BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q96PS8
(301 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
6F7H-A nrPDB 606 e-174
1LDI-A nrPDB 157 8e-39
3C02-A nrPDB 142 2e-34
2EVU-A nrPDB 95 4e-20
3NE2-A nrPDB 78 5e-15
3LLQ-A nrPDB 70 1e-12
1J4N-A nrPDB 68 6e-12
1IH5-A nrPDB 61 7e-10
3CLL-A nrPDB 60 8e-10
2ZZ9-A nrPDB 60 2e-09
3IYZ-A nrPDB 59 2e-09
2O9F-A nrPDB 57 1e-08
3GD8-A nrPDB 56 2e-08
5I32-A nrPDB 52 5e-07
1YMG-A nrPDB 51 5e-07
4OJ2-X nrPDB 51 5e-07
3M9I-A nrPDB 51 8e-07
4NEF-A nrPDB 49 2e-06
3D9S-A nrPDB 44 1e-04
2W1P-A nrPDB 40 0.001
6EM8-A nrPDB 34 0.062
6EMW-E nrPDB 33 0.21
2JZ4-A nrPDB 31 0.63
1TXG-A nrPDB 30 1.8
6IP5-3O nrPDB 29 2.6
>6F7H-A nrPDB
Length = 301
Score = 606 bits (1562), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MVFTQAPAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFL 60
MVFTQAPAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFL
Sbjct: 1 MVFTQAPAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFL 60
Query: 61 AGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYV 120
AGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYV
Sbjct: 61 AGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYV 120
Query: 121 LYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDR 180
LYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDR
Sbjct: 121 LYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDR 180
Query: 181 RNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG 240
RNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG
Sbjct: 181 RNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG 240
Query: 241 WWWVPVVAPLVGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
WWWVPVVAPLVGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK
Sbjct: 241 WWWVPVVAPLVGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
Query: 301 L 301
L
Sbjct: 301 L 301
>1LDI-A nrPDB
Length = 281
Score = 157 bits (396), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 158/284 (55%), Gaps = 16/284 (5%)
Query: 18 SLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVS 77
S L QC+AEFLG +L+ G VA +G + G + + G L V +AIY+ VS
Sbjct: 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWG-LGVAMAIYLTAGVS 63
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
GAHLNPA ++A+ + K+ +I+ Q+ AFCA+ Y LY++ ++ + V
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVR 123
Query: 138 GPKET---ASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAG-LEPVV 193
G E+ A F+TYP P+++ F +++ T +L+ +LA+ D N GVP G L P++
Sbjct: 124 GSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGN-GVPRGPLAPLL 182
Query: 194 VGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG--WWWVPVVAPLV 251
+G+LI +G SMG G +NPARD GP++F ++AGWG F+ G ++ VP+ P+V
Sbjct: 183 IGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIV 242
Query: 252 GATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQ 295
GA VG Y+ L+ H P D+ + K E TP+ +
Sbjct: 243 GAIVGAFAYRKLIGRHLP------CDICVVEEK--ETTTPSEQK 278
>3C02-A nrPDB
Length = 258
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 144/277 (51%), Gaps = 21/277 (7%)
Query: 13 HLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYV 72
H+ R+ + EFLG FVLM L +GA A T+G + G+++ + L LAV I V
Sbjct: 2 HMLFYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLS-GDWYKLCLGWGLAVFFGILV 60
Query: 73 GGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGG 132
+SGAHLN A S+ + + + K+P+Y QLL AF + Y LYH + N
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISN---- 116
Query: 133 NLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLE-P 191
K + T P +SL F ++++ TG+L++ +L ++D G L+
Sbjct: 117 ------SKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLS 170
Query: 192 VVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLV 251
VVG++IL +G++ G N G LNP+RDLG R + +A +G + F+ N ++WVP+VAP V
Sbjct: 171 SVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIA-YGKDTFTKDNFYFWVPLVAPCV 229
Query: 252 GATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASEL 288
G+ V Y ++ P DL + + +L
Sbjct: 230 GSVVFCQFYDKVIC--------PLVDLANNEKDGVDL 258
>2EVU-A nrPDB
Length = 246
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 127/265 (47%), Gaps = 42/265 (15%)
Query: 20 LARQCLAEFLGVFVLMLLTQG--AVAQAVTSGETKGNFFTMF--------------LAGS 63
L ++C+AEF+G F+L+ G AV + SG T N F + LA
Sbjct: 4 LTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFG 63
Query: 64 LAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYH 123
A+ +IY GN+SG H+NPA ++ + V + P ++ YI+ QLL A A G+ L
Sbjct: 64 FAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGA--AFGSFIFLQC 121
Query: 124 DALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAI-LDRRN 182
+ T G L AT P P +S L +V+GT +L++ ++ I +D R
Sbjct: 122 AGIGAATVGGLG-----------ATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDER- 169
Query: 183 KGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGW- 241
P G +++G+ + + ++G G LNPAR GP L +F+ + W
Sbjct: 170 --APKGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYL-------NDMIFAGTDLWN 220
Query: 242 -WWVPVVAPLVGATVGTATYQLLVA 265
+ + V+ P+VGA + TYQ L +
Sbjct: 221 YYSIYVIGPIVGAVLAALTYQYLTS 245
>3NE2-A nrPDB
Length = 246
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 121/265 (45%), Gaps = 47/265 (17%)
Query: 20 LARQCLAEFLGVFVLMLLTQGA--VAQAVTSGETKGN--------------FFTMFLAGS 63
LA++ AE +G F+L+ GA + + +G K N +F + +A +
Sbjct: 5 LAKRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFA 64
Query: 64 LAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYH 123
LA+ IY G +SGAH+NPA ++A+ +GR P ++ YI+ Q + A S +L+
Sbjct: 65 LAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGS----LLF- 119
Query: 124 DALQNYTGGNLTVTGP--KETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAI-LDR 180
L GP + AT P P + L + +GT +L++ ++ + +D
