPLS 256
Query: 284 SCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVW------------NPAFDVTPHD 331
D+ + I+ + P E I P + NP DVTP +
Sbjct: 257 QYDIPF--SRPILEFDDPSPETVHPEPEPIPTPSDAIHNELIMNEEQIRNNPTLDVTPPE 314
Query: 332 LITGGIITELGVF 344
++ G+IT+LG+
Sbjct: 315 FVS-GLITDLGII 326
>6I3M-A nrPDB
Length = 305
Score = 160 bits (404), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/295 (22%), Positives = 111/295 (37%), Gaps = 28/295 (9%)
Query: 55 GCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAERE 114
+ V L A ++ ++ L+ + P +V++ R
Sbjct: 25 AAIEALVTLLRIKTPETAAEMINTIKSSTEELIKSIPNSVSLRAGCDIFMRFVLRNLHLY 84
Query: 115 GATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALA 174
G E ++ +I + + + + I ++G + + + ++
Sbjct: 85 G-DWENCKQHLIENGQLFVSRAKKSRNKIAEIGVDFI------ADDDIILV--------- 128
Query: 175 TAGYGTALGVIRSLHSLGR--LEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVA 232
GY A+ + + H+ + TE+RP QG +L L + IP TLI DS V
Sbjct: 129 -HGYSRAVFSLLN-HAANKFIRFRCVVTESRPSKQGNQLYTL-LEQKGIPVTLIVDSAVG 185
Query: 233 AAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETG 292
A + V V VGA+ V +G N VGTY + ++A + PFYV S
Sbjct: 186 AVIDK--VDKVFVGAEGVAESGGIINLVGTYSVGVLAHNARKPFYVVTESHKFVRMFPLS 243
Query: 293 KEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPE 347
+ + P + T R + P D T + IT +IT+LGV P
Sbjct: 244 SDDLPMAGPPLDFTR----RTDDLEDALRGPTIDYTAQEYIT-ALITDLGVLTPS 293
>5B04-G nrPDB
Length = 467
Score = 131 bits (328), Expect = 6e-31, Method: Composition-based stats.
Identities = 52/305 (17%), Positives = 110/305 (36%), Gaps = 35/305 (11%)
Query: 64 QAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAAR--DLADVAAREAEREGATEEAV 121
Q G L + ++++LV+ RP +++M A R L + +E +
Sbjct: 179 QTPYGTTLSRHLTTHINSQIAYLVSTRPLSISMGNAIRFLKLEISVLDIDLTDDEGKELL 238
Query: 122 RERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTA 181
E++ D I G + +LT+ ++ T
Sbjct: 239 LEKI----------DSYIRDRIIIAGQVIVQAATEKIQDGDVILTYLHS--------STV 280
Query: 182 LGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVS 241
V+ ++G+ ++RP +G R+ L I T + S ++ M V+
Sbjct: 281 NDVLIHAKNVGKKFRVVVVDSRPEFEG-RVCLKLLTEHGIECTYVMISALSYIMQ--EVT 337
Query: 242 AVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERP 301
+ +G +++NG ++ GT ++++ +P S R++ + E P
Sbjct: 338 KIFLGGHAMLSNGALYSRAGTSLISLLGHESNVPVIACCESYKFTERIQLDSLVYNELAP 397
Query: 302 GQELTDVNGVRIAA-----------PGIGVWNPAFDVTPHDLITGGIITELGVFAPEELR 350
G +L ++ + + + +DVTP LIT + E+G+ +
Sbjct: 398 GDQLVNMGVDDFEEKPGVLANWKSVKNLKLLSLKYDVTPPRLIT-VCVCEMGLLPSTSVP 456
Query: 351 TALTT 355
+
Sbjct: 457 AIINE 461
>6I3M-E nrPDB
Length = 381
Score = 123 bits (309), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/364 (20%), Positives = 118/364 (32%), Gaps = 37/364 (10%)
Query: 32 SVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTARP 91
++ ++ +V+G+ AIAL L L + + A + L+ +RD + L A P
Sbjct: 21 TIDTFVAKLKRRQVQGSYAIALE-TLQLLMRFISAARWNHVNDLIEQIRDLGNSLEKAHP 79
Query: 92 TAVNMARAARDLADVAAREAEREGATE----------------------EAVRERVICCT 129
TA + R + V E E + + E + +
Sbjct: 80 TAFSCGNVIRRILAVLRDEVEEDTMSTTVTSTSVAEPLISSMFNLLQKPEQPHQNRKNSS 139
Query: 130 EDMLEKDLRDNRSIGDLGARHLLERVAPSGGKV----TVLTHCNTGALA-TAGYGTALGV 184
K D R + G + L++ + + L H + L T T L
