BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q99731
(98 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
2MP1-A nrPDB 163 1e-41
5EKI-A nrPDB 55 6e-09
2L4N-A nrPDB 55 8e-09
1G2S-A nrPDB 54 1e-08
1HA6-A nrPDB 54 2e-08
1EQT-A nrPDB 52 6e-08
2VXW-A nrPDB 50 1e-07
4ZKB-B nrPDB 50 2e-07
5UIW-B nrPDB 50 3e-07
2X6L-A nrPDB 49 5e-07
2HCC-A nrPDB 49 6e-07
2JYO-A nrPDB 48 8e-07
1HHV-A nrPDB 47 2e-06
4RWS-C nrPDB 46 3e-06
1ZXT-A nrPDB 46 3e-06
5YAM-A nrPDB 45 5e-06
4MHE-A nrPDB 45 6e-06
5LTL-A nrPDB 44 1e-05
1G91-A nrPDB 44 2e-05
1EIG-A nrPDB 44 2e-05
2RA4-A nrPDB 42 6e-05
1NR4-A nrPDB 42 6e-05
4ZLT-F nrPDB 42 6e-05
2Q8T-A nrPDB 41 1e-04
2Q8R-E nrPDB 41 1e-04
1ESR-A nrPDB 39 4e-04
1NCV-A nrPDB 39 5e-04
1J9O-A nrPDB 37 0.002
5WB2-B nrPDB 37 0.002
4XT3-B nrPDB 37 0.003
2MGS-A nrPDB 35 0.008
1DOL-A nrPDB 35 0.009
1EOT-A nrPDB 34 0.014
4XDX-A nrPDB 33 0.026
1F9P-A nrPDB 31 0.11
1ROD-A nrPDB 30 0.16
4R7H-A nrPDB 30 0.17
1NAP-A nrPDB 30 0.18
3KRL-A nrPDB 30 0.20
3BEA-A nrPDB 30 0.20
4OIK-A nrPDB 30 0.20
6GQK-A nrPDB 28 0.70
2OGV-A nrPDB 28 0.73
1MI2-A nrPDB 28 0.99
2FOM-B nrPDB 28 1.0
2M9Q-A nrPDB 28 1.1
5Y10-C nrPDB 28 1.3
3G0E-A nrPDB 27 1.5
5L7M-A nrPDB 26 4.0
2EDA-A nrPDB 25 7.7
>2MP1-A nrPDB
Length = 77
Score = 163 bits (413), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER
Sbjct: 1 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 60
Query: 82 IIQRLQRTSAKMKRRSS 98
IIQRLQRTSAKMKRRSS
Sbjct: 61 IIQRLQRTSAKMKRRSS 77
>5EKI-A nrPDB
Length = 79
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQ--LCAPPDQPWVERII 83
A+DCCL +Q+ IP +VR++ GC +PA++F + Q LCA P + WV++++
Sbjct: 5 AQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLM 64
Query: 84 QRLQRTSAKMK 94
Q L +T + K
Sbjct: 65 QHLDKTPSPQK 75
>2L4N-A nrPDB
Length = 113
Score = 54.7 bits (130), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQ--LCAPPDQPWVERII 83
A+DCCL +Q+ IP +VR++ GC +PA++F + Q LCA P + WV++++
Sbjct: 5 AQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLM 64
Query: 84 QRLQRTSAKMK 94
Q L +T + K
Sbjct: 65 QHLDKTPSPQK 75
>1G2S-A nrPDB
Length = 71
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G++ ++ CC + KP+P VR+ Y + C AV+FTT RG+++C P + WV++
Sbjct: 3 GSDISKTCCFQYSHKPLPWTWVRS--YEFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQK 60
Query: 82 IIQRLQ 87
I L+
Sbjct: 61 YISLLK 66
>1HA6-A nrPDB
Length = 70
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 28 DCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 87
DCCLS Q P+P + F + + C + A++F T + + +CA P Q WV+R + L
Sbjct: 5 DCCLSYIQTPLPSRAIVGFTRQMADEACDINAIIFHTKKRKSVCADPKQNWVKRAVNLLS 64
Query: 88 RTSAKM 93
KM
Sbjct: 65 LRVKKM 70
>1EQT-A nrPDB
Length = 68
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 20 LSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWV 79
+ ++D CC + +P+P ++ + Y K C PAVVF T + RQ+CA P++ WV
Sbjct: 1 MGYSSDTTPCCFAYIARPMPRAHIKEYFYTSGK--CSNPAVVFVTRKNRQVCANPEKKWV 58
Query: 80 ERIIQRLQ 87
I L+
Sbjct: 59 REYINSLE 66
>2VXW-A nrPDB
Length = 69
Score = 50.4 bits (119), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 23 TNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERI 82
++ + CC + +P+P ++ + Y K C PAVVF T + RQ+CA P++ WV
Sbjct: 5 SSQSSACCFAYIARPLPRAHIKEYFYTSGK--CSNPAVVFVTRKNRQVCANPEKKWVREY 62
Query: 83 IQRLQ 87
I L+
Sbjct: 63 INSLE 67
>4ZKB-B nrPDB
Length = 75
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 29 CCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 87
CC S T + IP + + Y C P V+F T R RQ+CA P + WV++ + L+
Sbjct: 10 CCFSYTSRQIPQNFIAD--YFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLE 66
>5UIW-B nrPDB
Length = 75
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 27 EDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
+ CC + +P+P ++ + Y C PAVVF T + RQ+CA P++ WV I L
Sbjct: 9 QSCCFAYIARPLPRAHIKEYFY--TSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSL 66
Query: 87 Q 87
+
Sbjct: 67 E 67
>2X6L-A nrPDB
Length = 69
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNF--HYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWV 79
G++ CC S T + +P RNF Y C PAVVF T R +Q+CA P + WV
Sbjct: 4 GSDPPTACCFSYTARKLP----RNFVVDYYETSSLCSQPAVVFQTKRSKQVCADPSESWV 59
Query: 80 ERIIQRLQ 87
+ + L+
Sbjct: 60 QEYVYDLE 67
>2HCC-A nrPDB
Length = 66
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
A DCC S + IP ++++ Y C P V+F T +GRQ+CA P P V+ +++