Sbjct: 120 ----------LACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDE 169
Query: 181 RNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG 240
R P G +V+G+ + + ++G G LNPAR GP L + G N
Sbjct: 170 R---APPGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGI--------NL 218
Query: 241 WWWVP--VVAPLVGATVGTATYQLL 263
W + P V+ P+VGA Y L
Sbjct: 219 WQYFPIYVIGPIVGAVAAAWLYNYL 243
>3LLQ-A nrPDB
Length = 256
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 107/245 (43%), Gaps = 20/245 (8%)
Query: 19 LLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVSG 78
++ R+ LAEF G F L+ G+ A E F + LA L V Y G +SG
Sbjct: 28 VMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISG 87
Query: 79 AHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTG 138
H NPA S+ + + GR P L Y++ Q+ A A+ A YV+ GG G
Sbjct: 88 GHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGG-FASNG 146
Query: 139 PKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLI 198
E + P Y SL + L +++ T L+ IL + VPAG P+ +G+ +
Sbjct: 147 YGEHS------PGGY-SLVSALLIEIILTAFF---LIVILGSTHGRVPAGFAPIAIGLAL 196
Query: 199 LALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTA 258
+ L +NPAR G LF V GW + W+ +AP+VG G
Sbjct: 197 TLIHLISIPVTNTSVNPARSTGQALF--VGGWALQQL-------WLFWLAPIVGGAAGAV 247
Query: 259 TYQLL 263
++L
Sbjct: 248 IWKLF 252
>1J4N-A nrPDB
Length = 271
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 41/294 (13%)
Query: 17 RSLLARQCLAEFLGVFVLMLLTQGA-------VAQAVTSGETKGNFFTMFLAGSLAVTIA 69
+ L R +AEFL + + + ++ G+ + T+G + N G T+A
Sbjct: 7 KKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLA 66
Query: 70 IYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNY 129
VG ++SGAHLNPA +L + + ++ ++ +YI+ Q + A AT +L
Sbjct: 67 QSVG-HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIV---ATAIL-------- 114
Query: 130 TGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGL 189
+T + P + + A AP ++ G +++GT L++ +LA DRR + + G
Sbjct: 115 --SGITSSLPDNSLGLNAL--APGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDL-GGS 169
Query: 190 EPVVVGMLILALGLSMGAN---CGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPV 246
P+ +G + ALG + + CGI NPAR G + T+ W+
Sbjct: 170 GPLAIGFSV-ALGHLLAIDYTGCGI--NPARSFGSSVITH-----------NFQDHWIFW 215
Query: 247 VAPLVGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
V P +GA + Y ++A + + + S Q + +L+ +E K
Sbjct: 216 VGPFIGAALAVLIYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDINSRVEMK 269
>1IH5-A nrPDB
Length = 269
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 39/292 (13%)
Query: 17 RSLLARQCLAEFLGVFVLMLLTQGAV---AQAVTSGETK-GNFFTMFLAGSLAVTIAIYV 72
+ L R +AEFL + + ++ G+ V + +T + + LA L++
Sbjct: 7 KKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQS 66
Query: 73 GGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGG 132
G++SGAHLNPA +L + + ++ + +YI+ Q + A A+ + N G
Sbjct: 67 VGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGR 126
Query: 133 NLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPV 192
N G G +++GT L++ +LA DRR + + G P+
Sbjct: 127 NDLADGVNS---------------GQGLGIEIIGTLQLVLCVLATTDRRRRDL-GGSAPL 170
Query: 193 VVGMLILALGLSMGAN---CGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGW-WWVPVVA 248
+G+ + ALG + + CGI NPAR G + T+ + N W +W V
Sbjct: 171 AIGLSV-ALGHLLAIDYTGCGI--NPARSFGSAVITH---------NFSNHWIFW---VG 215
Query: 249 PLVGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
P +G + Y ++A + + + S Q + +L+ +E K
Sbjct: 216 PFIGGALAVLIYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDINSRVEMK 267
>3CLL-A nrPDB
Length = 300
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 111/269 (41%), Gaps = 38/269 (14%)
Query: 6 APAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLA 65
AP +G L++ S R +AEF+ + + +T V G+ + +A +
Sbjct: 43 APFFDLGELKLWSFW-RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFG 101
Query: 66 --VTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYH 123
+ + +Y +SG H+NPA + + + ++ ++ +Y++ Q L A C G
Sbjct: 102 GMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMK 161
Query: 124 DALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNG--FLDQVLGTGMLIVGLLAILD-- 179
+ GG +V L N G +++GT +L+ + + D
Sbjct: 162 GPYNQFGGGANSVA----------------LGYNKGTALGAEIIGTFVLVYTVFSATDPK 205
Query: 180 --RRNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSA 237
R+ VP L P+ +G + + L+ G +NPAR G + +F++
Sbjct: 206 RSARDSHVPI-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV----------IFNS 254
Query: 238 GNGW--WWVPVVAPLVGATVGTATYQLLV 264
W W+ V P +GA V A +Q ++
Sbjct: 255 NKVWDDQWIFWVGPFIGAAVAAAYHQYVL 283
>2ZZ9-A nrPDB
Length = 301
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 22 RQCLAEFLGVFVLMLLTQGAVAQAVTSGETKG----NFFTMFLAGSLAVTIAIYVGGNVS 77
+ AEFL + + +LL+ G+ + G ++ + + L L++ + G++S
Sbjct: 14 KAVTAEFLAMLIFVLLSVGS---TINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS 70
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
G H+NPA ++AM ++ K YI Q L A +G Y+ VT
Sbjct: 71 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYL---------------VT 115
Query: 138 GPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGML 197
P + T L+ +G L +++ T L+ + A D + V G +
Sbjct: 116 PPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD--------VTGSV 167
Query: 198 ILALGLSMGAN-------CGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPL 250
LA+G S+ G +NPAR GP + + W W+ V P+
Sbjct: 168 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVI--MGNWENH---------WIYWVGPI 216
Query: 251 VGATVGTATYQLLVA--LHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
+GA + A Y+ + + + A + Q K S +E + +E +
Sbjct: 217 IGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETE 268
>3IYZ-A nrPDB
Length = 340
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 22 RQCLAEFLGVFVLMLLTQGAVAQAVTSGETKG----NFFTMFLAGSLAVTIAIYVGGNVS 77
+ AEFL + + +LL+ G+ + G ++ + + L L++ + G++S
