BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q99J21
(580 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5WPT-A nrPDB 1199 0.0
6E7Z-A nrPDB 1063 0.0
6AYG-A nrPDB 628 e-180
5TJB-A nrPDB 380 e-106
5MKE-A nrPDB 40 0.004
6D1W-A nrPDB 39 0.005
5T4D-A nrPDB 37 0.024
6DU8-A nrPDB 32 0.53
5Z1W-A nrPDB 32 1.0
5E1J-A nrPDB 30 2.4
5ZYP-A nrPDB 29 4.4
>5WPT-A nrPDB
Length = 592
Score = 1199 bits (3101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/580 (100%), Positives = 580/580 (100%)
Query: 1 MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKG 60
MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKG
Sbjct: 1 MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKG 60
Query: 61 RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAY 120
RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAY
Sbjct: 61 RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAY 120
Query: 121 TQEQLYQAIFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPAND 180
TQEQLYQAIFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPAND
Sbjct: 121 TQEQLYQAIFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPAND 180
Query: 181 TFDIDPRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTI 240
TFDIDPRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTI
Sbjct: 181 TFDIDPRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTI 240
Query: 241 NLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLL 300
NLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLL
Sbjct: 241 NLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLL 300
Query: 301 FDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVT 360
FDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVT
Sbjct: 301 FDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVT 360
Query: 361 SDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV 420
SDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV
Sbjct: 361 SDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV 420
Query: 421 ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM 480
ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM
Sbjct: 421 ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM 480
Query: 481 QAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAY 540
QAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAY
Sbjct: 481 QAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAY 540
Query: 541 IEQCQDSPTSGKFRRGSGSACSLFCCCGRDSPEDHSLLVN 580
IEQCQDSPTSGKFRRGSGSACSLFCCCGRDSPEDHSLLVN
Sbjct: 541 IEQCQDSPTSGKFRRGSGSACSLFCCCGRDSPEDHSLLVN 580
>6E7Z-A nrPDB
Length = 580
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/580 (91%), Positives = 548/580 (94%)
Query: 1 MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKG 60
M PAG R SETERLLTPNPGYGTQ G SPAP TP EEEDLRRRLKYFFMSPCDKFRAKG
Sbjct: 1 MTAPAGPRGSETERLLTPNPGYGTQAGPSPAPPTPPEEEDLRRRLKYFFMSPCDKFRAKG 60
Query: 61 RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAY 120
RKPCKLMLQVVKILVVTVQLILFGLSNQL VTFREENTIAFRHLFLLGYSDG+DDTFAAY
Sbjct: 61 RKPCKLMLQVVKILVVTVQLILFGLSNQLAVTFREENTIAFRHLFLLGYSDGADDTFAAY 120
Query: 121 TQEQLYQAIFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPAND 180
T+EQLYQAIF+AVDQYL LP++SLGRYAYVRGGG PW NGS LALCQRYYHRGHVDPAND
Sbjct: 121 TREQLYQAIFHAVDQYLALPDVSLGRYAYVRGGGDPWTNGSGLALCQRYYHRGHVDPAND 180
Query: 181 TFDIDPRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTI 240
TFDIDP VVTDCIQVDPP+RPP PS+DL L+ S+SYKNLTLKFHKL+NVTIHF+LKTI
Sbjct: 181 TFDIDPMVVTDCIQVDPPERPPPPPSDDLTLLESSSSYKNLTLKFHKLVNVTIHFRLKTI 240
Query: 241 NLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLL 300
NLQSLINNEIPDCYTFS+LITFDNKAHSGRIPI LET+ HIQECKHPSV +HGDNSFRLL
Sbjct: 241 NLQSLINNEIPDCYTFSVLITFDNKAHSGRIPISLETQAHIQECKHPSVFQHGDNSFRLL 300
Query: 301 FDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVT 360
FDVVVILTCSLSFLLCARSLLRGFLLQNEFV FMWR+RGR ISLWERLEFVNGWYILLVT