Sbjct: 3 AADCCTSYISQSIPCSLMKS--YFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKK 60
Query: 86 LQ 87
L+
Sbjct: 61 LK 62
>2JYO-A nrPDB
Length = 70
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 28 DCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 87
DCCL T + + + F L +GC + A++F T + +CA P Q WV+ I++ L
Sbjct: 5 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 64
Query: 88 RTSAKM 93
+ M
Sbjct: 65 KKVKNM 70
>1HHV-A nrPDB
Length = 74
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 27 EDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
+ CCL ++P+P ++ +++ C P V+F T RGRQ+CA + WV++++Q+L
Sbjct: 12 DKCCLGYQKRPLPQVLLSSWY--PTSQLCSKPGVIFLTKRGRQVCADKSKDWVKKLMQQL 69
Query: 87 QRTS 90
T+
Sbjct: 70 PVTA 73
>4RWS-C nrPDB
Length = 80
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 27 EDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
+ CCL ++P+P ++ +++ C P V+F T RGRQ+CA + WV++++Q+L
Sbjct: 9 DKCCLGYQKRPLPQVLLSSWY--PTSQLCSKPGVIFLTKRGRQVCADKSKDWVKKLMQQL 66
Query: 87 QRTS 90
T+
Sbjct: 67 PVTA 70
>1ZXT-A nrPDB
Length = 76
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 27 EDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
CC Q P P I++ ++ C P V+ T RGRQ+CA P + WV +++QRL
Sbjct: 9 NSCCYGFQQHPPPVQILKEWY--PTSPACPKPGVILLTKRGRQICADPSKNWVRQLMQRL 66
>5YAM-A nrPDB
Length = 69
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 24 NDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERII 83
+D CC + +P V+ + Y K C AVVF T R RQ+CA P++ WV+ I
Sbjct: 6 SDTTPCCFAYLSLALPRAHVKEYFYTSSK--CSNLAVVFVTRRNRQVCANPEKKWVQEYI 63
Query: 84 QRLQ 87
L+
Sbjct: 64 NYLE 67
>4MHE-A nrPDB
Length = 70
Score = 45.1 bits (105), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
GTN E CCL T IP + Y C P V+ T RGRQ+CA P++ WV++
Sbjct: 5 GTN-KELCCLVYTSWQIPQKFI--VDYSETSPQCPKPGVILLTKRGRQICADPNKKWVQK 61
Query: 82 IIQRLQ 87
I L+
Sbjct: 62 YISDLK 67
>5LTL-A nrPDB
Length = 100
Score = 44.3 bits (103), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 24 NDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERII 83
N CCL +K +P +V + L C +PA++F T R R++C P+ WV+ I
Sbjct: 12 NTPSTCCLKYYEKVLPRRLVVGYRKAL---NCHLPAIIFVTKRNREVCTNPNDDWVQEYI 68
Query: 84 Q 84
+
Sbjct: 69 K 69
>1G91-A nrPDB
Length = 77
Score = 43.5 bits (101), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
+ DCC+S T + IP ++ + Y C P V+F T +GR+ CA P V+ + R
Sbjct: 8 SADCCISYTPRSIPCSLLES--YFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ-VCMR 64
Query: 86 LQRTSAKMKRRSS 98
+ + ++K R +
Sbjct: 65 MLKLDTRIKTRKN 77
>1EIG-A nrPDB
Length = 73
Score = 43.5 bits (101), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 29 CCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQR 88
CC+ K IP V ++ L + C V+FTT +G+Q C P Q WV+R ++ L
Sbjct: 7 CCMFFVSKRIPENRVVSYQ-LSSRSTCLKAGVIFTTKKGQQSCGDPKQEWVQRYMKNL-- 63
Query: 89 TSAKMKRRS 97
AK K+ S
Sbjct: 64 -DAKQKKAS 71
>2RA4-A nrPDB
Length = 76
Score = 42.0 bits (97), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 24 NDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERII 83
N CC + + K I + R Y++ C AV+F T G+++CA P + WV+ +
Sbjct: 7 NVPSTCCFTFSSKKIS--LQRLKSYVITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYM 64
Query: 84 QRLQRTSAKMK 94
+ L R + +K
Sbjct: 65 KHLGRKAHTLK 75
>1NR4-A nrPDB
Length = 71
Score = 42.0 bits (97), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
GTN +CCL + IP ++ ++ + C A+VF T++GR +C+ P+ V+
Sbjct: 3 GTNVGRECCLEYFKGAIPLRKLKTWYQ--TSEDCSRDAIVFVTVQGRAICSDPNNKRVKN 60
Query: 82 IIQRLQ 87
++ LQ
Sbjct: 61 AVKYLQ 66
>4ZLT-F nrPDB
Length = 70
Score = 42.0 bits (97), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G + CC S ++K +IV Y C P V+F T R RQ+CA + WV+
Sbjct: 5 GADTPTACCFSYSRKIPRQFIV---AYFETSSLCSQPGVIFLTKRNRQICADSKETWVQE 61
Query: 82 IIQRLQ 87
I L+
Sbjct: 62 YITDLE 67
>2Q8T-A nrPDB
Length = 74
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 28 DCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 87
+CC + T IP R Y C P +VF T RG +C P WV+ I+ ++
Sbjct: 15 ECCFTYTTYKIPR--QRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMK 72
Query: 88 RT 89
Sbjct: 73 EN 74
>2Q8R-E nrPDB
Length = 66
Score = 40.8 bits (94), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G +CC + T IP R Y C P +VF T RG +C P WV+
Sbjct: 1 GPYHPSECCFTYTTYKIPR--QRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQD 58
Query: 82 IIQRLQRT 89
I+ ++
Sbjct: 59 YIKDMKEN 66
>1ESR-A nrPDB
