BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q96H20
         (258 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3CUQ-A nrPDB                                                          481   e-136
1U5T-A nrPDB                                                          161   3e-40
4B2T-D nrPDB                                                           31   0.63 
3DKB-A nrPDB                                                           30   0.92 
5TEA-A nrPDB                                                           30   1.5  
1UMK-A nrPDB                                                           29   1.6  
4PEV-A nrPDB                                                           28   2.7  
3CUQ-B nrPDB                                                           28   4.1  
1II2-A nrPDB                                                           28   4.1  
4HDT-A nrPDB                                                           28   5.1  
1NOL-A nrPDB                                                           27   7.5  
2WFP-A nrPDB                                                           27   8.5  
2I5B-A nrPDB                                                           27   8.7  
5DWU-B nrPDB                                                           27   9.9  

>3CUQ-A nrPDB
          Length = 234

 Score =  481 bits (1239), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 25  GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGK 84
           GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGK
Sbjct: 1   GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGK 60

Query: 85  GFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL 144
           GFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL
Sbjct: 61  GFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL 120

Query: 145 IRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKW 204
           IRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKW
Sbjct: 121 IRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKW 180

Query: 205 ETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP 258
           ETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
Sbjct: 181 ETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP 234


>1U5T-A nrPDB
          Length = 233

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 133/233 (57%), Gaps = 7/233 (3%)

Query: 9   GAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQF 68
           G  A  +L + KY +    + E Q  ++  QL +F+  L EFA KH  E++ +PEFR +F
Sbjct: 5   GLAAFDELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKF 64

Query: 69  QDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQV 128
             MC++IG+DPL+        +  V DFYYE+ +++IE+C   K  NGG+I+ +EL +  
Sbjct: 65  MHMCSSIGIDPLSLFDRD-KHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVH 123

Query: 129 LKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAE 188
            +       +V  DDL ++I  LK+L   F I  + G   ++SVP EL  D T +L++  
Sbjct: 124 FR-----KLNVGLDDLEKSIDMLKSLEC-FEIFQIRGKKFLRSVPNELTSDQTKILEICS 177

Query: 189 KNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFT 241
             GY ++S +KA+L WE  R++  L+ ++  GL W+D Q   EA YW P+  T
Sbjct: 178 ILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPSWIT 230


>4B2T-D nrPDB
          Length = 542

 Score = 30.8 bits (68), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 50  FASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQ 103
           F +K K  + K+ E R   + +C TIG  P+A    F ++MLG  +   E+ + 
Sbjct: 319 FLNKMKIMVVKDIE-REDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLN 371


>3DKB-A nrPDB
          Length = 390

 Score = 30.0 bits (66), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 120 TLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMD 179
           +LEE+H  VL    +    V  D ++R+++     G+ F  + VGG YL    PA+    
Sbjct: 210 SLEEIHIFVLCNILRRPIIVISDKMLRSLES----GSNFAPLKVGGIYLPLHWPAQECYR 265

Query: 180 HTVVL 184
           + +VL
Sbjct: 266 YPIVL 270


>5TEA-A nrPDB
          Length = 185

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 79  PLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGG--LITLEELHQQVLK 130
           PLA+G    + ++GV  F  +  V    VC+    RN G    TL +L QQ++K
Sbjct: 88  PLATGVFLEARVIGVMKFVDDGEVDDKIVCVPADDRNNGNAYKTLSDLPQQLIK 141


>1UMK-A nrPDB
          Length = 275

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 128 VLKGRGKFA--QDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVV 183
           V +G+GKFA   D   + +IR +K +  +  G GI P+    +I+++  + + DHTV 
Sbjct: 124 VYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPM--LQVIRAIMKDPD-DHTVC 178


>4PEV-A nrPDB
          Length = 422

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 103 QIIEVCLALKHR---NGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKA 153
           +++E+ ++ + +   N G   +EEL Q+++ G  KF      D     I++LKA
Sbjct: 360 KVVEIVMSQREKWISNDGWRLVEELKQKIISGEIKFVTPQDHDTYDSIIEELKA 413


>3CUQ-B nrPDB
          Length = 218

 Score = 28.1 bits (61), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 66  VQFQDMCATIGV-DPLASGKGFWSEMLGVGDFYY-ELGVQIIEVCLALKHRNGGLITLEE 123
           ++F+    ++G+ +P+        E  G G  Y+ +L  Q+  +        GG+++L E
Sbjct: 47  IRFKSYLLSMGIANPVTR------ETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTE 100

Query: 124 LHQQVLKGRGKFAQDVSQDDLIRAIKKLKAL 154
           ++  V + RG   + +S +DL+ A K L+AL
Sbjct: 101 VYCLVNRARG--MELLSPEDLVNACKMLEAL 129


>1II2-A nrPDB
          Length = 524

 Score = 28.1 bits (61), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 211 QVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITA---EEAREALP 258
           +V EHLL    AW D++   E    L A+F + +S    A   +E + A+P
Sbjct: 466 KVPEHLLNPRKAWKDVRQFNETSKELVAMFQESFSARFAAKASQEMKSAVP 516


