BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q939U1 (287 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1H33-A nrPDB 545 e-156 2C1D-A nrPDB 287 3e-78 3OA8-A nrPDB 79 2e-15 4WQD-A nrPDB 39 0.004 5LO9-A nrPDB 36 0.017 4MFV-A nrPDB 33 0.16 5DJQ-C nrPDB 33 0.17 6O85-G nrPDB 32 0.36 1TXG-A nrPDB 29 1.8 >1H33-A nrPDB Length = 261 Score = 545 bits (1405), Expect = e-156, Method: Compositional matrix adjust. Identities = 261/261 (100%), Positives = 261/261 (100%) Query: 27 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEE 86 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEE Sbjct: 1 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEE 60 Query: 87 ARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMG 146 ARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMG Sbjct: 61 ARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMG 120 Query: 147 APEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASC 206 APEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASC Sbjct: 121 APEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASC 180 Query: 207 HEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVA 266 HEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVA Sbjct: 181 HEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVA 240 Query: 267 LELYVASRGNGLSVEGPSVRN 287 LELYVASRGNGLSVEGPSVRN Sbjct: 241 LELYVASRGNGLSVEGPSVRN 261 >2C1D-A nrPDB Length = 264 Score = 287 bits (735), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 145/262 (55%), Positives = 178/262 (67%), Gaps = 4/262 (1%) Query: 29 DDPLVI---NGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVE 85 +D LVI +G +EIVT+ PA LAD FD I SGW FR D T+ LE DDF+N MVFV+ Sbjct: 4 EDGLVIETDSGPVEIVTKTAPPAFLADTFDTIYSGWHFRDDSTRDLERDDFDNPAMVFVD 63 Query: 86 EARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRM 145 W+ G G++CA CH + M GLRAV P+ E GK+ +E +NAC T RM Sbjct: 64 RGLDKWNAAMGVNGESCASCHQG-PESMAGLRAVMPRVDEHTGKLMIMEDYVNACVTERM 122 Query: 146 GAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCAS 205 G +W +M M++LI+ SRGM V+V IDGPA WE G+EIYYTRYGQL++SCA+ Sbjct: 123 GLEKWGVTSDNMKDMLSLISLQSRGMAVNVKIDGPAAPYWEHGKEIYYTRYGQLEMSCAN 182 Query: 206 CHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFV 265 CHE + IRADHLSQGQINGFP+YRLK++ + RF GC+RDTR F GS +F Sbjct: 183 CHEDNAGNMIRADHLSQGQINGFPTYRLKDSGMVTAQHRFVGCVRDTRAETFKAGSDDFK 242 Query: 266 ALELYVASRGNGLSVEGPSVRN 287 ALELYVASRGNGLSVEG SVR+ Sbjct: 243 ALELYVASRGNGLSVEGVSVRH 264 >3OA8-A nrPDB Length = 275 Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 21/233 (9%) Query: 74 DDFENSGMVFVEEARAVWDRPEGTEGKACADCH-GAVDDGMYGLRAVYPKYVESAGKVRT 132 D N G + V+ +W P GT + C G + G A P+Y GKV Sbjct: 43 DPMANPGFLNVDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFADTGKVMD 102 Query: 133 VEQMINACRTSRMGAPEWDYI-----GP----DMTAMVALIASVSRGMPVSVAIDGPAQS 183 +EQ + C + G + GP DM +VA IA+ S G+ + VA+ P + Sbjct: 103 LEQRLLWCMETIQGRDTKPLVAKPFSGPGRTSDMEDLVAFIANKSDGVKIKVALATPQEK 162 Query: 184 -TWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQING---------FPSYRL 233 + G +++ R D SC++CH IR L Q + G +P+YR+ Sbjct: 163 EMYAIGEALFFRRSSINDFSCSTCHGAA-GKRIRLQALPQLDVPGKDAQLTMATWPTYRV 221 Query: 234 KNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVR 286 + L + R C R R S AL LY+ + G ++ PS++ Sbjct: 222 SQSALRTMQHRMWDCYRQMRMPAPDYASEAVTALTLYLTKQAEGGELKVPSIK 274 >4WQD-A nrPDB Length = 252 Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 24/127 (18%) Query: 98 EGKACADCHGAVDD---------GMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAP 148 G AC CH D G+ +P+Y G++ T+EQ I C + Sbjct: 45 NGLACRHCHPGRDGEVGTEANAAPFVGVVGRFPQYSARHGRLITLEQRIGDCFERSLNGR 104 Query: 149 EWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGRE--------IYYTRYGQLD 200 P + M+A ++ +S+G+PV + G T RE +Y R Sbjct: 105 ALALDHPALIDMLAYMSWLSQGVPVGAVVAGHGIPTLTLEREPDGVHGEALYQAR----- 159 Query: 201 LSCASCH 207 C +CH Sbjct: 