BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q93YN9 (451 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3UDT-A nrPDB 913 0.0 5MWL-A nrPDB 105 6e-23 5XU6-A nrPDB 100 2e-21 2RGN-B nrPDB 30 2.1 1Z83-A nrPDB 29 4.7 3ADK-A nrPDB 29 4.8 3SDO-A nrPDB 28 9.7 >3UDT-A nrPDB Length = 493 Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/451 (98%), Positives = 448/451 (99%) Query: 1 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNANGVVSV 60 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKN+NGVVSV Sbjct: 35 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVVSV 94 Query: 61 LTSDEQHLWRENNELISSPNKEVLEQRYVKNVIIPLLGPKHVDAGVRVSVSKEFLECVDK 120 LTSDEQHLWRENNELISSPNKEVLEQRYV+NVIIPLLGPKHVDAGVRVSVSKEFLECVDK Sbjct: 95 LTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDK 154 Query: 121 KVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGISSGGDCISVEIKPKCGFLPTSRFI 180 KVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGI+SGGDCISVEIKPKCGFLPTSRFI Sbjct: 155 KVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFI 214 Query: 181 GKENMLKTSVSRFKMHQLLKLEYNEISEESEYDPLDLFSGSKESVLEAIKALYSTPQNNF 240 GKEN+LKTSVSRFKMHQLLKLEY EISEESEYDPLDLFSGSKE VLEAIKALYSTPQNNF Sbjct: 215 GKENILKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNF 274 Query: 241 RVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGV 300 RVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGV Sbjct: 275 RVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGV 334 Query: 301 LDRLLEIQKLDKLDIEGAIHSYYDLINQPCPICKEGKPLEAELSLHALPLDESLKIVKEY 360 LDRLLEIQKLDKLDIEGAIH YYD+INQPCPICKEG+PLEAELSLHALPLDESLKIVKEY Sbjct: 335 LDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICKEGRPLEAELSLHALPLDESLKIVKEY 394 Query: 361 LIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDYKVHFIDLSLKPLKRMESYY 420 LIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDYKVHFIDLSLKPLKRMESYY Sbjct: 395 LIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDYKVHFIDLSLKPLKRMESYY 454 Query: 421 KLDKKIISFYNRKQKAENTAEQIGNSKPSHS 451 KLDKKIISFYNRKQKAENTAEQIGNSKPSHS Sbjct: 455 KLDKKIISFYNRKQKAENTAEQIGNSKPSHS 485 >5MWL-A nrPDB Length = 471 Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 36/246 (14%) Query: 9 DASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNANGVVSVLTSDE--Q 66 D ++W Y GEG +LV+A+A V+R K N K TS+E Q Sbjct: 10 DENEWSYHGEGNKSLVVAHAQRC-----VVLRFLKFPPNKKK-----------TSEEILQ 53 Query: 67 HLWRENNELISSPNKEVLEQRYVKNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQR 126 HL + +++ + KNV+ LG +V G V + EF++ + K+ +R Sbjct: 54 HL------------QNIVD--FGKNVMKDFLGENYVHCGEVVQLPLEFVKQLCLKIQCER 99 Query: 127 PLWRVNAANVDTSHDSALIL-NDHSLFSQGISSGGDCISVEIKPKCGFLPTSRFIGKENM 185 P R + ++DT A+ L N L + + + VEIKPKCGF+P S + E Sbjct: 100 PESRCDK-DLDTFSGYAMCLPNLTRLQTFHFAEHRPILCVEIKPKCGFIPFSNDVTHE-- 156 Query: 186 LKTSVSRFKMHQLLKLEYNEISEESEYDPLDLFSGSKESVLEAIKALYSTPQNNFRVFLN 245 +K V R+ MHQ LK+ + + S+Y PLDL+SG+K+ + A+++L QNN R+F N Sbjct: 157 MKHKVCRYCMHQHLKVATGKWKKISKYCPLDLYSGNKQRMHFALRSLLQETQNNLRIFKN 