>4HDT-A nrPDB
          Length = 353

 Score = 27.7 bits (60), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 157 GFGIIP-VGGTYLIQSVPAELNM 178
           G G IP VGGTYL+   P +L +
Sbjct: 144 GIGFIPDVGGTYLLSRAPGKLGL 166


>1NOL-A nrPDB
          Length = 628

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 19  AKYKERGTVLAEDQLAQMSKQLDMFKTNL---EEFASKHKQEIRKNPEFRVQFQDMCATI 75
            KY E G  +  D+L + + +LD FKT+L   +    +H  +       +  F+D+   +
Sbjct: 465 PKYDELGNEIKADELRRTAIELDKFKTDLHPGKNTVVRHSLDSSVTLSHQPTFEDLLHGV 524

Query: 76  GVD 78
           G++
Sbjct: 525 GLN 527


>2WFP-A nrPDB
          Length = 394

 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 169 IQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQA 228
           +Q V  E+  +   VL+      Y+ + E+ A++K+E + A ++L   +K G A LD   
Sbjct: 261 LQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFEPKPAGELLTAPVKSG-AELDFPI 319

Query: 229 P 229
           P
Sbjct: 320 P 320


>2I5B-A nrPDB
          Length = 271

 Score = 26.9 bits (58), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 142 DDLIRAIKKLKALGTGFGIIPVGG 165
           DD+I A KK+ ALG  + +I  GG
Sbjct: 158 DDMIEAAKKIHALGAQYVVITGGG 181


>5DWU-B nrPDB
          Length = 203

 Score = 26.9 bits (58), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 161 IPVG-----GTYLIQSVP--AELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVL 213
           IPV      G Y++   P  AE ++  +V +Q+A  +  VT      SL+WET + R   
Sbjct: 68  IPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMR--Y 125

Query: 214 EHL 216
           EH+
Sbjct: 126 EHI 128


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3CUQ-A nrPDB                                                          387   e-108
1U5T-A nrPDB                                                          360   e-100

Sequences not found previously or not previously below threshold:

5N5D-A nrPDB                                                           29   1.6  
3DDM-A nrPDB                                                           28   2.7  
3F6W-A nrPDB                                                           28   3.0  
3QLB-A nrPDB                                                           28   4.0  
5Z0R-A nrPDB                                                           28   5.5  
4B2T-D nrPDB                                                           28   5.5  
5HKX-A nrPDB                                                           28   5.8  
5HKY-A nrPDB                                                           27   6.3  
5Y83-A nrPDB                                                           27   6.8  
5IYC-M nrPDB                                                           27   7.5  
3EUH-C nrPDB                                                           27   7.6  
3U43-B nrPDB                                                           27   9.6  


CONVERGED!
>3CUQ-A nrPDB
          Length = 234

 Score =  387 bits (995), Expect = e-108,   Method: Composition-based stats.
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 25  GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGK 84
           GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGK
Sbjct: 1   GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGK 60

Query: 85  GFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL 144
           GFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL
Sbjct: 61  GFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL 120

Query: 145 IRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKW 204
           IRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKW
Sbjct: 121 IRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKW 180

Query: 205 ETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP 258
           ETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
Sbjct: 181 ETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP 234


>1U5T-A nrPDB
          Length = 233

 Score =  360 bits (925), Expect = e-100,   Method: Composition-based stats.
 Identities = 85/233 (36%), Positives = 133/233 (57%), Gaps = 7/233 (3%)

Query: 9   GAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQF 68
           G  A  +L + KY +    + E Q  ++  QL +F+  L EFA KH  E++ +PEFR +F
Sbjct: 5   GLAAFDELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKF 64

Query: 69  QDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQV 128
             MC++IG+DPL+        +  V DFYYE+ +++IE+C   K  NGG+I+ +EL +  
Sbjct: 65  MHMCSSIGIDPLSLFDRD-KHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVH 123

Query: 129 LKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAE 188
            +       +V  DDL ++I  LK+L   F I  + G   ++SVP EL  D T +L++  
Sbjct: 124 FR-----KLNVGLDDLEKSIDMLKSLEC-FEIFQIRGKKFLRSVPNELTSDQTKILEICS 177

Query: 189 KNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFT 241
             GY ++S +KA+L WE  R++  L+ ++  GL W+D Q   EA YW P+  T
Sbjct: 178 ILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPSWIT 230


>5N5D-A nrPDB
          Length = 226

 Score = 29.3 bits (64), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 182 VVLQLAEKNGYVTVSEIKA--------SLKWETERARQVLEHLLKEGLAWLDLQAPGEAH 233
            +L++    GY ++   +A        +++WE   A      L + G+A L  Q  G A 
Sbjct: 64  RILEIGTFGGYSSIWLARALPPDGRLVTIEWERSFAESAASRLAEAGVAHLVEQHVGRAL 123