Sbjct: 53 KAVTAEFLAMLIFVLLSVGS---TINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS 109
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
G H+NPA ++AM ++ K YI Q L A +G Y+ VT
Sbjct: 110 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYL---------------VT 154
Query: 138 GPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGML 197
P + T L+ +G L +++ T L+ + A D + V G +
Sbjct: 155 PPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD--------VTGSV 206
Query: 198 ILALGLSMGAN-------CGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPL 250
LA+G S+ G +NPAR GP + + W W+ V P+
Sbjct: 207 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVI--MGNWENH---------WIYWVGPI 255
Query: 251 VGATVGTATYQLLVA--LHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
+GA + A Y+ + + + A + Q K S +E + +E +
Sbjct: 256 IGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETE 307
>2O9F-A nrPDB
Length = 234
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 91/222 (40%), Gaps = 23/222 (10%)
Query: 18 SLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVS 77
S + R+ AE G F L+ G+ A E F + LA L V + G++S
Sbjct: 2 SHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHIS 61
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
G H NPA ++ + GR P ++ Y++ Q++ A+ Y++ T
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGK-----------T 110
Query: 138 GPKETASIFAT------YPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEP 191
G AS FA+ P Y L+ ++ VL G L+V I +K PAG P
Sbjct: 111 GFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLV----IHGATDKFAPAGFAP 166
Query: 192 VVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPE 233
+ +G+ + L +NPAR +F GW E
Sbjct: 167 IAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQ--GGWALE 206
>3GD8-A nrPDB
Length = 223
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 22 RQCLAEFLGVFVLMLLTQGAVAQAVTSGETKG----NFFTMFLAGSLAVTIAIYVGGNVS 77
+ AEFL + + +LL+ G+ + G T+ + + L L++ + G++S
Sbjct: 5 KAVTAEFLAMLIFVLLSLGS---TINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHIS 61
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
G H+NPA ++AM ++ K YI Q L A +G Y+ VT
Sbjct: 62 GGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYL---------------VT 106
Query: 138 GPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGML 197
P + T L+ +G L +++ T L+ + A D + V G +
Sbjct: 107 PPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTD--------VTGSI 158
Query: 198 ILALGLSMGAN-------CGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPL 250
LA+G S+ G +NPAR GP + + W W+ V P+
Sbjct: 159 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVI--MGNWENH---------WIYWVGPI 207
Query: 251 VGATVGTATYQ 261
+GA + Y+
Sbjct: 208 IGAVLAGGLYE 218
>5I32-A nrPDB
Length = 275
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 35/236 (14%)
Query: 22 RQCLAEFLGVFVLMLLTQG-AVAQAVTSGETKGN---FFTMFLAGSLAVTIAIYVGGNVS 77
R LAEF+ + + G A+A A + + + + + A+ +A+ +G N+S
Sbjct: 44 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANIS 103
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
G H+NPA + + + G++ + Y + QLL G+T + L Y G L V
Sbjct: 104 GGHVNPAVTFGLAVGGQITVITGVFYWIAQLL------GSTAACF---LLKYVTGGLAV- 153
Query: 138 GPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGML 197
P + A L G + +++ T L+ + A KG + P+ +G++
Sbjct: 154 -PTHSV-------AAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLI 205
Query: 198 ILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGN-GWWWVPVVAPLVG 252
+ A L+ G G +NPAR GP + +AG+ WV V PL+G
Sbjct: 206 VGANILAAGPFSGGSMNPARSFGPAV------------AAGDFSGHWVYWVGPLIG 249
>1YMG-A nrPDB
Length = 263
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 41/212 (19%)
Query: 60 LAGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATY 119
LA LA+ + G++SGAH+NPA + A + ++ ++ Y++ QLL A + Y
Sbjct: 46 LAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLY 105
Query: 120 VLYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILD 179
+VT P ++ P +S+ + ++ T ++ + A D
Sbjct: 106 ---------------SVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYD 150
Query: 180 RRNKGVPAGLEPVVVGMLILALGLSMGAN-------CGIPLNPARDLGPRLFTYVAGWGP 232
R G +G + LA+G S+ G +NPAR P + T
Sbjct: 151 ERRNG--------RLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILT------- 195
Query: 233 EVFSAGNGWWWVPVVAPLVGATVGTATYQLLV 264
F+ WV V P++GA +G+ Y L+
Sbjct: 196 RNFTNH----WVYWVGPVIGAGLGSLLYDFLL 223
>4OJ2-X nrPDB
Length = 274
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 125/298 (41%), Gaps = 55/298 (18%)
Query: 15 RIRSL-LARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVG 73
+RS+ +R AEFL + + G+ A+ + + + +A L + +
Sbjct: 6 ELRSIAFSRAVFAEFLATLLFVFFGLGS---ALNWPQALPSVLQIAMAFGLGIGTLVQAL 62
Query: 74 GNVSGAHLNPAFSLAMCIVG-RLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGG 132
G++SGAH+NPA ++A C+VG + ++ Y+ QLL A + L H+ G
Sbjct: 63 GHISGAHINPAVTVA-CLVGCHVSVLRAAFYVAAQLLGAVAGAA----LLHEITPADIRG 117
Query: 133 NLTVTG-PKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRR---NKGVPAG 188
+L V T + A +L+L L++ + A D R N G PA
Sbjct: 118 DLAVNALSNSTTAGQAVTVELFLTLQ------------LVLCIFASTDERRGENPGTPA- 164
Query: 189 LEPVVVGMLILALGLSMGAN-CGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVV 247
+ +G + ALG +G + G +NPAR L P V + WV +
Sbjct: 165 ---LSIGFSV-ALGHLLGIHYTGCSMNPARSL-----------APAVVTGKFDDHWVFWI 209
Query: 248 APLVGATVGTATYQLLV---------ALHHPEGPEPAQDLVSAQ---HKASELETPAS 293
PLVGA +G+ Y ++ L +G EP D + +A EL +P S
Sbjct: 210 GPLVGAILGSLLYNYVLFPPAKSLSERLAVLKGLEPDTDWEEREVRRRQAVELHSPQS 267
>3M9I-A nrPDB
Length = 220
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 41/212 (19%)
Query: 60 LAGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATY 119
LA LA+ + G++SGAH+NPA + A + ++ ++ Y++ QLL A + Y
Sbjct: 40 LAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLY 99