216 Query: 246 GSLILG 251 G LI G Sbjct: 217 GELIYG 222 Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 28/159 (17%) Query: 300 VLDRLLEIQKLDKLDIEGAIHSYYDLINQPCPICKEGKPLEAELSLHALPLDE------- 352 +L + L++Q LD+LDIEG ++ Y + Q E P E + P DE Sbjct: 321 LLYKTLQVQMLDQLDIEG-LYPLYKRVEQYL----EEFPEERKTLQIDGPYDEVFYQKLL 375 Query: 353 ------------SLKIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQT-F 399 +L V++Y +A TAKDCSIMI+ + S D + P++++ Sbjct: 376 DLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIAL---SPCLQGTSSDQRPVIPSSRSRL 432 Query: 400 DYKVHFIDLSLKPLKRMESYYKLDKKIISFYNRKQKAEN 438 + V +DL LKP + + YKLD KI+++Y++ A++ Sbjct: 433 AFSVSVLDLDLKPYESIPHQYKLDSKIVNYYSKTVHAKD 471 >5XU6-A nrPDB Length = 417 Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 114/454 (25%), Positives = 192/454 (42%), Gaps = 101/454 (22%) Query: 11 SDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNANGVVSVLTSDEQHLWR 70 SDW Y EGGA++V +Y G S + + +R++K +++ A +D WR Sbjct: 24 SDWAYIAEGGAHIVFSYQGQSKTYATRALRVRKPSATTESLAAAAA------NDVSGQWR 77 Query: 71 ENNELISSPNKEVLEQRYVKNVIIPLLGPKHVDAGVR-VSVSKEFLECVDKKVTKQRPLW 129 N I+P L P+ + R V++ + + + + V RP Sbjct: 78 RN--------------------ILPKLVPRQLLTTSREVTLEEGWYKELLAMVDVVRPAQ 117 Query: 130 RVNAANVDTSHD-SALILNDHSLFSQGISSGGDCISVEIKPKCGFLPTSRFIGKEN--ML 186 R +A ++ D ++L D L S G +++EIKPK GFLP + + + Sbjct: 118 RKSAIDLAAKGDRRGVLLED--LTSNVDDDGAITVAIEIKPKWGFLPCAGHLQPPESVSI 175 Query: 187 KTSVSRFKMHQLLKLEYNEISEESEYDPLDLFSGSKESVLEAIKALYSTPQ------NNF 240 K+ VSRF++HQ + +++ YDPLDLFSG K + A+ L++ + NN+ Sbjct: 176 KSHVSRFRLHQ----HFRGRADDPPYDPLDLFSGDKMRMRTALDGLWTMWEISRGKSNNW 231 Query: 241 RVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGV 300 +VF+ GS E SP +D +G + QL A+ S Sbjct: 232 KVFI-------GSKE----ISP------DDLQRGLLPMGGDDLVTNITQLTLSALQTSSA 274 Query: 301 LDRLLEIQK-LDKLDIEGAIHSYYDLINQPCPICKEGKPLEAELSLHALPLDESLKI--- 356 L L +Q+ LD +DI ++ + + + PI L AE+S A+ L+ + I Sbjct: 275 LPLLKNLQQNLDPIDIS-SLAALFQAEHPNSPIFDPD--LIAEVS--AVELNSFVDIYIS 329 Query: 357 ----------------VKEYLIAATAKDCSIMI----SFQSRNAWDSEPSGDYVSLKPTN 396 + Y ++A KDCS+ + AW G+ V + Sbjct: 330 DPQAGQRMDSWSLRERIIAYALSAIFKDCSLFVRGVLKHAEDGAWRLVSGGESVKV---- 385 Query: 397 QTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFY 430 IDL LKP+K ++ + + D+K+ + Sbjct: 386 ---------IDLDLKPVKNIQKWAETDEKVWKHW 410 >2RGN-B nrPDB Length = 354 Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 396 NQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFYNR 432 Q +++ DL +KP++R+ Y L K + +YNR Sbjct: 127 RQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNR 163 >1Z83-A nrPDB Length = 196 Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Query: 414 KRMESYYKLDKKIISFYN-----RKQKAENTAEQIGNSKPSH 450 KR+E+YYK + +I+FY RK AE + + + + +H Sbjct: 149 KRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTH 190 >3ADK-A nrPDB Length = 195 Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Query: 414 KRMESYYKLDKKIISFYN-----RKQKAENTAEQIGNSKPSH 450 KR+E+YYK + +I+FY RK AE + + + + +H