Sbjct: 301 FDVVVILTCSLSFLLCARSLLRGFLLQNEFVGFMWRQRGRVISLWERLEFVNGWYILLVT 360
Query: 361 SDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV 420
SDVLTISGT+MKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFH YNILIATLRV
Sbjct: 361 SDVLTISGTIMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRV 420
Query: 421 ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM 480
ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM
Sbjct: 421 ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM 480
Query: 481 QAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAY 540
QAQQG SSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGG G E+SELQAY
Sbjct: 481 QAQQGRSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGAGAEESELQAY 540
Query: 541 IEQCQDSPTSGKFRRGSGSACSLFCCCGRDSPEDHSLLVN 580
I QCQDSPTSGKFRRGSGSACSL CCCGRD E+HSLLVN
Sbjct: 541 IAQCQDSPTSGKFRRGSGSACSLLCCCGRDPSEEHSLLVN 580
>6AYG-A nrPDB
Length = 558
Score = 628 bits (1619), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/545 (57%), Positives = 407/545 (74%), Gaps = 25/545 (4%)
Query: 33 TTPTEE----EDLRRRLKYFFMSPCDKFRAKGRKPCKLMLQVVKILVVTVQLILFGLSNQ 88
T+P+EE + +RR+LK+FFM+PC+KF A+GRKP KL +Q++KI +VT+QL+LFGLSNQ
Sbjct: 31 TSPSEELLLEDQMRRKLKFFFMNPCEKFWARGRKPWKLAIQILKIAMVTIQLVLFGLSNQ 90
Query: 89 LVVTFREENTIAFRHLFLLGYSDGSDDTFAAYTQEQLYQAIFYAVDQYLILPEISLGRYA 148
+VV F+EENTIAF+HLFL GY D DDT+A YTQ +Y + +AV+QYL L +S+G +A
Sbjct: 91 MVVAFKEENTIAFKHLFLKGYMDRMDDTYAVYTQSDVYDQLIFAVNQYLQLYNVSVGNHA 150
Query: 149 YVRGGGGPWANGSALALCQRYYHRGHVDPANDTFDIDPRVVTDCIQVDPPDRPPDI--PS 206
Y G SA+A+CQ +Y RG++ P NDTFDIDP + T+C V+P D P I P+
Sbjct: 151 YENKG----TKQSAMAICQHFYKRGNIYPGNDTFDIDPEIETECFFVEP-DEPFHIGTPA 205
Query: 207 EDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTINLQSLINNEIPDCYTFSILITFDNKA 266
E+ NLTL FH+L+ V + F+LK INLQ++ + E+PDCY F++ ITFDNKA
Sbjct: 206 EN---------KLNLTLDFHRLLTVELQFKLKAINLQTVRHQELPDCYDFTLTITFDNKA 256
Query: 267 HSGRIPIRLETKTHIQECK--HPSVSRHGDNSFRLLFDVVVILTCSLSFLLCARSLLRGF 324
HSGRI I L+ I+ECK H S S + + ++FD VILTC +S +LC RS++RG
Sbjct: 257 HSGRIKISLDNDISIRECKDWHVSGSIQKNTHYMMIFDAFVILTCLVSLILCIRSVIRGL 316
Query: 325 LLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVTSDVLTISGTVMKIGIEAKNLASYD 384
LQ EFV F +E+S+ +++EFVNGWYI+++ SD+LTI G+++K+ I+AK+L SYD
Sbjct: 317 QLQQEFVNFFLLHYKKEVSVSDQMEFVNGWYIMIIISDILTIIGSILKMEIQAKSLTSYD 376
Query: 385 VCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGW 444
VCSILLGTST+LVW+GVIRYL FF KYN+LI TL+ ALP+V+RFCCC A+IYLGYCFCGW
Sbjct: 377 VCSILLGTSTMLVWLGVIRYLGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGW 436
Query: 445 IVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISL 504
IVLGPYH KFRSL+MVSECLFSLINGDDMF TFA MQ + S LVWLFS++YLYSFISL
Sbjct: 437 IVLGPYHDKFRSLNMVSECLFSLINGDDMFATFAKMQQK---SYLVWLFSRIYLYSFISL 493
Query: 505 FIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAYIEQCQDSPTSGKFRRGSGSACSLF 564
FIYM+LSLFIALIT Y+TIK G ++EL+ +I +C+D P SGK+R SLF
Sbjct: 494 FIYMILSLFIALITDTYETIKQYQQDGFPETELRTFISECKDLPNSGKYRLEDDPPVSLF 553
Query: 565 CCCGR 569
CCC +
Sbjct: 554 CCCKK 558
>5TJB-A nrPDB
Length = 223
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/215 (86%), Positives = 199/215 (92%)
Query: 84 GLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAYTQEQLYQAIFYAVDQYLILPEIS 143
GLSNQL VTFREENTIAFRHLFLLGYSDG+DDTFAAYT+EQLYQAIF+AVDQYL LP++S
Sbjct: 3 GLSNQLAVTFREENTIAFRHLFLLGYSDGADDTFAAYTREQLYQAIFHAVDQYLALPDVS 62
Query: 144 LGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPANDTFDIDPRVVTDCIQVDPPDRPPD 203
LGRYAYVRGGG PW NGS LALCQRYYHRGHVDPANDTFDIDP VVTDCIQVDPP+RPP
Sbjct: 63 LGRYAYVRGGGDPWTNGSGLALCQRYYHRGHVDPANDTFDIDPMVVTDCIQVDPPERPPP 122
Query: 204 IPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTINLQSLINNEIPDCYTFSILITFD 263
PS+DL L+ S+SYKNLTLKFHKL+NVTIHF+LKTINLQSLINNEIPDCYTFS+LITFD
