BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q96Q11 (434 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4X4W-A nrPDB 837 0.0 6IBP-A nrPDB 124 9e-29 1MIW-A nrPDB 105 4e-23 3AQL-A nrPDB 93 3e-19 4WBY-A nrPDB 72 4e-13 3H3A-A nrPDB 69 5e-12 3WFS-C nrPDB 40 0.002 3WFO-A nrPDB 40 0.002 2O06-A nrPDB 31 0.97 3VR3-D nrPDB 30 1.4 1LW3-A nrPDB 30 2.8 3OVQ-A nrPDB 28 6.0 >4X4W-A nrPDB Length = 416 Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/408 (99%), Positives = 408/408 (100%) Query: 27 LFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATP 86 +FTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATP Sbjct: 1 MFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATP 60 Query: 87 TQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQK 146 TQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQK Sbjct: 61 TQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQK 120 Query: 147 DAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYG 206 DAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYG Sbjct: 121 DAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYG 180 Query: 207 RIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPY 266 RIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPY Sbjct: 181 RIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPY 240 Query: 267 IGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFI 326 IGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFI Sbjct: 241 IGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFI 300 Query: 327 VKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPF 386 VKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPF Sbjct: 301 VKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPF 360 Query: 387 PVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT 434 PVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT Sbjct: 361 PVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT 408 >6IBP-A nrPDB Length = 420 Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 128/234 (54%), Gaps = 17/234 (7%) Query: 58 ELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHE 117 E I GGAVRDLL G P D+D A++A P Q+K +F R ++ G HGT+ L Sbjct: 60 EAYIVGGAVRDLLLGKTPHDVDVASSALPQQVKVLFD----RTVDT-GIDHGTVLVLLDG 114 Query: 118 ENFEITTLRIDVT-TDGRHAE-VEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYED 175 E E+TT R + + +D R + VEF ++D RRD TIN+M + D + D F G ED Sbjct: 115 EGIEVTTFRTESSYSDNRRPDSVEFVLSLEEDLRRRDFTINAMAMTEDLKIIDPFGGKED 174 Query: 176 LKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDH--DPETLEAIAENAKGLAGI 233 LKNK +R VG +R +ED LR+LR RF G++ D D +TL +I +A+ + I Sbjct: 175 LKNKVIRAVGDPDERFEEDALRMLRAIRFSGQL-----DFIIDMKTLLSIRRHARLIRFI 229 Query: 234 SGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDG 287 + ER+ E+ KI V + + + D + + LP L E D ++ + DG Sbjct: 230 AVERLKSEIDKIFVNPSMQKSMAYLKDSVLTRF--LPVGG-LFEVDWITYHTDG 280 >1MIW-A nrPDB Length = 404 Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 41 FTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRM 100 F E L + +L + ++ GGAVRDLL G D+D AT+A P + +F Sbjct: 5 FQEALGIIQQL-KQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPK----- 58 Query: 101 INNRGEKHGTITARLHEENFEITTLRIDVTTDG--RHAEVEFTTDWQKDAERRDLTINSM 158 + G KHGT+ + +E+TT + D + R V F ++D +RRD T+N++ Sbjct: 59 TIDVGSKHGTVVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAI 118 Query: 159 FLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPE 218 + GT+ D F G E ++ + +R VG A++R +ED LR++R RF + P+ Sbjct: 119 AMDEYGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFA---LAPD 175 Query: 219 TLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYI 267 T +AI +NA LA IS ER+ +E++K+L G + L+ + + Y+ Sbjct: 176 TEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAYL 224 >3AQL-A nrPDB