Length = 76
Score = 39.3 bits (90), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 29 CCLSVTQKPIPGYIVRNFHYLLIKD-GCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 87
CC +V + IP I R Y I + C AV+F T RG+++CA P + WV ++ L
Sbjct: 11 CCFNVINRKIP--IQRLESYTRITNIQCPKEAVIFKTQRGKEVCADPKERWVRDSMKHLD 68
Query: 88 RTSAKMK 94
+ +K
Sbjct: 69 QIFQNLK 75
>1NCV-A nrPDB
Length = 76
Score = 38.9 bits (89), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G N + CC K IP + ++ C AV+F T +++CA P Q WV+
Sbjct: 4 GINTSTTCCYRFINKKIPKQRLESYR-RTTSSHCPREAVIFKTKLDKEICADPTQKWVQD 62
Query: 82 IIQRLQRTS 90
++ L + +
Sbjct: 63 FMKHLDKKT 71
>1J9O-A nrPDB
Length = 93
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C+S+T + +P + R Y + + R AV+F T RG ++CA P WV +++ + R
Sbjct: 11 CVSLTTQRLP--VSRIKTYTITEGSLR--AVIFITKRGLKVCADPQATWVRDVVRSMDRK 66
Query: 90 S 90
S
Sbjct: 67 S 67
>5WB2-B nrPDB
Length = 76
Score = 36.6 bits (83), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 46 FHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKR 95
HY + C A++ T + R CA P + WV+ +Q L R +A + R
Sbjct: 25 IHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTR 74
>4XT3-B nrPDB
Length = 91
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 46 FHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKR 95
HY + C A++ T + R CA P + WV+ +Q L R +A + R
Sbjct: 25 IHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTR 74
>2MGS-A nrPDB
Length = 78
Score = 35.0 bits (79), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
CL TQ P ++ N I C VV + G+++C P+ P+++++IQ++
Sbjct: 15 CLQTTQGVHP-KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKI 70
>1DOL-A nrPDB
Length = 77
Score = 34.7 bits (78), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 29 CCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQR 88
CC + T + I + ++ + C AV+F T+ +++CA P Q WV+ + L +
Sbjct: 12 CCYNFTNRKISVQRLASYR-RITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDK 70
Query: 89 TS 90
+
Sbjct: 71 QT 72
>1EOT-A nrPDB
Length = 74
Score = 33.9 bits (76), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 29 CCLSVTQKPIPGYIVRNFHYLLIKDG-CRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 87
CC ++ + IP + R Y I G C AV+F T + +CA P + WV+ ++ L
Sbjct: 9 CCFNLANRKIP--LQRLESYRRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDSMKYLD 66
Query: 88 RTS 90
+ S
Sbjct: 67 QKS 69
>4XDX-A nrPDB
Length = 70
Score = 33.1 bits (74), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
C+ KP ++ + C ++ GR+LC P + WV+R++++
Sbjct: 7 CIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKF 63
>1F9P-A nrPDB
Length = 85
Score = 31.2 bits (69), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 55 CRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
C V+ T GR++C PD P +++I+Q+
Sbjct: 46 CNQVEVIATLKDGRKICLDPDAPRIKKIVQK 76
>1ROD-A nrPDB
Length = 72
Score = 30.4 bits (67), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
C+ KP ++ + C ++ GR+LC P P V++II+++
Sbjct: 9 CIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPASPIVKKIIEKM 65
>4R7H-A nrPDB
Length = 343
Score = 30.4 bits (67), Expect = 0.17, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 31 LSVTQKPIPGYIVRNFHYLLIKDGCRV------PAVVFTTLRGRQLCAPPDQPWVERIIQ 84
S+ P PG +V + Y L+KDG ++ P +++ ++ P +P ++I
Sbjct: 273 FSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQITS 332
Query: 85 RLQRTSAKMKR 95
LQ + + +R
Sbjct: 333 FLQEQAQEDRR 343
>1NAP-A nrPDB
Length = 70
Score = 30.4 bits (67), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 55 CRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
C V+ T GR++C PD P +++I+Q+
Sbjct: 31 CNQVEVIATLKDGRKICLDPDAPRIKKIVQK 61
>3KRL-A nrPDB
Length = 335
Score = 30.4 bits (67), Expect = 0.20, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 31 LSVTQKPIPGYIVRNFHYLLIKDGCRV------PAVVFTTLRGRQLCAPPDQPWVERIIQ 84
S+ P PG +V + Y L+KDG ++ P +++ ++ P +P ++I
Sbjct: 262 FSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS 321
Query: 85 RLQRTSAKMKR 95
LQ + + +R
Sbjct: 322 FLQEQAQEDRR 332
>3BEA-A nrPDB
Length = 333
Score = 30.4 bits (67), Expect = 0.20, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 31 LSVTQKPIPGYIVRNFHYLLIKDGCRV------PAVVFTTLRGRQLCAPPDQPWVERIIQ 84
S+ P PG +V + Y L+KDG ++ P +++ ++ P +P ++I
Sbjct: 260 FSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS 319
Query: 85 RLQRTSAKMKR 95
LQ + + +R
Sbjct: 320 FLQEQAQEDRR 330
>4OIK-A nrPDB