Query: 120 VLYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILD 179
+VT P ++ P +S+ + ++ T ++ + A D
Sbjct: 100 ---------------SVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYD 144
Query: 180 RRNKGVPAGLEPVVVGMLILALGLSMGAN-------CGIPLNPARDLGPRLFTYVAGWGP 232
R G +G + LA+G S+ G +NPAR P + T
Sbjct: 145 ERRNG--------RLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILT------- 189
Query: 233 EVFSAGNGWWWVPVVAPLVGATVGTATYQLLV 264
F+ WV V P++GA +G+ Y L+
Sbjct: 190 RNFTNH----WVYWVGPVIGAGLGSLLYDFLL 217
>4NEF-A nrPDB
Length = 242
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 15 RIRSL-LARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVG 73
+RS+ +R AEFL + + G+ A+ + + + +A L + +
Sbjct: 3 ELRSIAFSRAVFAEFLATLLFVFFGLGS---ALNWPQALPSVLQIAMAFGLGIGTLVQAL 59
Query: 74 GNVSGAHLNPAFSLAMCIVG-RLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGG 132
G++SGAH+NPA ++A C+VG + ++ Y+ QLL A + L H+ G
Sbjct: 60 GHISGAHINPAVTVA-CLVGCHVSVLRAAFYVAAQLLGAVAGAA----LLHEITPADIRG 114
Query: 133 NLTVTG-PKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRR---NKGVPAG 188
+L V T + A +L+L L++ + A D R N G PA
Sbjct: 115 DLAVNALSNSTTAGQAVTVELFLTLQ------------LVLCIFASTDERRGENPGTPA- 161
Query: 189 LEPVVVGMLILALGLSMGAN-CGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVV 247
+ +G + ALG +G + G +NPAR L P V + WV +
Sbjct: 162 ---LSIGFSV-ALGHLLGIHYTGCSMNPARSL-----------APAVVTGKFDDHWVFWI 206
Query: 248 APLVGATVGTATYQ 261
PLVGA +G+ Y
Sbjct: 207 GPLVGAILGSLLYN 220
>3D9S-A nrPDB
Length = 266
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 96/240 (40%), Gaps = 31/240 (12%)
Query: 22 RQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVSGAHL 81
+ AEFL + + G+ + ++ T + LA LA+ G VSG H+
Sbjct: 13 KAVFAEFLATLIFVFFGLGSALKWPSALPT---ILQIALAFGLAIGTLAQALGPVSGGHI 69
Query: 82 NPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTGPKE 141
NPA +LA+ + ++ ++ Y+ QL+ A +G +LY A N G
Sbjct: 70 NPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAG---ILYGVAPLNARGNLAVNALNNN 126
Query: 142 TASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLILAL 201
T + +++ T L + + A D R P G + +G L + L
Sbjct: 127 TTQ------------GQAMVVELILTFQLALCIFASTDSRRTS-PVGSPALSIG-LSVTL 172
Query: 202 GLSMGAN-CGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTATY 260
G +G G +NPAR GP + FS + WV V P+VGA + Y
Sbjct: 173 GHLVGIYFTGCSMNPARSFGPAVVM-------NRFSPAH---WVFWVGPIVGAVLAAILY 222
>2W1P-A nrPDB
Length = 279
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 39/258 (15%)
Query: 27 EFLGVFVLMLLTQGAVAQAVTS-------GETKGNFFTMFLAGSLAVTIAIYVGGNVSGA 79
EF+G F L L + +AQ G + V + +++ VSG
Sbjct: 51 EFVGTF-LFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGG 109
Query: 80 HLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTGP 139
+LNPA +LA+ + +P + + Q+++ A+GA + P
Sbjct: 110 NLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAA----------------SAMTP 153
Query: 140 KETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLIL 199
E A FA S G + GT +L + +L + +++ P V+G+ +L
Sbjct: 154 GEIA--FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRAT--WFAPFVIGIALL 209
Query: 200 ALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTAT 259
L G LNPAR GP + + + W+ + P++GA + +
Sbjct: 210 IAHLICIYYTGAGLNPARSFGPAVAA----------RSFPNYHWIYWLGPILGAFLAYSI 259
Query: 260 YQLLVALHHPEGPEPAQD 277
+Q+ L++ + P QD
Sbjct: 260 WQMWKWLNY-QTTNPGQD 276
>6EM8-A nrPDB
Length = 818
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 158 NGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLILALGLSMG-ANCGIP--LN 214
+G LD V+G I ++ +L RR K P + VG +A GL+ N +P L
Sbjct: 176 DGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLK 235
Query: 215 PARDLGPRLFTYVAGWG-------------PEVFSAGNGWWWVPVVAPLVGA 253
R + + T VAG E+ AGN ++ + LVGA
Sbjct: 236 DKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQAGNVILFIDELHTLVGA 287
>6EMW-E nrPDB
Length = 181
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 157 NNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLILALGLSMG-ANCGIP--L 213
+G LD V+G I ++ +L RR K P + VG +A GL+ N +P L
Sbjct: 14 KDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETL 73
Query: 214 NPARDLGPRLFTYVAGWG-------------PEVFSAGNGWWWVPVVAPLVGA 253
R + + T VAG E+ AGN ++ + LVGA
Sbjct: 74 KDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQAGNVILFIDELHTLVGA 126
>2JZ4-A nrPDB
Length = 299
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 148 TYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLE 190
YP+ Y++ G D++ G+ LI+ +L + P GLE
Sbjct: 220 DYPSEYITAVEGTYDKIFGSDGLIITMLRFKTNKQTSAPFGLE 262
>1TXG-A nrPDB
Length = 335
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 138 GPKETA---SIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAG 188
G +ETA S F A + NG L ++LG G+ I + L+RR GV G
Sbjct: 237 GDRETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEG 290
>6IP5-3O nrPDB
Length = 125
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 PAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKG 53
PA + L+IR LAR L E L ++ L+++ AQ + + TKG
Sbjct: 70 PAVVSERLKIRGSLARAALQELLSKGLIKLVSKHR-AQVIYTRNTKG 115
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
6F7H-A nrPDB 315 2e-86
1J4N-A nrPDB 249 9e-67
1IH5-A nrPDB 248 2e-66
3IYZ-A nrPDB 242 2e-64
2ZZ9-A nrPDB 241 4e-64
1LDI-A nrPDB 225 2e-59
4OJ2-X nrPDB 216 1e-56
3C02-A nrPDB 213 7e-56
3CLL-A nrPDB 198 3e-51
3GD8-A nrPDB 197 4e-51
3D9S-A nrPDB 197 5e-51
4NEF-A nrPDB 194 4e-50
1YMG-A nrPDB 191 3e-49
3M9I-A nrPDB 177 6e-45
2EVU-A nrPDB 171 3e-43
3NE2-A nrPDB 163 1e-40
2W1P-A nrPDB 158 2e-39
3LLQ-A nrPDB 157 5e-39
2O9F-A nrPDB 151 2e-37
5I32-A nrPDB 151 3e-37
Sequences not found previously or not previously below threshold:
3CDI-A nrPDB 30 1.1
3H1C-A nrPDB 30 1.7
1WY0-A nrPDB 27 7.1
4KK2-A nrPDB 27 7.7
CONVERGED!