Length = 415 Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 104/210 (49%), Gaps = 21/210 (10%) Query: 54 KENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITA 113 K +E + GG VRDLL G KP+D D T ATP Q++++F++ R++ G + Sbjct: 30 KAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNC--RLV---GRRFRLAHV 84 Query: 114 RLHEENFEITTLR-------IDVTTDGRHAEVEFTTD-----WQKDAERRDLTINSMFLG 161 E E+ T R D TT R D ++DA+RRD TINS++ Sbjct: 85 MFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYS 144 Query: 162 F-DGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETL 220 D T+ DY G +DLK+ +R +G+ + R +ED +R+LR RF ++ + PET Sbjct: 145 VADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRIS---PETA 201 Query: 221 EAIAENAKGLAGISGERIWVELKKILVGNH 250 E I A L I ++ E K+L + Sbjct: 202 EPIPRLATLLNDIPPAHLFEESLKLLQAGY 231 >4WBY-A nrPDB Length = 410 Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 11/154 (7%) Query: 61 IAGGAVRDLLNGVKPQDIDFATTATPTQM-KEMFQSAGIRMINNRGEKHGTITARLHEEN 119 I GG VRD+L G + D+DF ++ KE+ + G+ + + + GT ++ + Sbjct: 29 IVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNV--HPFPEFGTAHLKIGKLK 86 Query: 120 FEITTLRIDV-TTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFD----GTLFDYFNGYE 174 E T R + G + +VE ++D RRD TIN+M + + GTL DYF G Sbjct: 87 LEFATARRETYPRPGAYPKVE-PASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGLR 145 Query: 175 DLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRI 208 DLK+K +R V H I ED +RILR RF GR+ Sbjct: 146 DLKDKVIR-VLHPVSFI-EDPVRILRALRFAGRL 177 >3H3A-A nrPDB Length = 441 Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 93/204 (45%), Gaps = 25/204 (12%) Query: 56 NHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGT-ITAR 114 N + + GG VRDLL G+K DID + F R + + KH +TA Sbjct: 34 NMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALE----FAEYAKRFLPGKLVKHDKFMTAS 89 Query: 115 LHEENFEITTLRIDVTTD--------GRHAEVEFTTDWQKDAERRDLTINSMFLGFD--- 163 L F LRID+ T + +VE +T +KD RRD TIN+M + + Sbjct: 90 L----FLKGGLRIDIATARLEYYESPAKLPDVEMST-IKKDLYRRDFTINAMAIKLNPKD 144 Query: 164 -GTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEA 222 G L D+F GY DLK +R V H + +D RILR RF R D + E L Sbjct: 145 FGLLIDFFGGYRDLKEGVIR-VLHTLSFV-DDPTRILRAIRFEQRF-DFRIEETTERLLK 201 Query: 223 IAENAKGLAGISGERIWVELKKIL 246 A L +G R+ EL+KIL Sbjct: 202 QAVEEGYLERTTGPRLRQELEKIL 225 >3WFS-C nrPDB Length = 512 Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 40/244 (16%) Query: 57 HELRIAGGAVRDLLNGVKPQ----DIDFATTATPTQMKEMFQ---SAGIRMINNRG--EK 107 H I GG VRD + G +P D+DF TTA P ++ + F + RG K Sbjct: 35 HYCFIVGGWVRDRILG-EPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIK 93 Query: 108 HGTITARL-----HEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGF 162 TI + + + F+ + L+ G+ E D ++ RD T N++ + Sbjct: 94 RPTIASVVLHLPPYRYRFDFSPLK------GKDLEKALIEDLKE----RDFTANAIAVNL 143 Query: 163 DGTL---------FDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPG 213 D L +D G +DL+ +R V + + ++ D +R+LR FR ++K Sbjct: 144 DDVLSIGAKQTIVYDPTGGIKDLEQGLLRPV--SIENLKRDPVRVLRGFRI---AIEKNL 198 Query: 214 DHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA 273 + E + E+ + + + ERI EL KI+ + +I +Y+ V I +P Sbjct: 199 QLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAI-IPEIG 257 Query: 274 SLEE 277 L E Sbjct: 258 RLRE 261 >3WFO-A nrPDB Length = 525 Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 40/244 (16%) Query: 57 HELRIAGGAVRDLLNGVKPQ----DIDFATTATPTQMKEMFQ---SAGIRMINNRG--EK 107 H I GG VRD + G +P D+DF TTA P ++ + F + RG K Sbjct: 35 HYCFIVGGWVRDRILG-EPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIK 93 Query: 108 HGTITARL-----HEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGF 162 TI + + + F+ + L+ G+ E D ++ RD T N++ + Sbjct: 94 RPTIASVVLHLPPYRYRFDFSPLK------GKDLEKALIEDLKE----RDFTANAIAVNL 