BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q9BTP7
(215 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4M6W-B nrPDB 405 e-114
2M9M-A nrPDB 292 7e-80
2LYH-A nrPDB 152 1e-37
2M9N-A nrPDB 120 3e-28
2BHN-A nrPDB 42 3e-04
2OWO-A nrPDB 34 0.051
4GLX-A nrPDB 34 0.052
1KFT-A nrPDB 30 1.0
4BXO-A nrPDB 28 3.7
4ZA5-A nrPDB 27 5.2
5FYJ-G nrPDB 27 5.3
4M6W-A nrPDB 27 6.2
>4M6W-B nrPDB
Length = 208
Score = 405 bits (1040), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/200 (99%), Positives = 200/200 (100%)
Query: 16 LGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTEADLVAGNGYRKR 75
+GHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTEADLVAGNGYRKR
Sbjct: 1 MGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTEADLVAGNGYRKR 60
Query: 76 LVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQE 135
LVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQE
Sbjct: 61 LVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQE 120
Query: 136 QTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGEL 195
QTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGEL
Sbjct: 121 QTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGEL 180
Query: 196 EQVVGQAVAQQIHAFFTQPR 215
EQVVGQAVAQQIHAFFTQPR
Sbjct: 181 EQVVGQAVAQQIHAFFTQPR 200
>2M9M-A nrPDB
Length = 147
Score = 292 bits (748), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MEKNPPDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILY 60
MEKNPPDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILY
Sbjct: 1 MEKNPPDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILY 60
Query: 61 VTEADLVAGNGYRKRLVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVA 120
VTEADLVAGNGYRKRLVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVA
Sbjct: 61 VTEADLVAGNGYRKRLVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVA 120
Query: 121 SQMEASCLVIQLVQEQTKE 139
SQMEASCLVIQLVQEQTKE
Sbjct: 121 SQMEASCLVIQLVQEQTKE 139
>2LYH-A nrPDB
Length = 98
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/84 (94%), Positives = 80/84 (95%)
Query: 132 LVQEQTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNAS 191
LV + EPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNAS
Sbjct: 15 LVPRGSLEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNAS 74
Query: 192 IGELEQVVGQAVAQQIHAFFTQPR 215
IGELEQVVGQAVAQQIHAFFTQPR
Sbjct: 75 IGELEQVVGQAVAQQIHAFFTQPR 98
>2M9N-A nrPDB
Length = 63
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 155 SEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQP 214
SEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQP
Sbjct: 3 SEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQP 62
Query: 215 R 215
R
Sbjct: 63 R 63
>2BHN-A nrPDB
Length = 214
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 110 LDLGMVLLPVASQMEASCLVIQLVQEQTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGV 169
LD G+ L+ + ++ L + T+E + ++ KK L L +Q PG+
Sbjct: 104 LDYGIRLMNTMDPKGTALVIESLARLSTREGGQRIVIHKKPRLSDVREWQLYILQSFPGI 163
Query: 170 GKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQAVAQQIHAFFTQP 214
G+ A +L++F S+++ AS E+ +V +G+ A++I P
Sbjct: 164 GRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTP 210
>2OWO-A nrPDB
Length = 671
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 169 VGKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQAVAQQIHAFFTQ 213
VG+ A L F +++ L ASI EL++V VG VA +H FF +
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE 566
>4GLX-A nrPDB
Length = 586
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 169 VGKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQAVAQQIHAFFTQ 213
VG+ A L F +++ L ASI EL++V VG VA +H FF +
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE 566
>1KFT-A nrPDB
Length = 78
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 162 TVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQI 207
+++ I GVG + +LL+ +Q L NAS+ E+ +V G Q +A++I
Sbjct: 25 SLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 72
>4BXO-A nrPDB
Length = 254
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 49 DFYLSNRCCILYVTEADLVAGNGYRKRLVRVRNSNNL--KGIVVVEKTRM----SEQYFP 102
D+ +SNR + ++++++ K + ++++ ++ + V+VEK R + + F
Sbjct: 60 DYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREKTGDTSRMFR 119
Query: 103 ALQKF-----TVLDLGMVLLPVASQMEASCLVIQLVQEQTKEPSKNPLLGKKRALLLSEP 157
+ + T++ G+ +L + Q E + L+ +L E KN + + ++
Sbjct: 120 RTKSYDSLLTTLIGAGIRILFSSCQEETADLLKEL---SLVEQRKNVGIHVPTVVNSNKS 176
Query: 158 SLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELE---QVVGQA---VAQQIHAFF 211
L+ IP + + A + +F S+++++N+S+ E+ QV Q + + IH F
Sbjct: 177 EALQFYLSIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVF 236
>4ZA5-A nrPDB
Length = 508
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 111 DLGMVLLPVASQMEASCLVIQLVQEQTKEPSKNPLLGKKRAL--LLSEPSLLR 161
DL + P+ +EA+ + ++ + K P N L+G K L +L P LR
Sbjct: 22 DLVEINTPIDPNLEAAAITRRVCETNDKAPLFNNLIGMKNGLFRILGAPGSLR 74
>5FYJ-G nrPDB
Length = 484
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 PDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTE 63
P D P +PL ++ N + + ++M I ++++ L P L+ C L T
Sbjct: 48 PTDPNPQEIPLKNVTENFNMWKNNMVEQMHEDIISLWDESLKPCVKLTPLCVTLICTN 105
>4M6W-A nrPDB
Length = 221
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 49 DFYLSNRCCILYVTEADLVAGNGYRKRLVRVRNSNNL--KGIVVVEKTRM----SEQYFP 102
D+ +SNR + ++++++ K + ++++ ++ + V+VEK R + + F
Sbjct: 44 DYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREKTGDTSRMFR 103
Query: 103 ALQKF-----TVLDLGMVLLPVASQMEASCLVIQLVQEQTKEPSKNPLLGKKRALLLSEP 157
+ + T++ G+ +L + Q E + L+ +L E KN + + ++
Sbjct: 104 RTKSYDSLLTTLIGAGIRILFSSCQEETADLLKEL---SLVEQRKNVGIHVPTVVNSNKS 160
Query: 158 SLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELE---QVVGQA---VAQQIHAFF 211
L+ IP + + A + +F S+++++N+S+ E+ QV Q + + IH F
Sbjct: 161 EALQFYLSIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVF 220
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4M6W-B nrPDB 363 e-101
2M9M-A nrPDB 284 2e-77
2BHN-A nrPDB 153 5e-38
2LYH-A nrPDB 128 2e-30
2M9N-A nrPDB 99 1e-21
Sequences not found previously or not previously below threshold:
1X2I-A nrPDB 52 2e-07
4GLX-A nrPDB 34 0.047
2OWO-A nrPDB 34 0.047
1KFT-A nrPDB 33 0.064
2GUH-A nrPDB 32 0.27
5FYJ-G nrPDB 29 1.3
3B0X-A nrPDB 29 1.3
5Y52-A nrPDB 29 1.4
2CSB-A nrPDB 29 1.6
4ITQ-A nrPDB 29 1.7
1DGS-A nrPDB 29 1.7
4GFJ-A nrPDB 29 1.8
5HM5-A nrPDB 29 2.0
6N8J-m nrPDB 27 7.1
1Z00-A nrPDB 27 7.5
2A1J-B nrPDB 27 7.6
4WA8-A nrPDB 27 8.5
>4M6W-B nrPDB
Length = 208
Score = 363 bits (933), Expect = e-101, Method: Composition-based stats.