Length = 74
Score = 30.0 bits (66), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 29 CCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQR 88
CC S ++ IP + Y C ++F RG++ CA WV+R + L+
Sbjct: 11 CCFSFAEQEIPLRAI--LCYRNTSSICSNEGLIFKLKRGKEACALDTVGWVQRHRKMLRH 68
Query: 89 TSAKMK 94
+K K
Sbjct: 69 CPSKRK 74
>6GQK-A nrPDB
Length = 328
Score = 28.5 bits (62), Expect = 0.70, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 31 LSVTQKPIPGYIVRNFHYLLIKDGCRV------PAVVFTTLRGRQLCAPPDQPWVERIIQ 84
S+ P PG V + Y +IK+G R+ PA ++ ++ P +P ++I+Q
Sbjct: 257 FSLGSSPYPGMPVDSKFYKMIKEGFRMSSPEYAPAEMYDIMKTCWDADPDKRPTFKQIVQ 316
Query: 85 RLQR 88
+++
Sbjct: 317 DIEK 320
>2OGV-A nrPDB
Length = 317
Score = 28.5 bits (62), Expect = 0.73, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 31 LSVTQKPIPGYIVRNFHYLLIKDGCRV------PAVVFTTLRGRQLCAPPDQPWVERIIQ 84
S+ P PG +V + Y L+KDG ++ P +++ ++ P +P ++I
Sbjct: 248 FSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS 307
Query: 85 RLQRTS 90
LQ +
Sbjct: 308 FLQEQA 313
>1MI2-A nrPDB
Length = 73
Score = 28.1 bits (61), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 55 CRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
C V+ T G+++C P+ P V++IIQ++
Sbjct: 35 CAQTEVIATLKGGQKVCLDPEAPLVQKIIQKI 66
>2FOM-B nrPDB
Length = 185
Score = 27.7 bits (60), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 11 VLWTSPAPTLSGTNDAEDCCLSVTQKPIPGY 41
VLW P+P G + ED + QK I GY
Sbjct: 3 VLWDVPSPPPVGKAELEDGAYRIKQKGILGY 33
>2M9Q-A nrPDB
Length = 240
Score = 27.7 bits (60), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 11 VLWTSPAPTLSGTNDAEDCCLSVTQKPIPGY 41
VLW P+P G + ED + QK I GY
Sbjct: 64 VLWDVPSPPPVGKAELEDGAYRIKQKGILGY 94
>5Y10-C nrPDB
Length = 321
Score = 27.7 bits (60), Expect = 1.3, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 30 CLSVTQKPIPGYI-VRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVE-----RII 83
C +T P ++ +++F D C++ +VF G L P D W++ +II
Sbjct: 161 CQPMTPIPEETFLELKSFSQSEFPDICKIDGIVFNQCEGESLPQPFDVAWMDVGHSHKII 220
Query: 84 QRLQRT 89
R +T
Sbjct: 221 MREHKT 226
>3G0E-A nrPDB
Length = 336
Score = 27.3 bits (59), Expect = 1.5, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 31 LSVTQKPIPGYIVRNFHYLLIKDGCRV------PAVVFTTLRGRQLCAPPDQPWVERIIQ 84
S+ P PG V + Y +IK+G R+ PA ++ ++ P +P ++I+Q
Sbjct: 264 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 323
Query: 85 RLQR 88
+++
Sbjct: 324 LIEK 327
>5L7M-A nrPDB
Length = 88
Score = 25.8 bits (55), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 53 DGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTS 90
+GC VV T + +C P W++R+++ +Q S
Sbjct: 36 NGCPKTEVVIWTKMKKVICVNPRAKWLQRLLRHVQSKS 73
>2EDA-A nrPDB
Length = 310
Score = 25.0 bits (53), Expect = 7.7, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVF 62
G +DAED L + +P Y+ R + + G RV A F
Sbjct: 42 GNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDF 82
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
2MP1-A nrPDB 106 3e-24
2Q8R-E nrPDB 99 5e-22
1EQT-A nrPDB 98 8e-22
4ZKB-B nrPDB 97 1e-21
2Q8T-A nrPDB 97 1e-21
2X6L-A nrPDB 96 3e-21
4ZLT-F nrPDB 94 1e-20
5UIW-B nrPDB 93 3e-20
2VXW-A nrPDB 92 4e-20
1NCV-A nrPDB 90 2e-19
2RA4-A nrPDB 90 2e-19
5YAM-A nrPDB 89 3e-19
5EKI-A nrPDB 88 9e-19
1ESR-A nrPDB 88 9e-19
4MHE-A nrPDB 88 9e-19
1G91-A nrPDB 87 2e-18
2JYO-A nrPDB 86 3e-18
1HA6-A nrPDB 85 5e-18
2L4N-A nrPDB 85 7e-18
1ZXT-A nrPDB 84 1e-17
1HHV-A nrPDB 84 2e-17
1G2S-A nrPDB 83 2e-17
4RWS-C nrPDB 83 2e-17
5LTL-A nrPDB 82 4e-17
2HCC-A nrPDB 81 1e-16
1NR4-A nrPDB 79 3e-16
1EIG-A nrPDB 79 4e-16
1J9O-A nrPDB 65 5e-12
Sequences not found previously or not previously below threshold:
1EOT-A nrPDB 78 7e-16
1DOL-A nrPDB 78 1e-15
4XT3-B nrPDB 59 6e-10
5WB2-B nrPDB 57 1e-09
4OIK-A nrPDB 54 1e-08
4XDX-A nrPDB 50 2e-07
5L7M-A nrPDB 42 5e-05
5CBA-E nrPDB 42 7e-05
1ROD-A nrPDB 40 2e-04
6CWS-A nrPDB 37 0.002
2MGS-A nrPDB 37 0.002
1PLF-A nrPDB 36 0.003
4HCS-A nrPDB 35 0.005
1MI2-A nrPDB 34 0.013
1F9P-A nrPDB 34 0.018
6EHZ-A nrPDB 33 0.026
1NAP-A nrPDB 33 0.032
1MSH-A nrPDB 33 0.040
4LMQ-D nrPDB 32 0.041
2K04-A nrPDB 31 0.12
5OB5-A nrPDB 31 0.14
2N55-A nrPDB 30 0.19
1LV9-A nrPDB 30 0.30
1RJT-A nrPDB 30 0.33
2R3Z-A nrPDB 29 0.51
1PFN-A nrPDB 28 0.90
5DWV-A nrPDB 27 1.3
3NR5-A nrPDB 26 4.0
2A6A-A nrPDB 25 5.0
5ZDH-P nrPDB 25 9.4
>2MP1-A nrPDB
Length = 77
Score = 106 bits (264), Expect = 3e-24, Method: Composition-based stats.