143 Query: 163 DGTL---------FDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPG 213 D L +D G +DL+ +R V + + ++ D +R+LR FR ++K Sbjct: 144 DDVLSIGAKQTIVYDPTGGIKDLEQGLLRPV--SIENLKRDPVRVLRGFRI---AIEKNL 198 Query: 214 DHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA 273 + E + E+ + + + ERI EL KI+ + +I +Y+ V I +P Sbjct: 199 QLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAI-IPEIG 257 Query: 274 SLEE 277 L E Sbjct: 258 RLRE 261 >2O06-A nrPDB Length = 304 Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 11/96 (11%) Query: 323 GLFIVKNRKDL--IKATDSSDPLKPYQDFIIDSREPDATTRVCE--LLKYQGEHC----- 373 G +K +D + TDSSDP+ P + +S T + E +L QGE C Sbjct: 158 GFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE-CQWLHL 216 Query: 374 -LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 L+KEM+Q+ FPV + + +IG +L Sbjct: 217 DLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFML 252 >3VR3-D nrPDB Length = 465 Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 163 DGTLFDYFNGYE--DLKNKKVRFVGHAKQ-RIQEDYLRILRYFRFYGRIVDKPGDHDPET 219 D + F G +LKN VRF+GH Q + ED I R F GR P D+ PE Sbjct: 57 DKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDM--IGRVFDGLGR----PKDNGPEI 110 Query: 220 L 220 L Sbjct: 111 L 111 >1LW3-A nrPDB Length = 657 Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 191 IQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNH 250 I ++ L+ + FR GRI H PE+ I ++ + G+SG+R + K + Sbjct: 253 IPDEELKRVASFRSRGRIPVLSWIH-PESQATITRCSQPMVGVSGKRSKEDEKYLQAIMD 311 Query: 251 VNHLIHLIYDLDVAPYIGLPANAS 274 N H I+ D P + AN + Sbjct: 312 SNAQSHKIFIFDARPSVNAVANKA 335 >3OVQ-A nrPDB Length = 228 Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust. Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 372 HCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYI 431 H ++ + +QW + P V+G + + + + GAL++ +RE K G ++ + Y+ Sbjct: 70 HMMVSKPEQW-VKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYL 128 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4X4W-A nrPDB 695 0.0 6IBP-A nrPDB 262 2e-70 1MIW-A nrPDB 256 1e-68 3AQL-A nrPDB 223 2e-58 3WFS-C nrPDB 203 9e-53 3H3A-A nrPDB 186 1e-47 4WBY-A nrPDB 179 3e-45 Sequences not found previously or not previously below threshold: 3WFO-A nrPDB 203 1e-52 2O06-A nrPDB 32 0.50 6IC4-I nrPDB 31 1.1 4PIC-A nrPDB 30 1.9 3OVQ-A nrPDB 30 3.0 1JHE-A nrPDB 29 5.0 4PZ2-A nrPDB 28 6.1 4ZEF-A nrPDB 28 8.0 5IY7-W nrPDB 28 9.6 >4X4W-A nrPDB Length = 416 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 407/408 (99%), Positives = 408/408 (100%) Query: 27 LFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATP 86 +FTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATP Sbjct: 1 MFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATP 60 Query: 87 TQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQK 146 TQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQK Sbjct: 61 TQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQK 120 Query: 147 DAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYG 206 DAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYG Sbjct: 121 DAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYG 180 Query: 207 RIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPY 266 RIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPY Sbjct: 181 RIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPY 240 Query: 267 IGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFI 326 IGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFI Sbjct: 241 IGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFI 300 Query: 327 VKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPF 386 VKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPF Sbjct: 301 VKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPF 360 Query: 