Sbjct: 140 GSSSMKTKTDYRQVAIQGIKDLIDEIKNIDEGIQQIAIDLIHDHEILLTPTPDSKTVLKF 199
Query: 185 IRSLHSL-GRLEHAFCTETRPYN-QGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSA 242
+ + R TE P N + A A +L I ++ DS V A M+ V
Sbjct: 200 LITARERSNRTFTVLVTEGFPNNTKNAHEFAKKLAQHNIETLVVPDSAVFALMSR--VGK 257
Query: 243 VVVGADRVVANGDTANK-VGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERP 301
V++G V NG T + G + A+ P + A E +E
Sbjct: 258 VIIGTKAVFVNGGTISSNSGVSSVCECAREFRTPVFAVAGLYKLSPLYPFDVEKFVEFGG 317
Query: 302 GQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSRD 361
Q + + N D P + I IT +G F P + D
Sbjct: 318 SQRILPRMD---PRKRLDTVNQITDYVPPENI-DIYITNVGGFNPSFIYRIAWDNYKQID 373
Query: 362 GTLD 365
LD
Sbjct: 374 VHLD 377
>6I7T-C nrPDB
Length = 651
Score = 106 bits (263), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 21/248 (8%)
Query: 64 QAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAER--EGATEEAV 121
Q G L +++ ++ L ARP +V M A R L + + A ++ +
Sbjct: 308 QTPKGTTLSRNLTSYLSHQIDLLKKARPLSVTMGNAIRWLKQEISLIDPSTPDKAAKKDL 367
Query: 122 RERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTA 181
E++ ++ +E ++ I D + + E T++T+ ++ L
Sbjct: 368 CEKIGQFAKEKIEL---ADQLIIDNASTQIEEST-------TIVTYGSSKVLTEL----- 412
Query: 182 LGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVS 241
++ + SL + ++RP +G ++ A L + + + V
Sbjct: 413 --LLHNAISLKKNIKVIVVDSRPLFEGRKM-AETLRNAGVNVMYALITSLDTIFNM-DVD 468
Query: 242 AVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERP 301
V +GA +++NG ++ GT LA+ AK IP V S R++ E
Sbjct: 469 YVFLGAHSILSNGFLYSRAGTAMLAMSAKRRNIPVLVCCESLKFSQRVQLDSVTFNELAD 528
Query: 302 GQELTDVN 309
+L +++
Sbjct: 529 PNDLVNID 536
Score = 37.9 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 316 PGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTT 355
P + + N +D+TP + I +ITE G P + L
Sbjct: 608 PSLNIVNILYDLTPPEYIKK-VITEFGALPPSSVPVILRE 646
>5DBO-A nrPDB
Length = 466
Score = 77.5 bits (189), Expect = 8e-15, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 87/273 (31%), Gaps = 33/273 (12%)
Query: 79 VRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLR 138
+ ++ +L RP M A R L + E+ +E ++ + ++ + +
Sbjct: 209 LNPQIEYLTECRPMCFAMGNAIRLLKAKVNKFDI--NTPEDEAKEGLLEWIDFLINERIT 266
Query: 139 DNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAF 198
+ A + + G V + + G+ +
Sbjct: 267 LAEYVIARNAAQ-----SINDGDTIVTYG---------RHRLVEKTLLRARKEGKSFNVT 312
Query: 199 CTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTAN 258
+ +G L A L + IP + ++ S V +G + + ANG
Sbjct: 313 VLDDPYVGEGKEL-AKVLRHAGIPVLY-SPNLGGLRSKVPAASNVFLGGEAIFANGSLHA 370
Query: 259 KVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGI 318
GT +A+ A + G V + + D + + E +
Sbjct: 371 PSGTADVAMAATNAGAKVIVLCETINFDRERVSVDALTYNEIDPE-----------RNTG 419
Query: 319 GVWNPAFDVTPHDLITGGIITEL---GVFAPEE 348
+ FD T IT G+ITE+ G +P +
Sbjct: 420 DCFRLLFDNTHERYIT-GVITEIEFGGGNSPAQ 451
>3RFT-A nrPDB
Length = 267
Score = 34.4 bits (77), Expect = 0.085, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 27/140 (19%)
Query: 240 VSAVVVGADRVVANGDTA-----------NKVGTYQLAIVAKHHGIPFYVAAP---SSSC 285
V+A+V G D +V G + N +G Y L A+ HG P V A +
Sbjct: 58 VNAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGY 117