>6F7H-A nrPDB
Length = 301
Score = 315 bits (806), Expect = 2e-86, Method: Composition-based stats.
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MVFTQAPAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFL 60
MVFTQAPAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFL
Sbjct: 1 MVFTQAPAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFL 60
Query: 61 AGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYV 120
AGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYV
Sbjct: 61 AGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYV 120
Query: 121 LYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDR 180
LYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDR
Sbjct: 121 LYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDR 180
Query: 181 RNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG 240
RNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG
Sbjct: 181 RNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG 240
Query: 241 WWWVPVVAPLVGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
WWWVPVVAPLVGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK
Sbjct: 241 WWWVPVVAPLVGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
Query: 301 L 301
L
Sbjct: 301 L 301
>1J4N-A nrPDB
Length = 271
Score = 249 bits (636), Expect = 9e-67, Method: Composition-based stats.
Identities = 61/290 (21%), Positives = 117/290 (40%), Gaps = 33/290 (11%)
Query: 17 RSLLARQCLAEFLGVFVLMLLTQGAVAQAV------TSGETKGNFFTMFLAGSLAVTIAI 70
+ L R +AEFL + + + ++ G+ + + + LA L++
Sbjct: 7 KKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLA 66
Query: 71 YVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYT 130
G++SGAHLNPA +L + + ++ ++ +YI+ Q + A A+ + N
Sbjct: 67 QSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-- 124
Query: 131 GGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLE 190
S+ AP ++ G +++GT L++ +LA DRR + + G
Sbjct: 125 -------------SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDL-GGSG 170
Query: 191 PVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPL 250
P+ +G + L G +NPAR G + T+ W+ V P
Sbjct: 171 PLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH-----------NFQDHWIFWVGPF 219
Query: 251 VGATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
+GA + Y ++A + + + S Q + +L+ +E K
Sbjct: 220 IGAALAVLIYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDINSRVEMK 269
>1IH5-A nrPDB
Length = 269
Score = 248 bits (633), Expect = 2e-66, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 114/288 (39%), Gaps = 31/288 (10%)
Query: 17 RSLLARQCLAEFLGVFVLMLLTQGAVAQAV----TSGETKGNFFTMFLAGSLAVTIAIYV 72
+ L R +AEFL + + ++ G+ + + + LA L++
Sbjct: 7 KKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQS 66
Query: 73 GGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGG 132
G++SGAHLNPA +L + + ++ + +YI+ Q + A A+ + N G
Sbjct: 67 VGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGR 126
Query: 133 NLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPV 192
N G ++ G +++GT L++ +LA DRR + + G P+
Sbjct: 127 NDLADG---------------VNSGQGLGIEIIGTLQLVLCVLATTDRRRRDL-GGSAPL 170
Query: 193 VVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVG 252
+G+ + L G +NPAR G + T+ W+ V P +G
Sbjct: 171 AIGLSVALGHLLAIDYTGCGINPARSFGSAVITH-----------NFSNHWIFWVGPFIG 219
Query: 253 ATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
+ Y ++A + + + S Q + +L+ +E K
Sbjct: 220 GALAVLIYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDINSRVEMK 267
>3IYZ-A nrPDB
Length = 340
Score = 242 bits (616), Expect = 2e-64, Method: Composition-based stats.
Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 30/284 (10%)
Query: 20 LARQCLAEFLGVFVLMLLTQGAVAQAVTS-GETKGNFFTMFLAGSLAVTIAIYVGGNVSG 78
+ AEFL + + +LL+ G+ S + + L L++ + G++SG
Sbjct: 51 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISG 110
Query: 79 AHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTG 138
H+NPA ++AM ++ K YI Q L A +G Y+ VT
Sbjct: 111 GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYL---------------VTP 155
Query: 139 PKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLI 198
P + T L+ +G L +++ T L+ + A D + V G + +G +
Sbjct: 156 PSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDV-TGSVALAIGFSV 214
Query: 199 LALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTA 258
L G +NPAR GP + + W W+ V P++GA + A
Sbjct: 215 AIGHLFAINYTGASMNPARSFGPAVI--MGNWEN---------HWIYWVGPIIGAVLAGA 263
Query: 259 TYQLLVAL--HHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
Y+ + + A + Q K S +E + +E +
Sbjct: 264 LYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETE 307
>2ZZ9-A nrPDB
Length = 301
Score = 241 bits (614), Expect = 4e-64, Method: Composition-based stats.
Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 30/284 (10%)
Query: 20 LARQCLAEFLGVFVLMLLTQGAVAQAVTS-GETKGNFFTMFLAGSLAVTIAIYVGGNVSG 78
+ AEFL + + +LL+ G+ S + + L L++ + G++SG
Sbjct: 12 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISG 71
Query: 79 AHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTG 138
H+NPA ++AM ++ K YI Q L A +G Y+ VT
Sbjct: 72 GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYL---------------VTP 116
Query: 139 PKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLI 198
P + T L+ +G L +++ T L+ + A D + V G + +G +
Sbjct: 117 PSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDV-TGSVALAIGFSV 175
Query: 199 LALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTA 258
L G +NPAR GP + + W W+ V P++GA + A
Sbjct: 176 AIGHLFAINYTGASMNPARSFGPAVI--MGNWEN---------HWIYWVGPIIGAVLAGA 224
Query: 259 TYQLLVAL--HHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
Y+ + + A + Q K S +E + +E +
Sbjct: 225 LYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETE 268
>1LDI-A nrPDB
Length = 281
Score = 225 bits (574), Expect = 2e-59, Method: Composition-based stats.