387 PVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT 434 PVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT Sbjct: 361 PVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT 408 >6IBP-A nrPDB Length = 420 Score = 262 bits (670), Expect = 2e-70, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 126/246 (51%), Gaps = 14/246 (5%) Query: 44 GLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINN 103 +K + L E I GGAVRDLL G P D+D A++A P Q+K +F + Sbjct: 47 AIKVIHTL-KAAGFEAYIVGGAVRDLLLGKTPHDVDVASSALPQQVKVLFDR-----TVD 100 Query: 104 RGEKHGTITARLHEENFEITTLRIDVTTDG--RHAEVEFTTDWQKDAERRDLTINSMFLG 161 G HGT+ L E E+TT R + + R VEF ++D RRD TIN+M + Sbjct: 101 TGIDHGTVLVLLDGEGIEVTTFRTESSYSDNRRPDSVEFVLSLEEDLRRRDFTINAMAMT 160 Query: 162 FDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLE 221 D + D F G EDLKNK +R VG +R +ED LR+LR RF G++ D +TL Sbjct: 161 EDLKIIDPFGGKEDLKNKVIRAVGDPDERFEEDALRMLRAIRFSGQLDFII---DMKTLL 217 Query: 222 AIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKV 281 +I +A+ + I+ ER+ E+ KI V + + + D + + LP L E D + Sbjct: 218 SIRRHARLIRFIAVERLKSEIDKIFVNPSMQKSMAYLKDSVLTRF--LPVGG-LFEVDWI 274 Query: 282 SKNVDG 287 + + DG Sbjct: 275 TYHTDG 280 >1MIW-A nrPDB Length = 404 Score = 256 bits (654), Expect = 1e-68, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 41 FTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRM 100 F E L + +L + ++ GGAVRDLL G D+D AT+A P + +F Sbjct: 5 FQEALGIIQQL-KQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPK----- 58 Query: 101 INNRGEKHGTITARLHEENFEITTLRIDVTTDG--RHAEVEFTTDWQKDAERRDLTINSM 158 + G KHGT+ + +E+TT + D + R V F ++D +RRD T+N++ Sbjct: 59 TIDVGSKHGTVVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAI 118 Query: 159 FLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPE 218 + GT+ D F G E ++ + +R VG A++R +ED LR++R RF + P+ Sbjct: 119 AMDEYGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFA---LAPD 175 Query: 219 TLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYI 267 T +AI +NA LA IS ER+ +E++K+L G + L+ + + Y+ Sbjct: 176 TEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAYL 224 >3AQL-A nrPDB Length = 415 Score = 223 bits (567), Expect = 2e-58, Method: Composition-based stats. Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 38/291 (13%) Query: 38 QSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAG 97 + + LK + L K +E + GG VRDLL G KP+D D T ATP Q++++F++ Sbjct: 15 KDISENALKVMYRLN-KAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCR 73 Query: 98 IRMINNRGEKHGTITARLHEENFEITTLR-------IDVTTDGRHAEVEFTTD-----WQ 145 + G + E E+ T R D TT R D + Sbjct: 74 L-----VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIE 128 Query: 146 KDAERRDLTINSMFLGF-DGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRF 204 +DA+RRD TINS++ D T+ DY G +DLK+ +R +G+ + R +ED +R+LR RF Sbjct: 129 EDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRF 188 Query: 205 YGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVA 264 ++ + PET E I A L I ++ E K+L + L+ + + Sbjct: 189 AAKLGMRIS---PETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLF 245 Query: 265 PYIGLPANASLEE----------FDKVSKNVD-----GFSPKPVTLLASLF 300 + P ++V KN D P L A++F Sbjct: 246 QPL-FPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMF 295 >3WFS-C nrPDB Length = 512 Score = 203 bits (517), Expect = 9e-53, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 39/275 (14%) Query: 57 HELRIAGGAVRDLLNGVKPQ---DIDFATTATPTQMKEMFQ---SAGIRMINNRG--EKH 108 H I GG VRD + G D+DF TTA P ++ + F + RG K Sbjct: 35 HYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKR 94 Query: 109 GTITARL-----HEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFD 163 TI + + + F+ + L+ G+ E D ++ RD T N++ + D Sbjct: 95 PTIASVVLHLPPYRYRFDFSPLK------GKDLEKALIEDLKE----RDFTANAIAVNLD 144 