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER
Sbjct: 1 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 60
Query: 82 IIQRLQRTSAKMKRRSS 98
IIQRLQRTSAKMKRRSS
Sbjct: 61 IIQRLQRTSAKMKRRSS 77
>2Q8R-E nrPDB
Length = 66
Score = 98.6 bits (244), Expect = 5e-22, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G +CC + T IP R Y C P +VF T RG +C P WV+
Sbjct: 1 GPYHPSECCFTYTTYKIPR--QRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQD 58
Query: 82 IIQRLQRT 89
I+ ++
Sbjct: 59 YIKDMKEN 66
>1EQT-A nrPDB
Length = 68
Score = 97.8 bits (242), Expect = 8e-22, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 20 LSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWV 79
+ ++D CC + +P+P ++ + Y C PAVVF T + RQ+CA P++ WV
Sbjct: 1 MGYSSDTTPCCFAYIARPMPRAHIKEYFY--TSGKCSNPAVVFVTRKNRQVCANPEKKWV 58
Query: 80 ERIIQRLQ 87
I L+
Sbjct: 59 REYINSLE 66
>4ZKB-B nrPDB
Length = 75
Score = 97.5 bits (241), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 23 TNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERI 82
+ CC S T + IP + Y C P V+F T R RQ+CA P + WV++
Sbjct: 4 ADTPTACCFSYTSRQIPQNFIA--DYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKY 61
Query: 83 IQRLQRTS 90
+ L+ ++
Sbjct: 62 VSDLELSA 69
>2Q8T-A nrPDB
Length = 74
Score = 97.1 bits (240), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G +CC + T IP R Y C P +VF T RG +C P WV+
Sbjct: 9 GPYHPSECCFTYTTYKIPR--QRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQD 66
Query: 82 IIQRLQRT 89
I+ ++
Sbjct: 67 YIKDMKEN 74
>2X6L-A nrPDB
Length = 69
Score = 95.9 bits (237), Expect = 3e-21, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G++ CC S T + +P V Y C PAVVF T R +Q+CA P + WV+
Sbjct: 4 GSDPPTACCFSYTARKLPRNFVV--DYYETSSLCSQPAVVFQTKRSKQVCADPSESWVQE 61
Query: 82 IIQRLQRT 89
+ L+
Sbjct: 62 YVYDLELN 69
>4ZLT-F nrPDB
Length = 70
Score = 94.4 bits (233), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G + CC S + IP + Y C P V+F T R RQ+CA + WV+
Sbjct: 5 GADTPTACCFSY-SRKIPRQFIVA--YFETSSLCSQPGVIFLTKRNRQICADSKETWVQE 61
Query: 82 IIQRLQRTS 90
I L+ +
Sbjct: 62 YITDLELNA 70
>5UIW-B nrPDB
Length = 75
Score = 92.8 bits (229), Expect = 3e-20, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 27 EDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
+ CC + +P+P ++ + Y C PAVVF T + RQ+CA P++ WV I L
Sbjct: 9 QSCCFAYIARPLPRAHIKEYFY--TSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSL 66
Query: 87 Q 87
+
Sbjct: 67 E 67
>2VXW-A nrPDB
Length = 69
Score = 92.5 bits (228), Expect = 4e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 23 TNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERI 82
++ + CC + +P+P ++ + Y C PAVVF T + RQ+CA P++ WV
Sbjct: 5 SSQSSACCFAYIARPLPRAHIKEYFY--TSGKCSNPAVVFVTRKNRQVCANPEKKWVREY 62
Query: 83 IQRLQ 87
I L+
Sbjct: 63 INSLE 67
>1NCV-A nrPDB
Length = 76
Score = 90.1 bits (222), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G N + CC K IP + ++ C AV+F T +++CA P Q WV+
Sbjct: 4 GINTSTTCCYRFINKKIPKQRLESYRRT-TSSHCPREAVIFKTKLDKEICADPTQKWVQD 62
Query: 82 IIQRLQRTSAKMK 94
++ L + + K
Sbjct: 63 FMKHLDKKTQTPK 75
>2RA4-A nrPDB
Length = 76
Score = 90.1 bits (222), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 24 NDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERII 83
N CC + + K I + R Y++ C AV+F T G+++CA P + WV+ +
Sbjct: 7 NVPSTCCFTFSSKKI--SLQRLKSYVITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYM 64
Query: 84 QRLQRTSAKMKR 95
+ L R + +K
Sbjct: 65 KHLGRKAHTLKT 76
>5YAM-A nrPDB
Length = 69
Score = 89.4 bits (220), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
+D CC + +P V+ + Y C AVVF T R RQ+CA P++ WV+
Sbjct: 4 YGSDTTPCCFAYLSLALPRAHVKEYFY--TSSKCSNLAVVFVTRRNRQVCANPEKKWVQE 61
Query: 82 IIQRLQ 87
I L+
Sbjct: 62 YINYLE 67
>5EKI-A nrPDB
Length = 79
Score = 87.8 bits (216), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQ--LCAPPDQPWVERII 83
A+DCCL +Q+ IP +VR++ GC +PA++F + Q LCA P + WV++++
Sbjct: 5 AQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLM 64
Query: 84 QRLQRTSAKMKRRS 97
Q L +T + K
Sbjct: 65 QHLDKTPSPQKPAQ 78
>1ESR-A nrPDB
Length = 76
Score = 87.8 bits (216), Expect = 9e-19, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 24 NDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERII 83
+ CC +V + IP + ++ + C AV+F T RG+++CA P + WV +
Sbjct: 6 SIPITCCFNVINRKIPIQRLESYTR-ITNIQCPKEAVIFKTQRGKEVCADPKERWVRDSM 64
Query: 84 QRLQRTSAKMK 94
+ L + +K
Sbjct: 65 KHLDQIFQNLK 75
>4MHE-A nrPDB
Length = 70
Score = 87.8 bits (216), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