Sbjct: 123 PPSDDLTLLESSSSYKNLTLKFHKLVNVTIHFRLKTINLQSLINNEIPDCYTFSVLITFD 182
Query: 264 NKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFR 298
NKAHSGRIPI LET+ HIQECKHPSV +HGDNS
Sbjct: 183 NKAHSGRIPISLETQAHIQECKHPSVFQHGDNSLE 217
>5MKE-A nrPDB
Length = 968
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 389 LLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLG 448
+ + VW+ + +++ F + L T+ + F +I+L Y ++V G
Sbjct: 561 IAAVTVFFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMFFIIFLAYAQLAYLVFG 620
Query: 449 PYHVKFRSLSMVSECLFS---LINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLF 505
+ S EC+F+ +I GD + FA ++ + +Y +F+
Sbjct: 621 ---TQVDDFSTFQECIFTQFRIILGD---INFAEIEEANR------VLGPIYFTTFVFFM 668
Query: 506 IYMVLSLFIALITGAYDTIKHPGGTGTEKSELQ 538
+++L++F+A+I Y +K +K+E++
Sbjct: 669 FFILLNMFLAIINDTYSEVK--SDLAQQKAEME 699
>6D1W-A nrPDB
Length = 740
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 389 LLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLG 448
+ + VW+ + +++ F + L T+ + F +I+L Y ++V G
Sbjct: 509 IAAVTVFFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMPFIIFLAYAQLAYLVFG 568
Query: 449 PYHVKFRSLSMVSECLFS---LINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLF 505
+ S EC+F+ +I GD + FA ++ + +Y +F+
Sbjct: 569 ---TQVDDFSTFQECIFTQFRIILGD---INFAEIEEANR------VLGPIYFTTFVFFM 616
Query: 506 IYMVLSLFIALITGAYDTIKHPGGTGTEKSELQ 538
+++L++F+A+I Y +K +K+E++
Sbjct: 617 FFILLNMFLAIINDTYSEVK--SDLAQQKAEME 647
>5T4D-A nrPDB
Length = 510
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 391 GTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPY 450
+ VW+ + +++ F + L T+ + F +I+L Y ++V G
Sbjct: 371 AVTVFFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMFFIIFLAYAQLAYLVFG-- 428
Query: 451 HVKFRSLSMVSECLFS---LINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIY 507
+ S EC+F+ +I GD + FA ++ + +Y +F+ +
Sbjct: 429 -TQVDDFSTFQECIFTQFRIILGD---INFAEIEEANR------VLGPIYFTTFVFFMFF 478
Query: 508 MVLSLFIALITGAYDTIKHPGGTGTEKSELQ 538
++L++F+A+I Y +K +K+E++
Sbjct: 479 ILLNMFLAIINDTYSEVK--SDLAQQKAEME 507
>6DU8-A nrPDB
Length = 805
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 395 LLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKF 454
W+ + +Y++F L +TL ++ F +++ Y G+++ G +
Sbjct: 447 FFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAVMFFIVFFAYAQLGYLLFG---TQV 503
Query: 455 RSLSMVSECLFS---LINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLS 511
+ S +C+F+ +I GD F A A + + Y +++ +++L+
Sbjct: 504 ENFSTFIKCIFTQFRIILGD--FDYNAIDNANR-------ILGPAYFVTYVFFVFFVLLN 554
Query: 512 LFIALITGAYDTIKHPGGTGTEKSELQ 538
+F+A+I Y +K +K ELQ
Sbjct: 555 MFLAIINDTYSEVKEE--LAGQKDELQ 579
>5Z1W-A nrPDB
Length = 566
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/152 (18%), Positives = 68/152 (44%), Gaps = 15/152 (9%)
Query: 395 LLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKF 454
W+ + +Y++F L +TL ++ F +++ Y G+++ G +
Sbjct: 384 FFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAIMFFIVFFAYAQLGYLLFG---TQV 440
Query: 455 RSLSMVSECLFS---LINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLS 511
+ S +C+F+ +I GD F A A + + +Y +++ +++L+
Sbjct: 441 ENFSTFVKCIFTQFRIILGD--FDYNAIDNANR-------ILGPVYFVTYVFFVFFVLLN 491
Query: 512 LFIALITGAYDTIKHPGGTGTEKSELQAYIEQ 543
+F+A+I Y +K ++ +L +++Q
Sbjct: 492 MFLAIINDTYSEVKEELAGQKDQLQLSDFLKQ 523
>5E1J-A nrPDB
Length = 741
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 41/182 (22%)
Query: 401 VIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMV 460
+IR L +Y IAT +PS+M + + + YC G V G ++
Sbjct: 541 LIRLLMNVQRYRAFIATFITLIPSLMPYLGTIFCVLCIYCSIGVQVFGGL------VNAG 594
Query: 461 SECLFSLINGDDMFVTFAAMQAQQGHSSL----------VWL----------FSQLYLYS 500
++ LF +D ++ F G +L VW+ +S Y S
Sbjct: 595 NKKLFETELAEDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMESYKDLTGTWWSITYFVS 654
Query: 501 FISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAYIE---QCQDSPTSGKFRRGS 557
F + I ++L+L +A + A+ T EL E Q QDS RR +
Sbjct: 655 FYVITILLLLNLVVAFVLEAFFT------------ELDLEEEEKCQGQDSQEKRNRRRSA 702
Query: 558 GS 559
GS
Sbjct: 703 GS 704
>5ZYP-A nrPDB
Length = 390
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 153 GGGPWANGSALALCQRYYHRGHVDPANDTFDI 184
G P G+ LA + YY RGH D A +T D+
Sbjct: 132 GFDPTWIGNMLATVELYYQRGHYDKALETSDL 163
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5WPT-A nrPDB 1100 0.0
6E7Z-A nrPDB 1051 0.0
6AYG-A nrPDB 866 0.0
5TJB-A nrPDB 388 e-108
Sequences not found previously or not previously below threshold:
5MKE-A nrPDB 45 1e-04
6D1W-A nrPDB 44 2e-04
5T4D-A nrPDB 43 4e-04
5Z1W-A nrPDB 34 0.18
6DU8-A nrPDB 33 0.29
6E2G-A nrPDB 33 0.30
6BOA-A nrPDB 33 0.49
6DMR-A nrPDB 31 1.7
4F86-A nrPDB 30 2.9
6MVG-A nrPDB 30 3.2
6MVH-A nrPDB 30 3.7
4QQS-A nrPDB 29 5.0
5ZYP-A nrPDB 29 5.6
3KW7-A nrPDB 29 6.2
3RSY-A nrPDB 29 7.2
5E1J-A nrPDB 28 8.0
1ECF-A nrPDB 28 8.2
>5WPT-A nrPDB
Length = 592
Score = 1100 bits (2844), Expect = 0.0, Method: Composition-based stats.
Identities = 580/580 (100%), Positives = 580/580 (100%)
Query: 1 MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKG 60
MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKG
Sbjct: 1 MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKG 60
Query: 61 RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAY 120
RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAY
Sbjct: 61 RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAY 120
Query: 121 TQEQLYQAIFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPAND 180
TQEQLYQAIFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPAND
Sbjct: 121 TQEQLYQAIFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPAND 180
Query: 181 TFDIDPRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTI 240
TFDIDPRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTI
Sbjct: 181 TFDIDPRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTI 240
Query: 241 NLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLL 300
NLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLL
Sbjct: 241 NLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLL 300
Query: 301 FDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVT 360
FDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVT
Sbjct: 301 FDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVT 360
Query: 361 SDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV 420
SDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV
Sbjct: 361 SDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV 420
Query: 421 ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM 480
ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM
Sbjct: 421 ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM 480
Query: 481 QAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAY 540
QAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAY
Sbjct: 481 QAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAY 540
Query: 541 IEQCQDSPTSGKFRRGSGSACSLFCCCGRDSPEDHSLLVN 580
IEQCQDSPTSGKFRRGSGSACSLFCCCGRDSPEDHSLLVN
Sbjct: 541 IEQCQDSPTSGKFRRGSGSACSLFCCCGRDSPEDHSLLVN 580
>6E7Z-A nrPDB
Length = 580
Score = 1051 bits (2719), Expect = 0.0, Method: Composition-based stats.
Identities = 530/580 (91%), Positives = 548/580 (94%)
Query: 1 MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKG 60
M PAG R SETERLLTPNPGYGTQ G SPAP TP EEEDLRRRLKYFFMSPCDKFRAKG
Sbjct: 1 MTAPAGPRGSETERLLTPNPGYGTQAGPSPAPPTPPEEEDLRRRLKYFFMSPCDKFRAKG 60
Query: 61 RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAY 120
RKPCKLMLQVVKILVVTVQLILFGLSNQL VTFREENTIAFRHLFLLGYSDG+DDTFAAY
Sbjct: 61 RKPCKLMLQVVKILVVTVQLILFGLSNQLAVTFREENTIAFRHLFLLGYSDGADDTFAAY 120
Query: 121 TQEQLYQAIFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPAND 180