Query: 164 GTL---------FDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 L +D G +DL+ +R V + + ++ D +R+LR FR ++K Sbjct: 145 DVLSIGAKQTIVYDPTGGIKDLEQGLLRPV--SIENLKRDPVRVLRGFRIA---IEKNLQ 199 Query: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANAS 274 + E + E+ + + + ERI EL KI+ + +I +Y+ V I +P Sbjct: 200 LTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAI-IPEIGR 258 Query: 275 LEEF-DKVSKNVDGFSPKPVTLLASLFKVQDDVTK 308 L E D+ ++ + L L +V +D K Sbjct: 259 LREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAK 293 >3WFO-A nrPDB Length = 525 Score = 203 bits (517), Expect = 1e-52, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 39/275 (14%) Query: 57 HELRIAGGAVRDLLNGVKPQ---DIDFATTATPTQMKEMFQ---SAGIRMINNRG--EKH 108 H I GG VRD + G D+DF TTA P ++ + F + RG K Sbjct: 35 HYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKR 94 Query: 109 GTITARL-----HEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFD 163 TI + + + F+ + L+ G+ E D ++ RD T N++ + D Sbjct: 95 PTIASVVLHLPPYRYRFDFSPLK------GKDLEKALIEDLKE----RDFTANAIAVNLD 144 Query: 164 GTL---------FDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 L +D G +DL+ +R V + + ++ D +R+LR FR ++K Sbjct: 145 DVLSIGAKQTIVYDPTGGIKDLEQGLLRPV--SIENLKRDPVRVLRGFRIA---IEKNLQ 199 Query: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANAS 274 + E + E+ + + + ERI EL KI+ + +I +Y+ V I +P Sbjct: 200 LTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAI-IPEIGR 258 Query: 275 LEEF-DKVSKNVDGFSPKPVTLLASLFKVQDDVTK 308 L E D+ ++ + L L +V +D K Sbjct: 259 LREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAK 293 >3H3A-A nrPDB Length = 441 Score = 186 bits (473), Expect = 1e-47, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 109/242 (45%), Gaps = 21/242 (8%) Query: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQ 94 P+ +LF + L + + N + + GG VRDLL G+K DID + F Sbjct: 17 PKILNLF----RLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALE----FA 68 Query: 95 SAGIRMINNRGEKHGT-ITARL---HEENFEITTLRID-VTTDGRHAEVEFTTDWQKDAE 149 R + + KH +TA L +I T R++ + + +VE +T +KD Sbjct: 69 EYAKRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMST-IKKDLY 127 Query: 150 RRDLTINSMFLGFD----GTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFY 205 RRD TIN+M + + G L D+F GY DLK +R V H + +D RILR RF Sbjct: 128 RRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIR-VLHTLSFV-DDPTRILRAIRFE 185 Query: 206 GRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAP 265 R D + E L A L +G R+ EL+KIL + I + DV Sbjct: 186 QRF-DFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIK 244 Query: 266 YI 267 ++ Sbjct: 245 HL 246 >4WBY-A nrPDB Length = 410 Score = 179 bits (453), Expect = 3e-45, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 15/243 (6%) Query: 31 KLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQM- 89 K++ PE E + + ++ + I GG VRD+L G + D+DF ++ Sbjct: 2 KIKVPEN---IEEIAREVGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELA 58 Query: 90 KEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDV-TTDGRHAEVEFTTDWQKDA 148 KE+ + G+ + + + GT ++ + E T R + G + +VE ++D Sbjct: 59 KELARRHGVNV--HPFPEFGTAHLKIGKLKLEFATARRETYPRPGAYPKVE-PASLKEDL 115 Query: 149 ERRDLTINSMFLGFD----GTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRF 204 RRD TIN+M + + GTL DYF G DLK+K +R V H I ED +RILR RF Sbjct: 116 IRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIR-VLHPVSFI-EDPVRILRALRF 173 Query: 205 YGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVA 264 GR+ K E L A N L R+ E+K L + ++ L V Sbjct: 174 AGRLNFK-LSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVL 232 Query: 265 PYI 267 I Sbjct: 233 EEI 235 >2O06-A nrPDB Length = 304 Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 11/96 (11%) Query: 323 GLFIVKNRKDLIKA--TDSSDPLKPYQDFIIDSREPDATTRVCE--LLKYQGEHC----- 