GTN E CCL T IP + Y C P V+ T RGRQ+CA P++ WV++
Sbjct: 5 GTN-KELCCLVYTSWQIPQKFIV--DYSETSPQCPKPGVILLTKRGRQICADPNKKWVQK 61
Query: 82 IIQRLQRTS 90
I L+ +
Sbjct: 62 YISDLKLNA 70
>1G91-A nrPDB
Length = 77
Score = 86.7 bits (213), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 25 DAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQ 84
+ DCC+S T + IP ++ + Y C P V+F T +GR+ CA P V+ ++
Sbjct: 7 TSADCCISYTPRSIPCSLLES--YFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCMR 64
Query: 85 RLQRTSAKMKRRSS 98
L + ++K R +
Sbjct: 65 ML-KLDTRIKTRKN 77
>2JYO-A nrPDB
Length = 70
Score = 86.3 bits (212), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 28 DCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 87
DCCL T + + + F L +GC + A++F T + +CA P Q WV+ I++ L
Sbjct: 5 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 64
Query: 88 RTSAKM 93
+ M
Sbjct: 65 KKVKNM 70
>1HA6-A nrPDB
Length = 70
Score = 85.1 bits (209), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 28 DCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 87
DCCLS Q P+P + F + + C + A++F T + + +CA P Q WV+R + L
Sbjct: 5 DCCLSYIQTPLPSRAIVGFTRQMADEACDINAIIFHTKKRKSVCADPKQNWVKRAVNLLS 64
Query: 88 RTSAKM 93
KM
Sbjct: 65 LRVKKM 70
>2L4N-A nrPDB
Length = 113
Score = 85.1 bits (209), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQ--LCAPPDQPWVERII 83
A+DCCL +Q+ IP +VR++ GC +PA++F + Q LCA P + WV++++
Sbjct: 5 AQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLM 64
Query: 84 QRLQRTSAKMKRRS 97
Q L +T + K
Sbjct: 65 QHLDKTPSPQKPAQ 78
>1ZXT-A nrPDB
Length = 76
Score = 84.0 bits (206), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 23 TNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERI 82
+ CC Q P P I++ ++ C P V+ T RGRQ+CA P + WV ++
Sbjct: 5 SYTPNSCCYGFQQHPPPVQILKEWY--PTSPACPKPGVILLTKRGRQICADPSKNWVRQL 62
Query: 83 IQRLQ 87
+QRL
Sbjct: 63 MQRLP 67
>1HHV-A nrPDB
Length = 74
Score = 83.6 bits (205), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
+ CCL ++P+P ++ +++ C P V+F T RGRQ+CA + WV++++Q+
Sbjct: 11 PDKCCLGYQKRPLPQVLLSSWY--PTSQLCSKPGVIFLTKRGRQVCADKSKDWVKKLMQQ 68
Query: 86 LQRTSA 91
L T+
Sbjct: 69 LPVTAR 74
>1G2S-A nrPDB
Length = 71
Score = 83.2 bits (204), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
G++ ++ CC + KP+P VR+ Y + C AV+FTT RG+++C P + WV++
Sbjct: 3 GSDISKTCCFQYSHKPLPWTWVRS--YEFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQK 60
Query: 82 IIQRLQ 87
I L+
Sbjct: 61 YISLLK 66
>4RWS-C nrPDB
Length = 80
Score = 83.2 bits (204), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
+ CCL ++P+P ++ +++ C P V+F T RGRQ+CA + WV++++Q+
Sbjct: 8 PDKCCLGYQKRPLPQVLLSSWY--PTSQLCSKPGVIFLTKRGRQVCADKSKDWVKKLMQQ 65
Query: 86 LQRTSA 91
L T+
Sbjct: 66 LPVTAR 71
>5LTL-A nrPDB
Length = 100
Score = 82.4 bits (202), Expect = 4e-17, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 24 NDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERII 83
N CCL +K +P +V + L C +PA++F T R R++C P+ WV+ I
Sbjct: 12 NTPSTCCLKYYEKVLPRRLVVGYRKAL---NCHLPAIIFVTKRNREVCTNPNDDWVQEYI 68
Query: 84 QR 85
+
Sbjct: 69 KD 70
>2HCC-A nrPDB
Length = 66
Score = 80.9 bits (198), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 26 AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
A DCC S + IP ++++ Y C P V+F T +GRQ+CA P P V+ +++
Sbjct: 3 AADCCTSYISQSIPCSLMKS--YFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKK 60
Query: 86 LQ 87
L+
Sbjct: 61 LK 62
>1NR4-A nrPDB
Length = 71
Score = 79.4 bits (194), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 22 GTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
GTN +CCL + IP ++ ++ + C A+VF T++GR +C+ P+ V+
Sbjct: 3 GTNVGRECCLEYFKGAIPLRKLKTWYQ--TSEDCSRDAIVFVTVQGRAICSDPNNKRVKN 60
Query: 82 IIQRLQ 87
++ LQ
Sbjct: 61 AVKYLQ 66
>1EIG-A nrPDB
Length = 73
Score = 79.0 bits (193), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 25 DAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQ 84
CC+ K IP V ++ L + C V+FTT +G+Q C P Q WV+R ++
Sbjct: 3 IPSPCCMFFVSKRIPENRVVSY-QLSSRSTCLKAGVIFTTKKGQQSCGDPKQEWVQRYMK 61
Query: 85 RLQRTSAKMKRR 96
L K R
Sbjct: 62 NLDAKQKKASPR 73
>1EOT-A nrPDB
Length = 74
Score = 78.2 bits (191), Expect = 7e-16, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 21 SGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVE 80
+ CC ++ + IP + ++ + C AV+F T + +CA P + WV+
Sbjct: 1 GPASVPTTCCFNLANRKIPLQRLESYRR-ITSGKCPQKAVIFKTKLAKDICADPKKKWVQ 59
Query: 81 RIIQRLQRTSAKMK 94
++ L + S K
Sbjct: 60 DSMKYLDQKSPTPK 73
>1DOL-A nrPDB
Length = 77