T+EQLYQAIF+AVDQYL LP++SLGRYAYVRGGG PW NGS LALCQRYYHRGHVDPAND
Sbjct: 121 TREQLYQAIFHAVDQYLALPDVSLGRYAYVRGGGDPWTNGSGLALCQRYYHRGHVDPAND 180
Query: 181 TFDIDPRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTI 240
TFDIDP VVTDCIQVDPP+RPP PS+DL L+ S+SYKNLTLKFHKL+NVTIHF+LKTI
Sbjct: 181 TFDIDPMVVTDCIQVDPPERPPPPPSDDLTLLESSSSYKNLTLKFHKLVNVTIHFRLKTI 240
Query: 241 NLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLL 300
NLQSLINNEIPDCYTFS+LITFDNKAHSGRIPI LET+ HIQECKHPSV +HGDNSFRLL
Sbjct: 241 NLQSLINNEIPDCYTFSVLITFDNKAHSGRIPISLETQAHIQECKHPSVFQHGDNSFRLL 300
Query: 301 FDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVT 360
FDVVVILTCSLSFLLCARSLLRGFLLQNEFV FMWR+RGR ISLWERLEFVNGWYILLVT
Sbjct: 301 FDVVVILTCSLSFLLCARSLLRGFLLQNEFVGFMWRQRGRVISLWERLEFVNGWYILLVT 360
Query: 361 SDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV 420
SDVLTISGT+MKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFH YNILIATLRV
Sbjct: 361 SDVLTISGTIMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRV 420
Query: 421 ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM 480
ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM
Sbjct: 421 ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAM 480
Query: 481 QAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAY 540
QAQQG SSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGG G E+SELQAY
Sbjct: 481 QAQQGRSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGAGAEESELQAY 540
Query: 541 IEQCQDSPTSGKFRRGSGSACSLFCCCGRDSPEDHSLLVN 580
I QCQDSPTSGKFRRGSGSACSL CCCGRD E+HSLLVN
Sbjct: 541 IAQCQDSPTSGKFRRGSGSACSLLCCCGRDPSEEHSLLVN 580
>6AYG-A nrPDB
Length = 558
Score = 866 bits (2239), Expect = 0.0, Method: Composition-based stats.
Identities = 314/545 (57%), Positives = 407/545 (74%), Gaps = 25/545 (4%)
Query: 33 TTPTEE----EDLRRRLKYFFMSPCDKFRAKGRKPCKLMLQVVKILVVTVQLILFGLSNQ 88
T+P+EE + +RR+LK+FFM+PC+KF A+GRKP KL +Q++KI +VT+QL+LFGLSNQ
Sbjct: 31 TSPSEELLLEDQMRRKLKFFFMNPCEKFWARGRKPWKLAIQILKIAMVTIQLVLFGLSNQ 90
Query: 89 LVVTFREENTIAFRHLFLLGYSDGSDDTFAAYTQEQLYQAIFYAVDQYLILPEISLGRYA 148
+VV F+EENTIAF+HLFL GY D DDT+A YTQ +Y + +AV+QYL L +S+G +A
Sbjct: 91 MVVAFKEENTIAFKHLFLKGYMDRMDDTYAVYTQSDVYDQLIFAVNQYLQLYNVSVGNHA 150
Query: 149 YVRGGGGPWANGSALALCQRYYHRGHVDPANDTFDIDPRVVTDCIQVDPPDRPPDI--PS 206
Y G SA+A+CQ +Y RG++ P NDTFDIDP + T+C V+P D P I P+
Sbjct: 151 YENKG----TKQSAMAICQHFYKRGNIYPGNDTFDIDPEIETECFFVEP-DEPFHIGTPA 205
Query: 207 EDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTINLQSLINNEIPDCYTFSILITFDNKA 266
E+ NLTL FH+L+ V + F+LK INLQ++ + E+PDCY F++ ITFDNKA
Sbjct: 206 EN---------KLNLTLDFHRLLTVELQFKLKAINLQTVRHQELPDCYDFTLTITFDNKA 256
Query: 267 HSGRIPIRLETKTHIQECK--HPSVSRHGDNSFRLLFDVVVILTCSLSFLLCARSLLRGF 324
HSGRI I L+ I+ECK H S S + + ++FD VILTC +S +LC RS++RG
Sbjct: 257 HSGRIKISLDNDISIRECKDWHVSGSIQKNTHYMMIFDAFVILTCLVSLILCIRSVIRGL 316
Query: 325 LLQNEFVVFMWRRRGREISLWERLEFVNGWYILLVTSDVLTISGTVMKIGIEAKNLASYD 384
LQ EFV F +E+S+ +++EFVNGWYI+++ SD+LTI G+++K+ I+AK+L SYD
Sbjct: 317 QLQQEFVNFFLLHYKKEVSVSDQMEFVNGWYIMIIISDILTIIGSILKMEIQAKSLTSYD 376
Query: 385 VCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGW 444
VCSILLGTST+LVW+GVIRYL FF KYN+LI TL+ ALP+V+RFCCC A+IYLGYCFCGW
Sbjct: 377 VCSILLGTSTMLVWLGVIRYLGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGW 436
Query: 445 IVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISL 504
IVLGPYH KFRSL+MVSECLFSLINGDDMF TFA MQ + S LVWLFS++YLYSFISL
Sbjct: 437 IVLGPYHDKFRSLNMVSECLFSLINGDDMFATFAKMQQK---SYLVWLFSRIYLYSFISL 493
Query: 505 FIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAYIEQCQDSPTSGKFRRGSGSACSLF 564
FIYM+LSLFIALIT Y+TIK G ++EL+ +I +C+D P SGK+R SLF
Sbjct: 494 FIYMILSLFIALITDTYETIKQYQQDGFPETELRTFISECKDLPNSGKYRLEDDPPVSLF 553
Query: 565 CCCGR 569
CCC +
Sbjct: 554 CCCKK 558
>5TJB-A nrPDB
Length = 223
Score = 388 bits (998), Expect = e-108, Method: Composition-based stats.