373 G +K +D TDSSDP+ P + +S T + E +L QGE C Sbjct: 158 GFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE-CQWLHL 216 Query: 374 -LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 L+KEM+Q+ FPV + + +IG +L Sbjct: 217 DLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFML 252 >6IC4-I nrPDB Length = 233 Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 17/113 (15%) Query: 134 RHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFD-YFNGYEDLKNKKVRFVGHAKQRIQ 192 R E T+ RR ++ L D ++D F G + + + Sbjct: 122 RGTEQLMPTELSGGMNRRVALARAIALDPDLIMYDEPFAGQDPIVKGVL----------- 170 Query: 193 EDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLA--GISGERIWVELK 243 R++R R + HD +IA+ +A I GE EL+ Sbjct: 171 ---TRLIRSLREALDLTTIIVSHDVPETLSIADYIYVVAEGKIQGEGTPEELQ 220 >4PIC-A nrPDB Length = 156 Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 96 AGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTI 155 ++ +G + +++L +E+ + T + +T+ + VE +A+ + T+ Sbjct: 49 HAKMVLKEKGIEAAHRSSQLKKEHIDWATHVLAMTSGHKDMIVERF----PEAKDKTFTL 104 Query: 156 NSMFLGFDGTLFDYFNG----YEDLKNKKVRFVGHAKQRIQEDYL 196 G DG + D F G Y +++ + +++Q + L Sbjct: 105 KQFVSGTDGDIADPFGGPIEVYRAARDELETLIDRLAEKLQTEQL 149 >3OVQ-A nrPDB Length = 228 Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 372 HCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYI 431 H ++ + +QW + P V+G + + + + GAL++ +RE K G ++ + Y+ Sbjct: 70 HMMVSKPEQW-VKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYL 128 >1JHE-A nrPDB Length = 135 Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 2/123 (1%) Query: 42 TEGLKSLTELFVKENHEL--RIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIR 99 EGL + + E I G D D + + + + Sbjct: 6 EEGLPLVGRVAAGEPLPAQWHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLA 65 Query: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159 + + ++G + ++ + L+ E D ++ TI + Sbjct: 66 VHKTQDVRNGQVVVARIDDAVTVARLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLA 125 Query: 160 LGF 162 +G Sbjct: 126 VGV 128 >4PZ2-A nrPDB Length = 534 Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 16/148 (10%) Query: 126 RIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYE-DLKN----KK 180 R + + + D + + +G+ D +G D ++ Sbjct: 27 RTTAAGEEKEERGQLLFDVPEIRFTKLF--------INGSFVDAVSGRTFDTRDPRTGGV 78 Query: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 + V A +ED +R R + P E +A A + +GE + Sbjct: 79 IASVAEAD---KEDVDLAVRAARAAFDHGEWPRMSGSERGRIMARLADLVEEHAGELAAL 135 Query: 241 ELKKILVGNHVNHLIHLIYDLDVAPYIG 268 E V + + Y Sbjct: 136 ESLDAGKHPAVTRAVDVGNAAGSLRYFA 163 >4ZEF-A nrPDB Length = 251 Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Query: 26 YLFTMKL-QSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRD 68 Y F +K Q+PE +F EGLK + + +I G V+D Sbjct: 211 YGFAVKKGQNPELLEMFNEGLKEM----KRTGEYDKIIGTYVKD 250 >5IY7-W nrPDB Length = 760 Score = 27.7 bits (60), Expect = 9.6, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 155 INSMFLGFDGTLFDYF-NGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFR 203 I+SM + D E L+ +R +QR++++Y R++ R Sbjct: 244 IDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLR 293 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.134 0.369 Lambda K H 0.267 0.0413 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,586,118 Number of Sequences: 36641 Number of extensions: 742190 Number of successful extensions: 1977 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 1912 Number of HSP's gapped (non-prelim): 42 length of query: 434 length of database: 10,336,785 effective HSP length: 100 effective length of query: 334 effective length of database: 6,672,685 effective search space: 2228676790 effective search space used: 2228676790 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 61 (28.1 bits)