Identities = 199/200 (99%), Positives = 200/200 (100%)
Query: 16 LGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTEADLVAGNGYRKR 75
+GHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTEADLVAGNGYRKR
Sbjct: 1 MGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTEADLVAGNGYRKR 60
Query: 76 LVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQE 135
LVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQE
Sbjct: 61 LVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQE 120
Query: 136 QTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGEL 195
QTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGEL
Sbjct: 121 QTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGEL 180
Query: 196 EQVVGQAVAQQIHAFFTQPR 215
EQVVGQAVAQQIHAFFTQPR
Sbjct: 181 EQVVGQAVAQQIHAFFTQPR 200
>2M9M-A nrPDB
Length = 147
Score = 284 bits (727), Expect = 2e-77, Method: Composition-based stats.
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MEKNPPDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILY 60
MEKNPPDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILY
Sbjct: 1 MEKNPPDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILY 60
Query: 61 VTEADLVAGNGYRKRLVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVA 120
VTEADLVAGNGYRKRLVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVA
Sbjct: 61 VTEADLVAGNGYRKRLVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVA 120
Query: 121 SQMEASCLVIQLVQEQTKE 139
SQMEASCLVIQLVQEQTKE
Sbjct: 121 SQMEASCLVIQLVQEQTKE 139
>2BHN-A nrPDB
Length = 214
Score = 153 bits (387), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 85 LKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQEQTKEPSKNP 144
++G V + R E+ A LD G+ L+ + ++ L + T+E +
Sbjct: 79 VEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALVIESLARLSTREGGQRI 138
Query: 145 LLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQA 202
++ KK L L +Q PG+G+ A +L++F S+++ AS E+ +V +G+
Sbjct: 139 VIHKKPRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEK 198
Query: 203 VAQQIHAFFTQP 214
A++I P
Sbjct: 199 RAEEIKKILMTP 210
>2LYH-A nrPDB
Length = 98
Score = 128 bits (321), Expect = 2e-30, Method: Composition-based stats.
Identities = 79/84 (94%), Positives = 80/84 (95%)
Query: 132 LVQEQTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNAS 191
LV + EPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNAS
Sbjct: 15 LVPRGSLEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNAS 74
Query: 192 IGELEQVVGQAVAQQIHAFFTQPR 215
IGELEQVVGQAVAQQIHAFFTQPR
Sbjct: 75 IGELEQVVGQAVAQQIHAFFTQPR 98
>2M9N-A nrPDB
Length = 63
Score = 99.3 bits (246), Expect = 1e-21, Method: Composition-based stats.
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 155 SEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQP 214
SEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQP
Sbjct: 3 SEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQP 62
Query: 215 R 215
R
Sbjct: 63 R 63
>1X2I-A nrPDB
Length = 75
Score = 52.3 bits (124), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 148 KKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQAVAQ 205
+K+AL L+E L V+ +P V A LL+ F S++++ AS+ EL +V +G+ +A+
Sbjct: 2 EKKALTLAERQRL-IVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAK 60
Query: 206 QIHAFFTQP 214
+I T P
Sbjct: 61 EIRRVITAP 69
>4GLX-A nrPDB
Length = 586
Score = 34.2 bits (77), Expect = 0.047, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 169 VGKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQAVAQQIHAFFTQ 213
VG+ A L F +++ L ASI EL++V VG VA +H FF +
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE 566
>2OWO-A nrPDB
Length = 671
Score = 34.2 bits (77), Expect = 0.047, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 169 VGKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQAVAQQIHAFFTQ 213
VG+ A L F +++ L ASI EL++V VG VA +H FF +
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE 566
>1KFT-A nrPDB
Length = 78
Score = 33.5 bits (75), Expect = 0.064, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 162 TVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQI 207
+++ I GVG + +LL+ +Q L NAS+ E+ +V G Q +A++I
Sbjct: 25 SLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 72
>2GUH-A nrPDB
Length = 214
Score = 31.5 bits (70), Expect = 0.27, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 135 EQTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNA 190
