BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q9BUH6
         (204 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3WTF-A nrPDB                                                          401   e-112
3WTD-A nrPDB                                                          325   9e-90
4WJA-A nrPDB                                                          288   9e-79
4A7Z-A nrPDB                                                           30   0.57 
3S81-A nrPDB                                                           27   5.8  
3RSY-A nrPDB                                                           27   6.5  
2CQS-A nrPDB                                                           27   6.7  
6IAA-A nrPDB                                                           27   7.9  

>3WTF-A nrPDB
          Length = 206

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 60
           MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL
Sbjct: 3   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 62

Query: 61  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 120
           KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR
Sbjct: 63  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 122

Query: 121 LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPDPQRGGPGPGVRRRC 180
           LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPDPQRGGPGPGVRRRC
Sbjct: 123 LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPDPQRGGPGPGVRRRC 182

Query: 181 PGESLINPGFKSKKPAGGVDFDET 204
           PGESLINPGFKSKKPAGGVDFDET
Sbjct: 183 PGESLINPGFKSKKPAGGVDFDET 206


>3WTD-A nrPDB
          Length = 168

 Score =  325 bits (833), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 60
           MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL
Sbjct: 3   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 62

Query: 61  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 120
           KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR
Sbjct: 63  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 122

Query: 121 LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPD 166
           LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPD
Sbjct: 123 LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPD 168


>4WJA-A nrPDB
          Length = 161

 Score =  288 bits (738), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 60
           MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL
Sbjct: 17  MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 76

Query: 61  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 120
           KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR
Sbjct: 77  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 136

Query: 121 LRALTLGLAKRVWSLERRLAAAEET 145
           LRALTLGLAKRVWSLERRLAAAEET
Sbjct: 137 LRALTLGLAKRVWSLERRLAAAEET 161


>4A7Z-A nrPDB
          Length = 900

 Score = 30.4 bits (67), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 82  QQAVALTLQEDRAS--------LTLSGGPSALAFDLSKVPGPEAAPRLRALTLGLAKRVW 133
            Q  +L LQ++ A+        L L GGPS  A+++S VPG +      A T  L    W
Sbjct: 759 HQTASLALQKNDATDGTPVLALLDLDGGPSPQAWNISHVPGTDMYEIAHAKTGSLVCARW 818


>3S81-A nrPDB
          Length = 268

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 15/60 (25%)

Query: 59  ALKARFGL------SAAEDITPRF----RAACEQQAVALTLQE-----DRASLTLSGGPS 103
           A+K   G+      +A  D+  +F     A+C+QQ + L +       DR +  LSGGPS
Sbjct: 24  AMKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPS 83


>3RSY-A nrPDB
          Length = 822

 Score = 26.9 bits (58), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 32  GDRGGFNLYVTDAAELWSTCFTP--DSLAALKARFGL 66
            D GG  LYV D  ++W+  + P    L   +AR GL
Sbjct: 65  ADAGGRYLYVNDGGDVWTPSWLPVKADLDHFEARHGL 101


>2CQS-A nrPDB
          Length = 842

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 33  DRGGFNLYVTDAAELWSTCFTP--DSLAALKARFGL 66
           D GG  LYV D  ++W+  + P    L   +AR GL
Sbjct: 86  DAGGRYLYVNDGGDVWTPSWLPVKADLDHFEARHGL 121


>6IAA-A nrPDB
          Length = 859

 Score = 26.6 bits (57), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 96  LTLSGGPSALAFDLSKVPGPEAAPRLRALTLGLAKRVW 133
           +T SG   +  +DLS +PGP + P++  +T       W
Sbjct: 495 VTESGATISKNYDLSDLPGPPSKPQVTDVTKNSVTLSW 532


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3WTF-A nrPDB                                                          374   e-104
3WTD-A nrPDB                                                          305   1e-83
4WJA-A nrPDB                                                          286   6e-78

Sequences not found previously or not previously below threshold:

4A7Z-A nrPDB                                                           31   0.43 
3S81-A nrPDB                                                           30   0.68 
4FW9-A nrPDB                                                           30   0.86 
1N9W-A nrPDB                                                           30   0.89 
4LLS-A nrPDB                                                           29   1.4  
5BSZ-A nrPDB                                                           28   2.8  
4FWV-A nrPDB                                                           27   4.5  
2FZV-A nrPDB                                                           27   4.9  


CONVERGED!
>3WTF-A nrPDB
          Length = 206

 Score =  374 bits (961), Expect = e-104,   Method: Composition-based stats.
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 60
           MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL
Sbjct: 3   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 62

Query: 61  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 120
           KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR
Sbjct: 63  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 122

Query: 121 LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPDPQRGGPGPGVRRRC 180
           LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPDPQRGGPGPGVRRRC
Sbjct: 123 LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPDPQRGGPGPGVRRRC 182

Query: 181 PGESLINPGFKSKKPAGGVDFDET 204
           PGESLINPGFKSKKPAGGVDFDET
Sbjct: 183 PGESLINPGFKSKKPAGGVDFDET 206


>3WTD-A nrPDB
          Length = 168

 Score =  305 bits (780), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 60
           MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL
Sbjct: 3   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 62

Query: 61  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 120
           KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR
Sbjct: 63  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 122

Query: 121 LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPD 166
           LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPD
Sbjct: 123 LRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRPAGPQLFLPDPD 168


>4WJA-A nrPDB
          Length = 161

 Score =  286 bits (731), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 60
           MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL
Sbjct: 17  MDPLSPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAAL 76

Query: 61  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 120
           KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR
Sbjct: 77  KARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPR 136

Query: 121 LRALTLGLAKRVWSLERRLAAAEET 145
           LRALTLGLAKRVWSLERRLAAAEET
Sbjct: 137 LRALTLGLAKRVWSLERRLAAAEET 161


>4A7Z-A nrPDB
          Length = 900

 Score = 30.8 bits (68), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 82  QQAVALTLQEDRAS--------LTLSGGPSALAFDLSKVPGPEAAPRLRALTLGLAKRVW 133
            Q  +L LQ++ A+        L L GGPS  A+++S VPG +      A T  L    W
Sbjct: 759 HQTASLALQKNDATDGTPVLALLDLDGGPSPQAWNISHVPGTDMYEIAHAKTGSLVCARW 818


>3S81-A nrPDB
          Length = 268

 Score = 30.0 bits (66), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 9/48 (18%)

Query: 65  GLSAAEDITPRF----RAACEQQAVALTLQE-----DRASLTLSGGPS 103
           G +A  D+  +F     A+C+QQ + L +       DR +  LSGGPS
Sbjct: 36  GPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPS 83


>4FW9-A nrPDB
          Length = 732

 Score = 29.6 bits (65), Expect = 0.86,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 66  LSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGP---EAAPRLR 122
           L     +  RF+ A EQQ  AL  +   A   LS     L       PGP   E + RL 
Sbjct: 125 LREKTQLEARFKEAREQQLEALRREAQEAGFALSTNGERLEL---TGPGPVPAELSARLE 181

Query: 123 ALTLGLAKRVWSLERRLAAAEETAVSPRKSPR 154
            +TLG           LAA+ E  V+ R+  R
Sbjct: 182 EVTLG----------SLAASAELEVALRRLRR 203


>1N9W-A nrPDB
          Length = 422

 Score = 29.6 bits (65), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 111 KVPGPEAAPRLRALTLGLAKRVWSLERRLAAAEETAVSPRKSPRP 155
           K+P PE+A R+R L +  AK    LE  + A E   +SP   P P
Sbjct: 51  KLPLPESALRVRGLVVENAKAPGGLE--VQAKEVEVLSPALEPTP 93


>4LLS-A nrPDB
          Length = 311

 Score = 28.8 bits (63), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 92  DRASLTLSGGP-SALAFDLSKVPGPEAAPRLRA-LTLGLAKRVWS----LERRLAAAEET 145
           D A+  L+G     LAF+L   PG  A+  +RA L L LA+   +    L + L  A ET
Sbjct: 124 DDATAVLAGDALQTLAFELVTHPGASASAEVRADLALSLARASGAQGMVLGQALDIAAET 183

Query: 146 AVSP 149
           A +P
Sbjct: 184 ARAP 187


>5BSZ-A nrPDB
          Length = 250

 Score = 28.1 bits (61), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 51  CFTPDSLAALKARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLS 110
           C T + LA L   F  +A  +++P  RAA E++  A  + +               FDL 
Sbjct: 56  CGTGEHLAHLVEHFPDAAGVELSPAMRAAAERKLTATPVHQ----------ADMFDFDLG 105

Query: 111 KVPGP----EAAPRLRALTLGLAKRVWSLERRLAAAEETAVSPRKSP 153
           +V         +    A T  LA+ V ++ R L       + P  SP
Sbjct: 106 RVFDAVCCLTGSIAYAADTAELARAVRAMARHLPVGGVLVIDPWWSP 152


>4FWV-A nrPDB
          Length = 355

 Score = 27.3 bits (59), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 66  LSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGP---EAAPRLR 122
           L     +  RF+ A EQQ  AL  +   A   LS     L       PGP   E + RL 
Sbjct: 93  LREKTQLEARFKEAREQQLEALRREAQEAGFALSTNGERLEL---TGPGPVPAELSARLE 149

Query: 123 ALTLGLAKRVWSLERRLAAAEETAVSPRKSPR 154
            +TLG           +AA+ E  V+ R+  R
Sbjct: 150 EVTLG----------SMAASAELEVALRRLRR 171


>2FZV-A nrPDB
          Length = 279

 Score = 27.3 bits (59), Expect = 4.9,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 43/123 (34%), Gaps = 17/123 (13%)

Query: 33  DRGGFNLYVTDAAELWSTCFTPDSLAALKARF-----GLSAAEDITP----RFRAACEQQ 83
           D G  NLY    A        PDSL AL   F      L  A D  P        +   +
Sbjct: 12  DLGTENLYFQSNAMRLRHLSDPDSLPALDKSFAIERPALGLAPDAPPVRILLLYGSLRAR 71

Query: 84  AVALTLQEDRASLTLSGGPSALAFDLSKVPGPE--------AAPRLRALTLGLAKRVWSL 135
           + +    E+ A L    G     FD S +P P+        A   LRAL+     +VW  
Sbjct: 72  SFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCS 131

Query: 136 ERR 138
             R
Sbjct: 132 PER 134


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.316    0.137    0.425 

Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,659,015
Number of Sequences: 36641
Number of extensions: 410931
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 37
length of query: 204
length of database: 10,336,785
effective HSP length: 92
effective length of query: 112
effective length of database: 6,965,813
effective search space: 780171056
effective search space used: 780171056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.5 bits)