Score = 77.8 bits (190), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 23 TNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERI 82
N CC + T + I + ++ + C AV+F T+ +++CA P Q WV+
Sbjct: 6 INAPVTCCYNFTNRKISVQRLASYRR-ITSSKCPKEAVIFKTIVAKEICADPKQKWVQDS 64
Query: 83 IQRLQRTSAKMKR 95
+ L + + K
Sbjct: 65 MDHLDKQTQTPKT 77
>1J9O-A nrPDB
Length = 93
Score = 65.5 bits (158), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C+S+T + +P ++ + + AV+F T RG ++CA P WV +++ + R
Sbjct: 11 CVSLTTQRLPVSRIKTYTITEG----SLRAVIFITKRGLKVCADPQATWVRDVVRSMDRK 66
Query: 90 SAK 92
S
Sbjct: 67 SNT 69
>4XT3-B nrPDB
Length = 91
Score = 58.6 bits (140), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C +T K IP ++ HY + C A++ T + R CA P + WV+ +Q L R
Sbjct: 12 CSKMTSK-IPVALL--IHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQ 68
Query: 90 SAKMKR 95
+A + R
Sbjct: 69 AAALTR 74
>5WB2-B nrPDB
Length = 76
Score = 57.4 bits (137), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C +T K IP ++ HY + C A++ T + R CA P + WV+ +Q L R
Sbjct: 12 CSKMTSK-IPVALL--IHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQ 68
Query: 90 SAKMKR 95
+A + R
Sbjct: 69 AAALTR 74
>4OIK-A nrPDB
Length = 74
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 27 EDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
CC S ++ IP + Y C ++F RG++ CA WV+R + L
Sbjct: 9 SRCCFSFAEQEIPLRAI--LCYRNTSSICSNEGLIFKLKRGKEACALDTVGWVQRHRKML 66
Query: 87 QRTSAKMK 94
+ +K K
Sbjct: 67 RHCPSKRK 74
>4XDX-A nrPDB
Length = 70
Score = 50.5 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C+ KP ++ + C ++ GR+LC P + WV+R++++ +
Sbjct: 7 CIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKR 66
Query: 90 SAK 92
+
Sbjct: 67 AEN 69
>5L7M-A nrPDB
Length = 88
Score = 42.0 bits (97), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C V + I+ +GC VV T + +C P W++R+++ +Q
Sbjct: 13 CSGVISTVVGLNIIDRIQVTPPGNGCPKTEVVIWTKMKKVICVNPRAKWLQRLLRHVQSK 72
Query: 90 S 90
S
Sbjct: 73 S 73
>5CBA-E nrPDB
Length = 88
Score = 42.0 bits (97), Expect = 7e-05, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C+ + IP + L +GC ++ +C P W++R+++ L++
Sbjct: 14 CVQESSVFIPRRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKR 73
Query: 90 SA 91
S+
Sbjct: 74 SS 75
>1ROD-A nrPDB
Length = 72
Score = 40.1 bits (92), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C+ KP ++ + C ++ GR+LC P P V++II+++ +
Sbjct: 9 CIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPASPIVKKIIEKMLNS 68
Query: 90 SA 91
Sbjct: 69 DK 70
>6CWS-A nrPDB
Length = 108
Score = 37.0 bits (84), Expect = 0.002, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 25 DAEDCCLSVTQKPIPGYIVRNF---HYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVER 81
A CC V+ I ++ C + AV+ R R +C P V++
Sbjct: 7 IASSCCTEVSHH-ISRRLLERVNMCRIQRADGDCDLAAVILHVKRRR-ICVSPHNHTVKQ 64
Query: 82 IIQ 84
++
Sbjct: 65 WMK 67
>2MGS-A nrPDB
Length = 78
Score = 37.0 bits (84), Expect = 0.002, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
CL T + + ++ N I C VV + G+++C P+ P+++++IQ++
Sbjct: 15 CLQ-TTQGVHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKI 70
>1PLF-A nrPDB
Length = 72
Score = 36.2 bits (82), Expect = 0.003, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 21 SGTNDAEDC-CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWV 79
G ++ C CL T P + + + C P ++ T GR++C P
Sbjct: 4 GGEDEDLQCVCLKTTSGINPR-HISSLEVIGAGLHCPSPQLIATLKTGRKICLDQQNPLY 62
Query: 80 ERIIQRLQR 88
++II+RL +
Sbjct: 63 KKIIKRLLK 71
>4HCS-A nrPDB
Length = 81
Score = 35.4 bits (80), Expect = 0.005, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
C V P ++ + L + C V+F R C P+ W+ + RL+
Sbjct: 15 CFKVLTTKEPKANIKRCYNLPKTNNCLK-CVLFVDASNRMKCIDPNASWLAERLYRLKEK 73
>1MI2-A nrPDB
Length = 73
Score = 34.3 bits (77), Expect = 0.013, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 36 KPIPG---YIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSA 91
K +P +++ C V+ T G+++C P+ P V++IIQ++
Sbjct: 13 KTLPRVDFKNIQSLSVTPPGPHCAQTEVIATLKGGQKVCLDPEAPLVQKIIQKILNKGK 71
>1F9P-A nrPDB
Length = 85
Score = 33.9 bits (76), Expect = 0.018, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
C+ T P I C V+ T GR++C PD P +++I+Q+
Sbjct: 22 CIKTTSGIHPKNIQSLEVIGKGT-HCNQVEVIATLKDGRKICLDPDAPRIKKIVQK 76
>6EHZ-A nrPDB
Length = 98
Score = 33.1 bits (74), Expect = 0.026, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 29 CCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
C + I V++ L C + V RQ+C P W++ +++
Sbjct: 9 CPCRFFESHIARANVKHLKILNT-PNCALQIVARLKNNNRQVCIDPKLKWIQEYLEK 64
>1NAP-A nrPDB