Identities = 185/215 (86%), Positives = 199/215 (92%)
Query: 84 GLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAYTQEQLYQAIFYAVDQYLILPEIS 143
GLSNQL VTFREENTIAFRHLFLLGYSDG+DDTFAAYT+EQLYQAIF+AVDQYL LP++S
Sbjct: 3 GLSNQLAVTFREENTIAFRHLFLLGYSDGADDTFAAYTREQLYQAIFHAVDQYLALPDVS 62
Query: 144 LGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPANDTFDIDPRVVTDCIQVDPPDRPPD 203
LGRYAYVRGGG PW NGS LALCQRYYHRGHVDPANDTFDIDP VVTDCIQVDPP+RPP
Sbjct: 63 LGRYAYVRGGGDPWTNGSGLALCQRYYHRGHVDPANDTFDIDPMVVTDCIQVDPPERPPP 122
Query: 204 IPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTINLQSLINNEIPDCYTFSILITFD 263
PS+DL L+ S+SYKNLTLKFHKL+NVTIHF+LKTINLQSLINNEIPDCYTFS+LITFD
Sbjct: 123 PPSDDLTLLESSSSYKNLTLKFHKLVNVTIHFRLKTINLQSLINNEIPDCYTFSVLITFD 182
Query: 264 NKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFR 298
NKAHSGRIPI LET+ HIQECKHPSV +HGDNS
Sbjct: 183 NKAHSGRIPISLETQAHIQECKHPSVFQHGDNSLE 217
>5MKE-A nrPDB
Length = 968
Score = 44.6 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 389 LLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLG 448
+ + VW+ + +++ F + L T+ + F +I+L Y ++V G
Sbjct: 561 IAAVTVFFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMFFIIFLAYAQLAYLVFG 620
Query: 449 PYHVKFRSLSMVSECLFS---LINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLF 505
F S EC+F+ +I GD + FA ++ + +Y +F+
Sbjct: 621 TQVDDF---STFQECIFTQFRIILGD---INFAEIEEANR------VLGPIYFTTFVFFM 668
Query: 506 IYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAYIEQ 543
+++L++F+A+I Y +K + EL I +
Sbjct: 669 FFILLNMFLAIINDTYSEVKSDLAQQKAEMELSDLIRK 706
>6D1W-A nrPDB
Length = 740
Score = 44.2 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 389 LLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLG 448
+ + VW+ + +++ F + L T+ + F +I+L Y ++V G
Sbjct: 509 IAAVTVFFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMPFIIFLAYAQLAYLVFG 568
Query: 449 PYHVKFRSLSMVSECLFS---LINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLF 505
F S EC+F+ +I GD + FA ++ + +Y +F+
Sbjct: 569 TQVDDF---STFQECIFTQFRIILGD---INFAEIEEANR------VLGPIYFTTFVFFM 616
Query: 506 IYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAYIEQ 543
+++L++F+A+I Y +K + EL I +
Sbjct: 617 FFILLNMFLAIINDTYSEVKSDLAQQKAEMELSDLIRK 654
>5T4D-A nrPDB
Length = 510
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 389 LLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLG 448
+ + VW+ + +++ F + L T+ + F +I+L Y ++V G
Sbjct: 369 IAAVTVFFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMFFIIFLAYAQLAYLVFG 428
Query: 449 PYHVKFRSLSMVSECLFS---LINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLF 505
F S EC+F+ +I GD + FA ++ + +Y +F+
Sbjct: 429 TQVDDF---STFQECIFTQFRIILGD---INFAEIEEANR------VLGPIYFTTFVFFM 476
Query: 506 IYMVLSLFIALITGAYDTIKHPGGTGTEKSEL 537
+++L++F+A+I Y +K + EL
Sbjct: 477 FFILLNMFLAIINDTYSEVKSDLAQQKAEMEL 508
>5Z1W-A nrPDB
Length = 566
Score = 34.2 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 395 LLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKF 454
W+ + +Y++F L +TL ++ F +++ Y G+++ G F
Sbjct: 384 FFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAIMFFIVFFAYAQLGYLLFGTQVENF 443
Query: 455 RSLSMVSECLFSLINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFI 514
+ F +I GD F A A + + +Y +++ +++L++F+
Sbjct: 444 STFVKCIFTQFRIILGD--FDYNAIDNANR-------ILGPVYFVTYVFFVFFVLLNMFL 494
Query: 515 ALITGAYDTIKHPGGTGTEKSELQAYIEQ 543
A+I Y +K ++ +L +++Q
Sbjct: 495 AIINDTYSEVKEELAGQKDQLQLSDFLKQ 523