Query: 286 DLRL-ETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVF 344
+ G ++ ++ G +A FD + +G
Sbjct: 118 YPQTERLGPDVPARPDGLYGVSKCFGENLARM-------YFD----KFGQETALVRIGSC 166
Query: 345 APE-ELRTALTTTISSRDGT 363
PE L+T S D
Sbjct: 167 TPEPNNYRMLSTWFSHDDFV 186
>3L12-A nrPDB
Length = 313
Score = 30.9 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 281 PSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAF-DVTPHDLIT----- 334
P ++ D ++ K + + E +A+ G +W P F DVTP +L+
Sbjct: 212 PENADDPGEDSAKPVGPDYDRMTESLP---QAVASAGGQLWCPYFLDVTP-ELVAEAHDL 267
Query: 335 GGIITELGVFAPEELRTALTTTIS 358
G I+ V PE++R TT +
Sbjct: 268 GLIVLTWTVNEPEDIRRMATTGVD 291
>6C4N-A nrPDB
Length = 449
Score = 30.2 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 10/129 (7%)
Query: 105 DVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGG---- 160
+ A ++ A + ++ C D+ LG L V+ G
Sbjct: 88 NAALDVFHQDPAELRDDWQTLVLCVPADSYLDVVRGLPWERLGGVRTLLLVSAFIGANLL 147
Query: 161 -KVTVLTHCNTGALATAGYGTALGVI-----RSLHSLGRLEHAFCTETRPYNQGARLTAF 214
+ + C L+ + Y A VI + + +RP
Sbjct: 148 VRSALPAGCQATVLSLSSYYAATKVIDETQPLRALTKAVKRRVYLGSSRPDCPARETWRR 207
Query: 215 ELVYEQIPA 223
L +
Sbjct: 208 VLAGSGVEV 216
>2WX2-A nrPDB
Length = 473
Score = 29.8 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 91 PTAVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARH 150
P AV M R +AR E ++ + E ++ ++ KD + +G
Sbjct: 196 PAAVFMPWLLRLPLPQSARCREARAELQKILGEIIVAREKEEASKDNNTSDLLGG----- 250
Query: 151 LLERVAPSGGKVTVLTHC 168
LL+ V G ++++ C
Sbjct: 251 LLKAVYRDGTRMSLHEVC 268
>6IOZ-A nrPDB
Length = 517
Score = 29.8 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 270 KHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIG--VWNPAFDV 327
K PF++A + ++ E + G+ +NP D+
Sbjct: 180 KTSASPFFLAVGYHKPHIPFRY--PKEFQKLYPLENITLAPDPEVPDGLPPVAYNPWMDI 237
Query: 328 TPHDLITGGIITELGVFAPEELRTALTTTISSRDGTLD 365
+ + I+ P + + + + + LD
Sbjct: 238 RQREDVQALNISVPYGPIPVDFQRKIRQSYFASVSYLD 275
>6EOT-A nrPDB
Length = 898
Score = 27.9 bits (60), Expect = 7.3, Method: Composition-based stats.
Identities = 6/53 (11%), Positives = 15/53 (28%)
Query: 282 SSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLIT 334
S + + + ++ A + P D TP ++ +
Sbjct: 585 ISKYSNQKNPHCVSLYKLSSPEDDPTCKTKEFWATILDSAGPLPDYTPPEIFS 637
>4HDT-A nrPDB
Length = 353
Score = 27.9 bits (60), Expect = 7.5, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 27 YEAVGSVHQAWEAIRAMKVRGAPAIALVGCL-------SLAVELQAGAGGPGLAALVAFV 79
+ + + I A++ APA L +L+V L++ L +L +
Sbjct: 230 IDECYTGDTVADIIAALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTL 289
Query: 80 RDKLSF 85
R +
Sbjct: 290 RQEYRV 295
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.311 0.122 0.295
Lambda K H
0.267 0.0372 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,781,886
Number of Sequences: 36641
Number of extensions: 423003
Number of successful extensions: 1417
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 73
length of query: 369
length of database: 10,336,785
effective HSP length: 98
effective length of query: 271
effective length of database: 6,745,967
effective search space: 1828157057
effective search space used: 1828157057
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 59 (27.5 bits)