Identities = 95/283 (33%), Positives = 152/283 (53%), Gaps = 12/283 (4%)
Query: 18 SLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVS 77
S L QC+AEFLG +L+ G VA +G + G + + + L V +AIY+ VS
Sbjct: 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWE-ISVIWGLGVAMAIYLTAGVS 63
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
GAHLNPA ++A+ + K+ +I+ Q+ AFCA+ Y LY++ ++ + V
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVR 123
Query: 138 GPKET---ASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVV 194
G E+ A F+TYP P+++ F +++ T +L+ +LA+ D N L P+++
Sbjct: 124 GSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLI 183
Query: 195 GMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG--WWWVPVVAPLVG 252
G+LI +G SMG G +NPARD GP++F ++AGWG F+ G ++ VP+ P+VG
Sbjct: 184 GLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVG 243
Query: 253 ATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQ 295
A VG Y+ L+ H P D+ + K + + A
Sbjct: 244 AIVGAFAYRKLIGRHLP------CDICVVEEKETTTPSEQKAS 280
>4OJ2-X nrPDB
Length = 274
Score = 216 bits (549), Expect = 1e-56, Method: Composition-based stats.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 43/295 (14%)
Query: 15 RIRSL-LARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVG 73
+RS+ +R AEFL + + G+ A+ + + + +A L + +
Sbjct: 6 ELRSIAFSRAVFAEFLATLLFVFFGLGS---ALNWPQALPSVLQIAMAFGLGIGTLVQAL 62
Query: 74 GNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGN 133
G++SGAH+NPA ++A + + ++ Y+ QLL A + L H+ G+
Sbjct: 63 GHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAA----LLHEITPADIRGD 118
Query: 134 LTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVV 193
L V + + ++ T L++ + A D R P G +
Sbjct: 119 LAVNALSNST-----------TAGQAVTVELFLTLQLVLCIFASTDERRGENP-GTPALS 166
Query: 194 VGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGA 253
+G + L G +NPAR L P + + WV + PLVGA
Sbjct: 167 IGFSVALGHLLGIHYTGCSMNPARSLAPAVV-----------TGKFDDHWVFWIGPLVGA 215
Query: 254 TVGTATYQLLV---------ALHHPEGPEPAQDLVSAQ---HKASELETPASAQM 296
+G+ Y ++ L +G EP D + +A EL +P S
Sbjct: 216 ILGSLLYNYVLFPPAKSLSERLAVLKGLEPDTDWEEREVRRRQAVELHSPQSLPR 270
>3C02-A nrPDB
Length = 258
Score = 213 bits (542), Expect = 7e-56, Method: Composition-based stats.
Identities = 92/277 (33%), Positives = 144/277 (51%), Gaps = 21/277 (7%)
Query: 13 HLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYV 72
H+ R+ + EFLG FVLM L +GA A T+G + G+++ + L LAV I V
Sbjct: 2 HMLFYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLS-GDWYKLCLGWGLAVFFGILV 60
Query: 73 GGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGG 132
+SGAHLN A S+ + + + K+P+Y QLL AF + Y LYH + N
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISN---- 116
Query: 133 NLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLE-P 191
K + T P +SL F ++++ TG+L++ +L ++D G L+
Sbjct: 117 ------SKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLS 170
Query: 192 VVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLV 251
VVG++IL +G++ G N G LNP+RDLG R + +A +G + F+ N ++WVP+VAP V
Sbjct: 171 SVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIA-YGKDTFTKDNFYFWVPLVAPCV 229
Query: 252 GATVGTATYQLLVALHHPEGPEPAQDLVSAQHKASEL 288
G+ V Y ++ P DL + + +L
Sbjct: 230 GSVVFCQFYDKVIC--------PLVDLANNEKDGVDL 258
>3CLL-A nrPDB
Length = 300
Score = 198 bits (502), Expect = 3e-51, Method: Composition-based stats.
Identities = 52/272 (19%), Positives = 103/272 (37%), Gaps = 28/272 (10%)
Query: 6 APAEIMGHLRIRSLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLA 65
AP +G L++ S R +AEF+ + + +T V G+ + +A +
Sbjct: 43 APFFDLGELKLWS-FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFG 101
Query: 66 --VTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYH 123
+ + +Y +SG H+NPA + + + ++ ++ +Y++ Q L A C G
Sbjct: 102 GMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMK 161
Query: 124 DALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNK 183
+ GG A A + +++GT +L+ + + D +
Sbjct: 162 GPYNQFGGG--------------ANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRS 207
Query: 184 GVP---AGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNG 240
L P+ +G + + L+ G +NPAR G + +
Sbjct: 208 ARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIF--------NSNKVWD 259
Query: 241 WWWVPVVAPLVGATVGTATYQLLVALHHPEGP 272
W+ V P +GA V A +Q ++ +
Sbjct: 260 DQWIFWVGPFIGAAVAAAYHQYVLRAAAIKAL 291
>3GD8-A nrPDB
Length = 223
Score = 197 bits (501), Expect = 4e-51, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 28/248 (11%)
Query: 20 LARQCLAEFLGVFVLMLLTQGAVAQAVTS-GETKGNFFTMFLAGSLAVTIAIYVGGNVSG 78
+ AEFL + + +LL+ G+ + + + L L++ + G++SG
Sbjct: 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISG 62
Query: 79 AHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTG 138
H+NPA ++AM ++ K YI Q L A +G Y+ VT
Sbjct: 63 GHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYL---------------VTP 107
Query: 139 PKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLI 198
P + T L+ +G L +++ T L+ + A D + V + + +G +
Sbjct: 108 PSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSV 166
Query: 199 LALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTA 258
L G +NPAR GP + + W W+ V P++GA +
Sbjct: 167 AIGHLFAINYTGASMNPARSFGPAVI--MGNWEN---------HWIYWVGPIIGAVLAGG 215
Query: 259 TYQLLVAL 266
Y+ +
Sbjct: 216 LYEYVFCP 223
>3D9S-A nrPDB
Length = 266
Score = 197 bits (500), Expect = 5e-51, Method: Composition-based stats.