>6DU8-A nrPDB
Length = 805
Score = 33.4 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 395 LLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKF 454
W+ + +Y++F L +TL ++ F +++ Y G+++ G F
Sbjct: 447 FFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAVMFFIVFFAYAQLGYLLFGTQVENF 506
Query: 455 RSLSMVSECLFSLINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFI 514
+ F +I GD + G + V +++ +++L++F+
Sbjct: 507 STFIKCIFTQFRIILGDFDYNAIDNANRILGPAYFV---------TYVFFVFFVLLNMFL 557
Query: 515 ALITGAYDTIKHPGGTGTEKSELQAYIEQ 543
A+I Y +K ++ +L ++Q
Sbjct: 558 AIINDTYSEVKEELAGQKDELQLSDLLKQ 586
>6E2G-A nrPDB
Length = 727
Score = 33.4 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 77/182 (42%), Gaps = 28/182 (15%)
Query: 354 WYILLVTSDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYN- 412
+++++VT + + VM+ L + D + + + +L W V+ + F
Sbjct: 424 FHVIIVTYAFMVLVTMVMR-------LTNSDGEVVPMSFALVLGWCNVMYFARGFQMLGP 476
Query: 413 ILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIV--------LGPYHVKFRSLSMVSECL 464
I ++ +MRFC +AV+ LG+ +I+ LG ++ +L E
Sbjct: 477 FTIMIQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPDELGHFYDYPMALFSTFELF 536
Query: 465 FSLINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTI 524
++I+G + L +++S Y +F + ++L+L IA++ + +
Sbjct: 537 LTIIDGPANY-----------DVDLPFMYSITYA-AFAIIATLLMLNLLIAMMGDTHWRV 584
Query: 525 KH 526
H
Sbjct: 585 AH 586
>6BOA-A nrPDB
Length = 742
Score = 32.6 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 35/181 (19%), Positives = 79/181 (43%), Gaps = 26/181 (14%)
Query: 354 WYILLVTSDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNI 413
+++L++T + + VM++ I A +++LG ++ + + L F
Sbjct: 425 FHVLIITYAFMVLVTMVMRL-ISASGEVVPMSFALVLGWCNVMYFAEGFQMLGPFT---- 479
Query: 414 LIATLRVALPSVMRFCCCVAVIYLGYCFCGWIV--------LGPYHVKFRSLSMVSECLF 465
I ++ +MRFC +AV+ LG+ +I+ LG ++ +L E
Sbjct: 480 -IMIQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPEELGHFYDYPMALFSTFELFL 538
Query: 466 SLINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIK 525
++I+G + + L +++S Y +F + ++L+L IA++ + +
Sbjct: 539 TIIDGPANY-----------NVDLPFMYSITYA-AFAIIATLLMLNLLIAMMGDTHWRVA 586
Query: 526 H 526
H
Sbjct: 587 H 587
>6DMR-A nrPDB
Length = 730
Score = 30.7 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 354 WYILLVTSDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYN- 412
++++++T L + VM+ L + + + L + +L W V+ + F
Sbjct: 425 FHVIIITYASLVLLTMVMR-------LTNMNGEVVPLSFALVLGWCSVMYFARGFQMLGP 477
Query: 413 ILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRS-----LSMVSECLFSL 467
I ++ +MRFC +AV+ LG+ +H+ F++ L S+ +L
Sbjct: 478 FTIMIQKMIFGDLMRFCWLMAVVILGFA-------SAFHITFQTEDPNNLGEFSDYPTAL 530
Query: 468 INGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKH 526
+ ++F+T A L +++ Y +F + ++L+LFIA++ + +
Sbjct: 531 FSTFELFLTIIDGPANYSVD-LPFMYCITYA-AFAIIATLLMLNLFIAMMGDTHWRVAQ 587
>4F86-A nrPDB
Length = 320
Score = 29.9 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 7 RRASETERLLTPNPGYG----TQVGTSPAPTTPTEEEDLR 42
R S P PG G T G PAP TP +E+ R
Sbjct: 16 PRGSHMAAASAPVPGPGGASSTARGRIPAPATPYQEDIAR 55
>6MVG-A nrPDB
Length = 777
Score = 29.9 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 80 LILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSD----DTFAAYTQEQLYQAIFYAVDQ 135
++++GLSN++ ++ + + H L + D T A + ++ +
Sbjct: 394 IVVWGLSNEITMSGEADEDLMENHHILNDLAHEMDPTRLTTMAVVSMCDMH-------NP 446
Query: 136 YLILPEISLGRYAYVRGGGGPWANGSAL 163
Y+ +P++ + + GG NG +