++T E S++ ++ + P T++ I V APL+++ F S +QL +A
Sbjct: 34 KRTAEQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDA 89
>5FYJ-G nrPDB
Length = 484
Score = 29.2 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 PDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVT 62
P D P +PL ++ N + + ++M I ++++ L P L+ C L T
Sbjct: 48 PTDPNPQEIPLKNVTENFNMWKNNMVEQMHEDIISLWDESLKPCVKLTPLCVTLICT 104
>3B0X-A nrPDB
Length = 575
Score = 29.2 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 146 LGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFP--SIQQLSNA-SIGELEQV--VG 200
+ K L P + V ++PGVG A LL + S+++L A G+L ++ G
Sbjct: 78 VRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFG 137
Query: 201 QAVAQQIH 208
A++I
Sbjct: 138 PKRAERIR 145
>5Y52-A nrPDB
Length = 331
Score = 29.2 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 176 LLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQPR 215
+L++FP +Q++ S + + + + +T+PR
Sbjct: 258 RILERFPQLQEVYFESQNHTWDKIVEEIGESEGKVYTEPR 297
>2CSB-A nrPDB
Length = 519
Score = 28.8 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 157 PSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSN-ASIGELEQV-----VGQAVAQQI 207
L + + GVG+ A LL+ F + +++ A E+E++ VG+ V + +
Sbjct: 407 EIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSL 463
>4ITQ-A nrPDB
Length = 107
Score = 28.8 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 138 KEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFP-----SIQQLSNASI 192
K+ +N ++GK + L ++ +PGVGKV+A ++++ ++ L + I
Sbjct: 44 KQGQENDVIGKMKVSAL--------LESLPGVGKVRAKQIMERLGISESRRVRGLGSNQI 95
Query: 193 GELEQVVG 200
LE+ G
Sbjct: 96 ASLEREFG 103
>1DGS-A nrPDB
Length = 667
Score = 28.8 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 157 PSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNAS 191
LL + +PGVG+V A L ++F ++ +L AS
Sbjct: 504 ERLLYAL-GLPGVGEVLARNLARRFGTMDRLLEAS 537
>4GFJ-A nrPDB
Length = 685
Score = 28.8 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 157 PSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSN-ASIGELEQV-----VGQAVAQQI 207
L + + GVG+ A LL+ F + +++ A E+E++ VG+ V + +
Sbjct: 407 EIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSL 463
>5HM5-A nrPDB
Length = 854
Score = 28.8 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 157 PSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSN-ASIGELEQV-----VGQAVAQQI 207
L + + GVG+ A LL+ F + +++ A E+E++ VG+ V + +
Sbjct: 407 EIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSL 463
>6N8J-m nrPDB
Length = 486
Score = 26.9 bits (58), Expect = 7.1, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 85 LKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQEQTK 138
+G+V VE EQY P + K + ++ +A+ + L ++Q +
Sbjct: 384 FRGVVRVEHVTHPEQYIPGVLKRCQVKHLERTYEISGWKDATEFIEILARKQGR 437
>1Z00-A nrPDB
Length = 89
Score = 26.9 bits (58), Expect = 7.5, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 163 VQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQAVAQQIHAFFTQP 214
+ + V K + LL F S++QL AS +L +G A+++ +P
Sbjct: 21 LTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 74
>2A1J-B nrPDB
Length = 91
Score = 26.9 bits (58), Expect = 7.6, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 163 VQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQV--VGQAVAQQIHAFFTQP 214
+ + V K + LL F S++QL AS +L +G A+++ +P
Sbjct: 34 LTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 87
>4WA8-A nrPDB
Length = 355
Score = 26.5 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 166 IPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQP 214
+PG+G +A L++K+ S+ +L + I + +++ F +P
Sbjct: 247 VPGIGPKRALQLIRKYGSLDELKDTDIWPKIERHLPVEPEKLRRLFLEP 295
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.313 0.138 0.386
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,090,443
Number of Sequences: 36641
Number of extensions: 304696
Number of successful extensions: 769
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 43
length of query: 215
length of database: 10,336,785
effective HSP length: 93
effective length of query: 122
effective length of database: 6,929,172
effective search space: 845358984
effective search space used: 845358984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 57 (26.5 bits)