Length = 70
Score = 32.7 bits (73), Expect = 0.032, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
C+ T P I C V+ T GR++C PD P +++I+Q+
Sbjct: 7 CIKTTSGIHPKNIQSLEVIGKGT-HCNQVEVIATLKDGRKICLDPDAPRIKKIVQK 61
>1MSH-A nrPDB
Length = 72
Score = 32.7 bits (73), Expect = 0.040, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRT 89
CL T + I +++ + C V+ T GR+ C P P V++II+++ +
Sbjct: 11 CLQ-TLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNS 69
Query: 90 SA 91
Sbjct: 70 DK 71
>4LMQ-D nrPDB
Length = 61
Score = 32.4 bits (72), Expect = 0.041, Method: Composition-based stats.
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 52 KDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
C + V RQ+C P W++ +++
Sbjct: 24 TPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEK 57
>2K04-A nrPDB
Length = 70
Score = 30.8 bits (68), Expect = 0.12, Method: Composition-based stats.
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 52 KDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
C V RQ+C P W++ +++
Sbjct: 33 TPNCACQIVARLKNNNRQVCIDPKLKWIQEYLEK 66
>5OB5-A nrPDB
Length = 63
Score = 30.8 bits (68), Expect = 0.14, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQR 88
CL T + I +++ C V+ T G++ C P P V++II+++ +
Sbjct: 6 CLQ-TLQGIHLKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLK 63
>2N55-A nrPDB
Length = 70
Score = 30.4 bits (67), Expect = 0.19, Method: Composition-based stats.
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 52 KDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
C + V RQ+C P W + +++
Sbjct: 33 TPNCALQIVARLKNNNRQVCIDPKCKWCQEYLEK 66
>1LV9-A nrPDB
Length = 77
Score = 29.7 bits (65), Expect = 0.30, Method: Composition-based stats.
Identities = 9/64 (14%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFT-TLRGRQLCAPPDQPWVERIIQRLQR 88
C+S++ +P+ + + C ++ T +G + C P+ ++ +++ + +
Sbjct: 11 CISISNQPVNPRSLEKLEIIPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSK 70
Query: 89 TSAK 92
+K
Sbjct: 71 EMSK 74
>1RJT-A nrPDB
Length = 73
Score = 29.7 bits (65), Expect = 0.33, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGR-QLCAPPDQPWVERIIQRLQR 88
C+ K + + + + C V+ T + Q C P II++++R
Sbjct: 11 CIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVER 70
Query: 89 T 89
Sbjct: 71 K 71
>2R3Z-A nrPDB
Length = 68
Score = 28.9 bits (63), Expect = 0.51, Method: Composition-based stats.
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRG-RQLCAPPDQPWVERIIQ 84
C+ + P+ + + C ++ T + Q C P+ ++ +++
Sbjct: 11 CIHIDDGPVRMRAIGKLEIIPASLSCPRVEIIATMKKNDEQRCLNPESKTIKNLMK 66
>1PFN-A nrPDB
Length = 68
Score = 28.1 bits (61), Expect = 0.90, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 30 CLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
C+ T + P + + + C ++ T GR++C P ++II++L
Sbjct: 10 CVKTTSQVRPR-HITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKL 65
>5DWV-A nrPDB
Length = 573
Score = 27.4 bits (59), Expect = 1.3, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 39 PGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQ 69
P + N LL P VVF + +G Q
Sbjct: 127 PANDIYNERELLNSMNISQPTVVFVSKKGLQ 157
>3NR5-A nrPDB
Length = 164
Score = 25.8 bits (55), Expect = 4.0, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 32 SVTQKPIPGYIVR--NFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQ 84
S + KP+ R F+ + + P F+T R + P WV +
Sbjct: 37 SYSCKPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLSWVVNAVN 91
>2A6A-A nrPDB
Length = 218
Score = 25.4 bits (54), Expect = 5.0, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 33 VTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQ---LCA 72
V+ IP + +F + C VV R R+ CA
Sbjct: 93 VSPYDIPVAPLNSF--EMTAKSCPADGVVLVARRARKGYHYCA 133
>5ZDH-P nrPDB
Length = 112
Score = 24.7 bits (52), Expect = 9.4, Method: Composition-based stats.
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 62 FTTLRGRQLCAPPDQP 77
F T RQ+CA P
Sbjct: 61 FLTSYQRQMCADPTVK 76
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.132 0.416
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,739,023
Number of Sequences: 36641
Number of extensions: 125331
Number of successful extensions: 509
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 115
length of query: 98
length of database: 10,336,785
effective HSP length: 66
effective length of query: 32
effective length of database: 7,918,479
effective search space: 253391328
effective search space used: 253391328
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 52 (24.7 bits)