Sbjct: 447 YIQIPDVVSYNHYFGWYGGDTSMNGPWM 474
>6MVH-A nrPDB
Length = 780
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 80 LILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSD----DTFAAYTQEQLYQAIFYAVDQ 135
++++GLSN++ + + + H L D T A + ++ D
Sbjct: 394 IVVWGLSNEITMAGSSDEDLLENHRILNDMVHEMDHTRLTTIAVVSMCDIH-------DP 446
Query: 136 YLILPEISLGRYAYVRGGGGPWANGSAL 163
Y+ +P++ + + GG NG +
Sbjct: 447 YIQIPDVISYNHYFGWYGGDVSMNGPWM 474
>4QQS-A nrPDB
Length = 315
Score = 29.2 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 129 IFYAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPANDTFDIDPRV 188
+ Y+ + Y P+ S+G YA GPW S + + +G P +++ + P
Sbjct: 208 MMYSANCY-ASPDYSIG-YAVAETPLGPWIKYSGNPILSKRMDKGISGPGHNSVTVSPD- 264
Query: 189 VTDCIQVDPPDRPPDIPSEDLDF 211
++ V PD P D
Sbjct: 265 GSELFVVYHTHTYPDSPGGDRTV 287
>5ZYP-A nrPDB
Length = 390
Score = 29.2 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 153 GGGPWANGSALALCQRYYHRGHVDPANDTFDI 184
G P G+ LA + YY RGH D A +T D+
Sbjct: 132 GFDPTWIGNMLATVELYYQRGHYDKALETSDL 163
>3KW7-A nrPDB
Length = 502
Score = 28.8 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Query: 130 FYAVDQYLILPEI--SLGRY---AYVRGGGGPWANGSALALCQRYYHRGHVDP-ANDTFD 183
+A +Y + S+ Y A G G A+ RY VDP AN T
Sbjct: 238 IFASQRYSFVLNATQSVDNYWIRAIPNTGTIDTTGGLNSAIL-RYSGADIVDPTANATTS 296
Query: 184 IDPRVVTDCIQVDPPDRPPDIPSEDLDF---LDGSASYKNLTLKFHKLINVTIHFQLKTI 240
+ P V TD + +D P P D +D LD S + N + LI T+ L+ +
Sbjct: 297 VIPLVETDLVPLDSPAAPGDPVVGGVDLAMNLDFSFNGTNFFINNETLIPPTVPVLLQIL 356
Query: 241 NLQSLINNEIPDCYTFSI 258
+ ++ +P +++
Sbjct: 357 SGAQSASDLLPTGSVYTL 374
>3RSY-A nrPDB
Length = 822
Score = 28.8 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 135 QYLILPEISLGRYAYVRGGGGPWANG--SALALCQRYYHRGHVDPANDTFDIDPRVVTDC 192
+Y +P + GRY YV GG W A + R + + T + + V
Sbjct: 59 RYNNIPADAGGRYLYVNDGGDVWTPSWLPVKADLDHFEARHGLGYSTITGERNGVRVETL 118
Query: 193 IQVDPPDRPPDIPSEDLDFLDGSASYKNLTL 223
V + + + + + S SYK+LTL
Sbjct: 119 FFVPVGE---NAEVQKVTVTNTSDSYKSLTL 146
>5E1J-A nrPDB
Length = 741
Score = 28.4 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 26/145 (17%)
Query: 399 VGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLS 458
+ +IR L +Y IAT +PS+M + + + YC G V G ++
Sbjct: 539 LRLIRLLMNVQRYRAFIATFITLIPSLMPYLGTIFCVLCIYCSIGVQVFGGL------VN 592
Query: 459 MVSECLFSLINGDDMFVTFAAMQAQQGHSSL----------VWL----------FSQLYL 498
++ LF +D ++ F G +L VW+ +S Y
Sbjct: 593 AGNKKLFETELAEDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMESYKDLTGTWWSITYF 652
Query: 499 YSFISLFIYMVLSLFIALITGAYDT 523
SF + I ++L+L +A + A+ T
Sbjct: 653 VSFYVITILLLLNLVVAFVLEAFFT 677
>1ECF-A nrPDB
Length = 504
Score = 28.4 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 507 YMVLSLFIALITGAYDTIKH--PGGTGTEKSELQAYIEQCQDSPTS 550
YMV S +AL T +D ++ PG E Q + QC D+P S
Sbjct: 204 YMVASESVALDTLGFDFLRDVAPGEAIYITEEGQLFTRQCADNPVS 249
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.319 0.142 0.437
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,266,635
Number of Sequences: 36641
Number of extensions: 1121344
Number of successful extensions: 3326
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3265
Number of HSP's gapped (non-prelim): 48
length of query: 580
length of database: 10,336,785
effective HSP length: 102
effective length of query: 478
effective length of database: 6,599,403
effective search space: 3154514634
effective search space used: 3154514634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 62 (28.4 bits)