Query: 234 YWLPAL 239
             LP L
Sbjct: 124 DILPTL 129


>3DDM-A nrPDB
          Length = 392

 Score = 28.5 bits (62), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 179 DHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLD--LQAPGEAHYW 235
           D    L + E  G  T     A+  W+  RARQ+ + L    L WL+  L+A   A  W
Sbjct: 185 DVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEW 243


>3F6W-A nrPDB
          Length = 83

 Score = 28.5 bits (62), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 12 AKKKLAEAKYKERGTVLAEDQLAQ--MSKQLDMFKTNLEEFASK-HKQEIRKNPEFRVQF 68
          A K +  A+Y+    +L E + A     K+L       + F SK    E R +    ++F
Sbjct: 3  ATKTIHNARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDV---IEF 59

Query: 69 QDMCATIGVDPLAS 82
           D C  IG DP A 
Sbjct: 60 MDFCRGIGTDPYAL 73


>3QLB-A nrPDB
          Length = 748

 Score = 28.1 bits (61), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%)

Query: 5   GVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEF 64
           G  AG +AK+ L+  K     + + +        Q+D  +      A ++   ++ N   
Sbjct: 78  GPQAGYVAKRSLSGTKTDASLSEIPQSISVITRDQMDAQQVQSVNEALRYTAGVQANTTA 137

Query: 65  RVQFQDMCATIGVD 78
             Q  D  +  G D
Sbjct: 138 ASQRFDTLSIRGFD 151


>5Z0R-A nrPDB
          Length = 445

 Score = 27.7 bits (60), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 149 KKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLK----W 204
           + LK   T   + P GG   ++ +PA L + H  +  +     ++  + IK SL     W
Sbjct: 360 EALKDAQTRITVSPFGG---LKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGLINRW 416

Query: 205 ETERARQVLE 214
            +   ++ +E
Sbjct: 417 GSVGKKEAME 426


>4B2T-D nrPDB
          Length = 542

 Score = 27.7 bits (60), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 22  KERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLA 81
           K+         L Q S   D        F +K K  + K+ E R   + +C TIG  P+A
Sbjct: 291 KQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIE-REDIEFICKTIGTKPVA 349

Query: 82  SGKGFWSEMLGVGDFYYELGV 102
               F ++MLG  +   E+ +
Sbjct: 350 HVDQFTADMLGSAELAEEVSL 370


>5HKX-A nrPDB
          Length = 392

 Score = 27.7 bits (60), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 22  KERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATI-GVDPL 80
            E   V  E+ + +  + + +FK   E    ++ Q  R   +  + F  M A + G+ P 
Sbjct: 69  NEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPS 128

Query: 81  ASGKGF 86
              +G 
Sbjct: 129 GLFQGD 134


>5HKY-A nrPDB
          Length = 308

 Score = 27.3 bits (59), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 22  KERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATI-GVDPL 80
            E   V  E+ + +  + + +FK   E    ++ Q  R   +  + F  M A + G+ P 
Sbjct: 69  NEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPS 128

Query: 81  ASGKGF 86
              +G 
Sbjct: 129 GLFQGD 134


>5Y83-A nrPDB
          Length = 451

 Score = 27.3 bits (59), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 202 LKWETERARQVLEHLLKEG--LAWLDLQAPGEAHYWLPALFT---DLYSQEITAEEAREA 256
           L W   R    +E     G  L W DL A G ++ WL  + T     Y+  +T+++AR A
Sbjct: 328 LLWSVIR--YYVEEFAYSGSFLIWKDLSAGGFSNNWLFLVITIVASYYTTLLTSQDARTA 385


>5IYC-M nrPDB
          Length = 316

 Score = 27.3 bits (59), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 5   GVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKT 45
           G G GA +  +   +KY+ R T+ + D        ++ FK 
Sbjct: 85  GKGTGAASFDEFGNSKYQNRRTMSSSD-----RAMMNAFKE 120


>3EUH-C nrPDB
          Length = 234

 Score = 27.3 bits (59), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 40 LDMFKTNLEEFASKHKQEIRKNPE 63
          L  F+  LEEF +++  E+ + PE
Sbjct: 47 LMDFQEYLEEFYARYNVELIRAPE 70


>3U43-B nrPDB
          Length = 134

 Score = 26.9 bits (58), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 4  RGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPE 63
          +  G G     K  +   K+ G  + +    ++  +   FK N ++F  K  +E+ K+P+
Sbjct: 10 KATGKGKPVGDKWLDDAGKDSGAPIPDRIADKLRDK--EFK-NFDDFRKKFWEEVSKDPD 66

Query: 64 FRVQFQ 69
             QF+
Sbjct: 67 LSKQFK 72


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.319    0.135    0.377 

Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,103,750
Number of Sequences: 36641
Number of extensions: 395290
Number of successful extensions: 1342
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 42
length of query: 258
length of database: 10,336,785
effective HSP length: 95
effective length of query: 163
effective length of database: 6,855,890
effective search space: 1117510070
effective search space used: 1117510070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)