Identities = 55/282 (19%), Positives = 96/282 (34%), Gaps = 29/282 (10%)
Query: 20 LARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVSGA 79
+ AEFL + + G+ A+ + LA LA+ G VSG
Sbjct: 11 FLKAVFAEFLATLIFVFFGLGS---ALKWPSALPTILQIALAFGLAIGTLAQALGPVSGG 67
Query: 80 HLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTGP 139
H+NPA +LA+ + ++ ++ Y+ QL+ A +G Y V
Sbjct: 68 HINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYG---------------VAPL 112
Query: 140 KETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLIL 199
++ + + +++ T L + + A D R P G + +G+ +
Sbjct: 113 NARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRT-SPVGSPALSIGLSVT 171
Query: 200 ALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTAT 259
L G +NPAR GP + WV V P+VGA +
Sbjct: 172 LGHLVGIYFTGCSMNPARSFGPAVVMNRFSPA----------HWVFWVGPIVGAVLAAIL 221
Query: 260 YQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECKL 301
Y L+ + E + + E + +L
Sbjct: 222 YFYLLFPNSLSLSERVAIIKGTYEPDEDWEEQREERKKTMEL 263
>4NEF-A nrPDB
Length = 242
Score = 194 bits (493), Expect = 4e-50, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 102/269 (37%), Gaps = 31/269 (11%)
Query: 15 RIRSL-LARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVG 73
+RS+ +R AEFL + + G+ A+ + + + +A L + +
Sbjct: 3 ELRSIAFSRAVFAEFLATLLFVFFGLGS---ALNWPQALPSVLQIAMAFGLGIGTLVQAL 59
Query: 74 GNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGN 133
G++SGAH+NPA ++A + + ++ Y+ QLL A + L H+ G+
Sbjct: 60 GHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAA----LLHEITPADIRGD 115
Query: 134 LTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVV 193
L V + + ++ T L++ + A D R P G +
Sbjct: 116 LAVNALSNST-----------TAGQAVTVELFLTLQLVLCIFASTDERRGENP-GTPALS 163
Query: 194 VGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGA 253
+G + L G +NPAR L P + + WV + PLVGA
Sbjct: 164 IGFSVALGHLLGIHYTGCSMNPARSLAPAVV-----------TGKFDDHWVFWIGPLVGA 212
Query: 254 TVGTATYQLLVALHHPEGPEPAQDLVSAQ 282
+G+ Y ++ E L +
Sbjct: 213 ILGSLLYNYVLFPPAKSLSERLAVLKGLE 241
>1YMG-A nrPDB
Length = 263
Score = 191 bits (485), Expect = 3e-49, Method: Composition-based stats.
Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 30/283 (10%)
Query: 18 SLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVS 77
+ R AEF + GA ++ + + LA LA+ + G++S
Sbjct: 7 ASFWRAICAEFFASLFYVFFGLGA---SLRWAPGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
GAH+NPA + A + ++ ++ Y++ QLL A + Y +VT
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLY---------------SVT 108
Query: 138 GPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGML 197
P ++ P +S+ + ++ T ++ + A D R G + + VG
Sbjct: 109 PPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFS 167
Query: 198 ILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGT 257
+ L G +NPAR P + + WV V P++GA +G+
Sbjct: 168 LTLGHLFGMYYTGAGMNPARSFAPAIL-----------TRNFTNHWVYWVGPVIGAGLGS 216
Query: 258 ATYQLLVALHHPEGPEPAQDLVSAQHKASELETPASAQMLECK 300
Y L+ E L ++ S + + + +E K
Sbjct: 217 LLYDFLLFPRLKSVSERLSILKGSRPSESNGQPEVTGEPVELK 259
>3M9I-A nrPDB
Length = 220
Score = 177 bits (448), Expect = 6e-45, Method: Composition-based stats.
Identities = 53/250 (21%), Positives = 94/250 (37%), Gaps = 30/250 (12%)
Query: 18 SLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVS 77
+ R AEF + GA + + + LA LA+ + G++S
Sbjct: 1 ASFWRAIFAEFFATLFYVFFGLGASLR---WAPGPLHVLQVALAFGLALATLVQAVGHIS 57
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
GAH+NPA + A + ++ ++ Y++ QLL A + Y +VT
Sbjct: 58 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLY---------------SVT 102
Query: 138 GPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGML 197
P ++ P +S+ + ++ T ++ + A D R G + + VG
Sbjct: 103 PPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFS 161
Query: 198 ILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGT 257
+ L G +NPAR P + + WV V P++GA +G+
Sbjct: 162 LTLGHLFGMYYTGAGMNPARSFAPAIL-----------TRNFTNHWVYWVGPVIGAGLGS 210
Query: 258 ATYQLLVALH 267
Y L+
Sbjct: 211 LLYDFLLFPR 220
>2EVU-A nrPDB
Length = 246
Score = 171 bits (433), Expect = 3e-43, Method: Composition-based stats.
Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 40/265 (15%)
Query: 19 LLARQCLAEFLGVFVLMLLTQGAVA--QAVTSGETKG--------------NFFTMFLAG 62
L ++C+AEF+G F+L+ G+ A + SG T ++ + LA
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 63 SLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLY 122
A+ +IY GN+SG H+NPA ++ + V + P ++ YI+ QLL A A G+ L
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGA--AFGSFIFLQ 120
Query: 123 HDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRN 182
+ T G + AT P P +S L +V+GT +L++ ++ I
Sbjct: 121 CAGIGAATVG-----------GLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDER 169
Query: 183 KGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWW 242
P G +++G+ + + ++G G LNPAR GP L +F+ + W
Sbjct: 170 --APKGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYL-------NDMIFAGTDLWN 220
Query: 243 W--VPVVAPLVGATVGTATYQLLVA 265
+ + V+ P+VGA + TYQ L +
Sbjct: 221 YYSIYVIGPIVGAVLAALTYQYLTS 245
>3NE2-A nrPDB
Length = 246
Score = 163 bits (411), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 19 LLARQCLAEFLGVFVLMLLTQGA--VAQAVTSGETKG--------------NFFTMFLAG 62
LA++ AE +G F+L+ GA + + +G K ++F + +A
Sbjct: 4 TLAKRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAF 63
Query: 63 SLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLY 122
+LA+ IY G +SGAH+NPA ++A+ +GR P ++ YI+ Q + A S
Sbjct: 64 ALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACV 123
Query: 123 HDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRN 182
A + AT P P + L + +GT +L++ ++ +
Sbjct: 124 GPAA-------------ATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDER 170
Query: 183 KGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWW 242
P G +V+G+ + + ++G G LNPAR GP L + G ++
Sbjct: 171 --APPGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQ------YF 222
Query: 243 WVPVVAPLVGATVGTATYQLL 263
+ V+ P+VGA Y L
Sbjct: 223 PIYVIGPIVGAVAAAWLYNYL 243
>2W1P-A nrPDB
Length = 279
Score = 158 bits (399), Expect = 2e-39, Method: Composition-based stats.