Sbjct: 149 KRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTH 190 >3SDO-A nrPDB Length = 453 Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 41/156 (26%) Query: 210 SEYDPLDLFSG-----SKESVLEAIKALYSTPQNNFRVFLNGSLILG------------- 251 + ++P+ L S SK ++ + + YS P N R F + LI G Sbjct: 75 NRFEPISLLSALAVLTSKIGLVGTMSSSYSEPYNVARQFASLDLISGGRAGWNVVTSSIE 134 Query: 252 GSGESTGRTSPE------IGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLL 305 G+G++ GR P+ I D ++G S D LV D G R Sbjct: 135 GTGKNYGRPHPDHAQRYAIAAEHLDVVQGLWDSWDDD------ALVRDRATG-----RFF 183 Query: 306 EIQKLDKLDIEGAIHSYYDLINQPCPICK--EGKPL 339 + KL +LD G S + P I + +G+P+ Sbjct: 184 DPDKLHRLDHRGRFFS----VEGPLNIRRSPQGQPV 215 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3UDT-A nrPDB 732 0.0 5MWL-A nrPDB 426 e-120 5XU6-A nrPDB 423 e-119 Sequences not found previously or not previously below threshold: 5YFP-B nrPDB 31 1.5 5NTU-A nrPDB 30 1.7 2RGN-B nrPDB 30 2.3 4V3N-A nrPDB 29 4.9 1LB1-A nrPDB 28 8.6 CONVERGED! >3UDT-A nrPDB Length = 493 Score = 732 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 442/451 (98%), Positives = 448/451 (99%) Query: 1 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNANGVVSV 60 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKN+NGVVSV Sbjct: 35 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVVSV 94 Query: 61 LTSDEQHLWRENNELISSPNKEVLEQRYVKNVIIPLLGPKHVDAGVRVSVSKEFLECVDK 120 LTSDEQHLWRENNELISSPNKEVLEQRYV+NVIIPLLGPKHVDAGVRVSVSKEFLECVDK Sbjct: 95 LTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDK 154 Query: 121 KVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGISSGGDCISVEIKPKCGFLPTSRFI 180 KVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGI+SGGDCISVEIKPKCGFLPTSRFI Sbjct: 155 KVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFI 214 Query: 181 GKENMLKTSVSRFKMHQLLKLEYNEISEESEYDPLDLFSGSKESVLEAIKALYSTPQNNF 240 GKEN+LKTSVSRFKMHQLLKLEY EISEESEYDPLDLFSGSKE VLEAIKALYSTPQNNF Sbjct: 215 GKENILKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNF 274 Query: 241 RVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGV 300 RVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGV Sbjct: 275 RVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGV 334 Query: 301 LDRLLEIQKLDKLDIEGAIHSYYDLINQPCPICKEGKPLEAELSLHALPLDESLKIVKEY 360 LDRLLEIQKLDKLDIEGAIH YYD+INQPCPICKEG+PLEAELSLHALPLDESLKIVKEY Sbjct: 335 LDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICKEGRPLEAELSLHALPLDESLKIVKEY 394 Query: 361 LIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDYKVHFIDLSLKPLKRMESYY 420 LIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDYKVHFIDLSLKPLKRMESYY Sbjct: 395 LIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDYKVHFIDLSLKPLKRMESYY 454 Query: 421 KLDKKIISFYNRKQKAENTAEQIGNSKPSHS 451 KLDKKIISFYNRKQKAENTAEQIGNSKPSHS Sbjct: 455 KLDKKIISFYNRKQKAENTAEQIGNSKPSHS 485 >5MWL-A nrPDB Length = 471 Score = 426 bits (1096), Expect = e-120, Method: Composition-based stats. Identities = 139/503 (27%), Positives = 221/503 (43%), Gaps = 114/503 (22%) Query: 9 DASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNANGVVSVLTSDE--Q 66 D ++W Y GEG +LV+A+A V+R K N K TS+E Q Sbjct: 10 DENEWSYHGEGNKSLVVAHAQRC-----VVLRFLKFPPNKKK-----------TSEEILQ 53 Query: 67 HLWRENNELISSPNKEVLEQRYVKNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQR 126 HL + +++ + KNV+ LG +V G V + EF++ + K+ +R Sbjct: 54 HL------------QNIVD--FGKNVMKDFLGENYVHCGEVVQLPLEFVKQLCLKIQCER 99 Query: 127 PLWRVNAANVDTSHDSALIL-NDHSLFSQGISSGGDCISVEIKPKCGFLPTSRFIGKENM 185 P R + ++DT A+ L N L + + + VEIKPKCGF+P S + E Sbjct: 100 PESRCDK-DLDTFSGYAMCLPNLTRLQTFHFAEHRPILCVEIKPKCGFIPFSNDVTHE-- 156 Query: 186 LKTSVSRFKMHQLLKLEYNEISEESEYDPLDLFSGSKESVLEAIKALYSTPQNNFRVFLN 245 +K V R+ MHQ LK+ + + S+Y PLDL+SG+K+ + A+++L QNN R+F N Sbjct: 157 MKHKVCRYCMHQHLKVATGKWKKISKYCPLDLYSGNKQRMHFALRSLLQETQNNLRIFKN 216 Query: 246 GSLILG----------------------------GSG---------ESTGRTSPEIGYAF 268 G LI G SG E + + + Sbjct: 217 GELIYGCGDARSPVADLKELAHHLKPFFFPSNGLASGPHCTKAVIRELVHVITRVLLSSS 276 Query: 269 EDALKGFIQSEDGHRTECFLQLVSDAVYGSG-------------VLDRLLEIQKLDKLDI 315 E A G ++ C S +++ G +L + L++Q LD+LDI Sbjct: 277 EKARAGALRLGLQGPRVCEASPFSRSLHNQGKNTSEHSGLPKGCLLYKTLQVQMLDQLDI 336 Query: 316 EGAIHSYYDLINQPCPICKEGKPLEAELSLHALPLDE-------------------SLKI 356 EG ++ Y + Q E P E + P DE +L Sbjct: 337 EG-LYPLYKRVEQYL----EEFPEERKTLQIDGPYDEVFYQKLLDLSTEDDGTVAFALTK 391 Query: 357 VKEYLIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQT-FDYKVHFIDLSLKPLKR 415 V++Y +A TAKDCSIMI+ + S D + P++++ + V +DL LKP + Sbjct: 392 VQQYRVAMTAKDCSIMIAL---SPCLQGTSSDQRPVIPSSRSRLAFSVSVLDLDLKPYES 448 Query: 416 MESYYKLDKKIISFYNRKQKAEN 438 + YKLD KI+++Y++ A++ Sbjct: 449 IPHQYKLDSKIVNYYSKTVHAKD 471 >5XU6-A nrPDB Length = 417 Score = 423 bits (1088), Expect = e-119, Method: Composition-based stats. Identities = 114/458 (24%), Positives = 194/458 (42%), Gaps = 101/458 (22%) Query: 11 SDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNANGVVSVLTSDEQHLWR 70 SDW Y EGGA++V +Y G S + + +R++K +++ A +D WR Sbjct: 24 SDWAYIAEGGAHIVFSYQGQSKTYATRALRVRKPSATTESLAAAAA------NDVSGQWR 77 Query: 71 ENNELISSPNKEVLEQRYVKNVIIPLLGPKHVDAGVR-VSVSKEFLECVDKKVTKQRPLW 129 N I+P L P+ + R V++ + + + + V RP Sbjct: 78 RN--------------------ILPKLVPRQLLTTSREVTLEEGWYKELLAMVDVVRPAQ 117 Query: 130 RVNAANVDTSHD-SALILNDHSLFSQGISSGGDCISVEIKPKCGFLPTSRFIGKEN--ML 186 R +A ++ D ++L D L S G +++EIKPK GFLP + + + Sbjct: 118 RKSAIDLAAKGDRRGVLLED--LTSNVDDDGAITVAIEIKPKWGFLPCAGHLQPPESVSI 175 Query: 187 KTSVSRFKMHQLLKLEYNEISEESEYDPLDLFSGSKESVLEAIKALYSTPQ------NNF 240 K+ VSRF++HQ + +++ YDPLDLFSG K + A+ L++ + NN+ Sbjct: 176 KSHVSRFRLHQ----HFRGRADDPPYDPLDLFSGDKMRMRTALDGLWTMWEISRGKSNNW 231 Query: 241 RVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGV 300 +VF+ GS E SP +D +G + QL A+ S Sbjct: 232 KVFI-------GSKE----ISP------DDLQRGLLPMGGDDLVTNITQLTLSALQTSSA 274 Query: 301 LDRLLEIQK-LDKLDIEGAIHSYYDLINQPCPICKEGKPLEAELSLHALPLDESLKI--- 356 L L +Q+ LD +DI ++ + + + PI L AE+S A+ L+ + I Sbjct: 275 LPLLKNLQQNLDPIDIS-SLAALFQAEHPNSPIFDPD--LIAEVS--AVELNSFVDIYIS 