Identities = 53/262 (20%), Positives = 100/262 (38%), Gaps = 39/262 (14%)
Query: 23 QCLAEFLGVFVLMLLTQGAVAQAVTS-------GETKGNFFTMFLAGSLAVTIAIYVGGN 75
EF+G F+ L + +AQ G + V + +++
Sbjct: 47 AMSGEFVGTFLF-LWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYR 105
Query: 76 VSGAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLT 135
VSG +LNPA +LA+ + +P + + Q+++ A+GA + +
Sbjct: 106 VSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI--------- 156
Query: 136 VTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVG 195
FA S G + GT +L + +L + +++ P V+G
Sbjct: 157 ---------AFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRAT--WFAPFVIG 205
Query: 196 MLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATV 255
+ +L L G LNPAR GP + + + W+ + P++GA +
Sbjct: 206 IALLIAHLICIYYTGAGLNPARSFGPAVAA----------RSFPNYHWIYWLGPILGAFL 255
Query: 256 GTATYQLLVALHHPEGPEPAQD 277
+ +Q+ L++ + P QD
Sbjct: 256 AYSIWQMWKWLNY-QTTNPGQD 276
>3LLQ-A nrPDB
Length = 256
Score = 157 bits (397), Expect = 5e-39, Method: Composition-based stats.
Identities = 69/245 (28%), Positives = 105/245 (42%), Gaps = 20/245 (8%)
Query: 19 LLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVSG 78
++ R+ LAEF G F L+ G+ A E F + LA L V Y G +SG
Sbjct: 28 VMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISG 87
Query: 79 AHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTG 138
H NPA S+ + + GR P L Y++ Q+ A A+ A YV+ GG G
Sbjct: 88 GHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGG-FASNG 146
Query: 139 PKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGMLI 198
E + SL + L +++ T ++ +L + VPAG P+ +G+ +
Sbjct: 147 YGEHSP-------GGYSLVSALLIEIILTAFFLIVILGST---HGRVPAGFAPIAIGLAL 196
Query: 199 LALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTA 258
+ L +NPAR G LF V GW + W+ +AP+VG G
Sbjct: 197 TLIHLISIPVTNTSVNPARSTGQALF--VGGWALQQL-------WLFWLAPIVGGAAGAV 247
Query: 259 TYQLL 263
++L
Sbjct: 248 IWKLF 252
>2O9F-A nrPDB
Length = 234
Score = 151 bits (382), Expect = 2e-37, Method: Composition-based stats.
Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 18/247 (7%)
Query: 18 SLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVS 77
S + R+ AE G F L+ G+ A E F + LA L V + G++S
Sbjct: 2 SHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHIS 61
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
G H NPA ++ + GR P ++ Y++ Q++ A+ Y++
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFD------AA 115
Query: 138 GPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGML 197
++ + + S+ + + +++ + ++ + D K PAG P+ +G+
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD---KFAPAGFAPIAIGLA 172
Query: 198 ILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGT 257
+ L +NPAR +F GW E W V P+VG +G
Sbjct: 173 CTLIHLISIPVTNTSVNPARSTAVAIFQ--GGWALEQL-------WFFWVVPIVGGIIGG 223
Query: 258 ATYQLLV 264
Y+ L+
Sbjct: 224 LIYRTLL 230
>5I32-A nrPDB
Length = 275
Score = 151 bits (382), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 33/243 (13%)
Query: 22 RQCLAEFLGVFVLMLLTQGAVAQAVTSGETK----GNFFTMFLAGSLAVTIAIYVGGNVS 77
R LAEF+ + + G+ + + A+ +A+ +G N+S
Sbjct: 44 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANIS 103
Query: 78 GAHLNPAFSLAMCIVGRLPWVKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVT 137
G H+NPA + + + G++ + Y + QLL + A L Y G L V
Sbjct: 104 GGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAAC---------FLLKYVTGGLAVP 154
Query: 138 GPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRRNKGVPAGLEPVVVGML 197
A L G + +++ T L+ + A KG + P+ +G++
Sbjct: 155 T---------HSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLI 205
Query: 198 ILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGT 257
+ A L+ G G +NPAR GP + WV V PL+G +
Sbjct: 206 VGANILAAGPFSGGSMNPARSFGPAVAA-----------GDFSGHWVYWVGPLIGGGLAG 254
Query: 258 ATY 260
Y
Sbjct: 255 LIY 257
>3CDI-A nrPDB
Length = 723
Score = 30.2 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 207 ANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTATYQLLVAL 266
+ +NP + P + + S +P P+ A VG Q ++
Sbjct: 120 IATVVSVNP--QVNPDIVAMIGASAALSLSG------IPFNGPIGAARVGYINDQYVLNP 171
Query: 267 HHPEGPEPAQDLVSAQHKASELETPASAQML 297
E E DLV A +A+ L + AQ+L
Sbjct: 172 TQDELKESKLDLVVAGTEAAVLMVESEAQLL 202
>3H1C-A nrPDB
Length = 549
Score = 29.8 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 207 ANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGTATYQLLVAL 266
+ +NP + P + + S +P P+ A VG Q ++
Sbjct: 114 IATVVSVNP--QVNPDIVAMIGASAALSLSG------IPFNGPIGAARVGYINDQYVLNP 165
Query: 267 HHPEGPEPAQDLVSAQHKASELETPASAQML 297
E E DLV A +A+ L + AQ+L
Sbjct: 166 TQDELKESKLDLVVAGTEAAVLMVESEAQLL 196
>1WY0-A nrPDB
Length = 342
Score = 27.5 bits (59), Expect = 7.1, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 27/81 (33%)
Query: 120 VLYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILD 179
VLY A G V S A P ++ +++ L+ + +D
Sbjct: 33 VLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMDMD 92
Query: 180 RRNKGVPAGLEPVVVGMLILA 200
+G P V M ILA
Sbjct: 93 ETRRGKPTVHRIWGVNMAILA 113
>4KK2-A nrPDB
Length = 366
Score = 27.5 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 27/87 (31%)
Query: 122 YHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAILDRR 181
Y G V + T +LS G+ + L L++ +
Sbjct: 66 YTVPGGKMVRGYSVVDSYQLLKGEELTDDEIFLSSALGWCIEWLQAYFLVLDDIMDESHT 125
Query: 182 NKGVPAGLEPVVVGMLILALGLSMGAN 208
+G P VGM+ G+ + +
Sbjct: 126 RRGQPCWFRLPKVGMIAANDGILLRNH 152
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.316 0.121 0.309
Lambda K H
0.267 0.0371 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,732,604
Number of Sequences: 36641
Number of extensions: 357174
Number of successful extensions: 1106
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 91
length of query: 301
length of database: 10,336,785
effective HSP length: 97
effective length of query: 204
effective length of database: 6,782,608
effective search space: 1383652032
effective search space used: 1383652032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (27.1 bits)