329 Query: 357 ----------------VKEYLIAATAKDCSIMI----SFQSRNAWDSEPSGDYVSLKPTN 396 + Y ++A KDCS+ + AW G+ V + Sbjct: 330 DPQAGQRMDSWSLRERIIAYALSAIFKDCSLFVRGVLKHAEDGAWRLVSGGESVKV---- 385 Query: 397 QTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFYNRKQ 434 IDL LKP+K ++ + + D+K+ + + + Sbjct: 386 ---------IDLDLKPVKNIQKWAETDEKVWKHWLKTK 414 >5YFP-B nrPDB Length = 971 Score = 30.6 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%) Query: 344 SLHALPLDESLKIVKEY-LIAATAKDCSIMISFQSRNAWDSEPSGDYVSL--KPTNQTFD 400 S + L LKI + + +I+ T KD + S N ++ Y++L +P++Q Sbjct: 397 SQGCVELSYYLKINQLFQIISDTGKDSEGLKSTVEPNKVNTISGTSYLNLNCQPSSQGLT 456 Query: 401 YKVHFIDLSLKPLKRMESYYKLDKKIISFYNRKQKAENTAEQ 442 I++ L LK + +K+ + I F+ +K + Q Sbjct: 457 DSPTIIEMWLLILKYINDLWKICDQFIEFWEHIEKFLDGTYQ 498 >5NTU-A nrPDB Length = 335 Score = 30.2 bits (66), Expect = 1.7, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Query: 109 SVSKEFLECVDKKVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGI----SSGGDCIS 164 ++SK+ + + K R L D S D +L +D+ ++ I + + Sbjct: 31 NISKDVIRQLLPKAPPLRELIDQYDVQRDDSSDGSLEDDDYHATTETIITMPTESDFLMQ 90 Query: 165 VEIKPKCGFLPTSRFIGKENMLKTSV 190 V+ KPKC F S I ++K + Sbjct: 91 VDGKPKCCFFKFSSKIQYNKVVKAQL 116 >2RGN-B nrPDB Length = 354 Score = 29.8 bits (65), Expect = 2.3, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Query: 397 QTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFYNRKQKAENTAE 441 Q +++ DL +KP++R+ Y L K + +YNR +TA+ Sbjct: 128 QQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRA--GMDTAD 170 >4V3N-A nrPDB Length = 135 Score = 28.7 bits (62), Expect = 4.9, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 6/82 (7%) Query: 167 IKPKCGFLPTSRFIGKENML-KTSVSRFKMHQLLKLEYNEISEESE-----YDPLDLFSG 220 +KP G L E K + K + L++ S+ +E +D +D G Sbjct: 23 LKPSWGKLHADGDKDTEVSASKYEGTVIKPDEKLQINACGRSDAAEGTTGTFDLVDPADG 82 Query: 221 SKESVLEAIKALYSTPQNNFRV 242 K+ + + N + V Sbjct: 83 DKQVRHFYWDCPWGSKTNTWTV 104 >1LB1-A nrPDB Length = 353 Score = 27.9 bits (60), Expect = 8.6, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 376 QSRNAWDSEPSGDYVSLKPTNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFYNRKQK 435 +S + W D + + D+K+ LKP++R+ Y L K+++ + + Sbjct: 113 RSESLWRQ--CSDCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEG 170 Query: 436 AENTAEQIGN 445 AE+ E + + Sbjct: 171 AEDLQEALSS 180 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.119 0.299 Lambda K H 0.267 0.0360 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,579,660 Number of Sequences: 36641 Number of extensions: 524001 Number of successful extensions: 1105 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 1065 Number of HSP's gapped (non-prelim): 22 length of query: 451 length of database: 10,336,785 effective HSP length: 100 effective length of query: 351 effective length of database: 6,672,685 effective search space: 2342112435 effective search space used: 2342112435 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 60 (27.9 bits)