160 --CLACH 164 >5LO9-A nrPDB Length = 526 Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 200 DLSCASCHEQYFDHYIRADHLSQ-GQINGFPSYRLKNARLNAVHDRFRGCIR 250 D +CA CH D+ RAD +P+YR KN R++ + +R +GC R Sbjct: 284 DQTCAGCH---LDNGRRADASPMWAAWVAYPAYRGKNQRVDTMAERIQGCFR 332 >4MFV-A nrPDB Length = 534 Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 7/40 (17%) Query: 94 PEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTV 133 PEGT+ +CH VD + GLR ++P +++S K++ V Sbjct: 335 PEGTD-----NCHKFVD--ILGLRTIFPLFMKSPRKIKKV 367 >5DJQ-C nrPDB Length = 311 Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 18/95 (18%) Query: 83 FVEEARAVWDRPEGTEG----------KACADCHGAVDDGMYGLRAVYPKYVESAGKVR- 131 FV + A PEGT+ + CA CHG +GM L A PK +AG + Sbjct: 204 FVRKDLAGLPLPEGTDADLSAGKNVYAQTCAVCHGQGGEGMAALGA--PKLNSAAGWIYG 261 Query: 132 ----TVEQMINACRTSRMGAPEWDYIGPDMTAMVA 162 ++Q I R +M A + Y+G D ++A Sbjct: 262 SSLGQLQQTIRHGRNGQMPAQQ-QYLGDDKVHLLA 295 >6O85-G nrPDB Length = 305 Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Query: 70 ALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGK 129 +LE D+ + +E R + K CH + DG L Y + V Sbjct: 80 SLEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVV----- 134 Query: 130 VRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKG 188 +R +E + A + + E PD++ A +PV+V +D EK Sbjct: 135 LRVLEAAVAAKKRFSVYVTESQ---PDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKA 190 >1TXG-A nrPDB Length = 335 Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 25/42 (59%) Query: 162 ALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSC 203 A+ V++ MP +V P++S+ K +EI+ T Y ++++ Sbjct: 139 AIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1H33-A nrPDB 447 e-126 2C1D-A nrPDB 433 e-122 3OA8-A nrPDB 312 1e-85 Sequences not found previously or not previously below threshold: 4WQD-A nrPDB 57 7e-09 5LO9-A nrPDB 37 0.012 4NWK-A nrPDB 32 0.36 1QDB-A nrPDB 31 0.64 6C2N-A nrPDB 30 1.2 5DJQ-C nrPDB 30 1.3 1NJ2-A nrPDB 29 2.0 2F9V-A nrPDB 29 2.1 1YIO-A nrPDB 29 2.3 6HEG-A nrPDB 29 2.7 4B6E-A nrPDB 29 2.9 2IW3-A nrPDB 29 3.1 4U01-A nrPDB 28 4.2 4K8B-A nrPDB 28 4.4 6FE6-A nrPDB 28 5.0 3B4W-A nrPDB 27 8.6 >1H33-A nrPDB Length = 261 Score = 447 bits (1150), Expect = e-126, Method: Composition-based stats. Identities = 261/261 (100%), Positives = 261/261 (100%) Query: 27 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEE 86 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEE Sbjct: 1 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEE 60 Query: 87 ARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMG 146 ARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMG Sbjct: 61 ARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMG 120 Query: 147 APEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASC 206 APEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASC Sbjct: 121 APEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASC 180 Query: 207 HEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVA 266 HEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVA Sbjct: 181 HEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVA 240 Query: 267 LELYVASRGNGLSVEGPSVRN 287 LELYVASRGNGLSVEGPSVRN Sbjct: 241 LELYVASRGNGLSVEGPSVRN 261 >2C1D-A nrPDB Length = 264 Score = 433 bits (1114), Expect = e-122, Method: Composition-based stats. Identities = 145/262 (55%), Positives = 178/262 (67%), Gaps = 4/262 (1%) Query: 29 DDPLVI---NGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVE 85 +D LVI +G +EIVT+ PA LAD FD I SGW FR D T+ LE DDF+N MVFV+ Sbjct: 4 EDGLVIETDSGPVEIVTKTAPPAFLADTFDTIYSGWHFRDDSTRDLERDDFDNPAMVFVD 63 Query: 86 EARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRM 145 W+ G G++CA CH + M GLRAV P+ E GK+ +E +NAC T RM Sbjct: 64 RGLDKWNAAMGVNGESCASCHQ-GPESMAGLRAVMPRVDEHTGKLMIMEDYVNACVTERM 122 Query: 146 GAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCAS 205 G +W +M M++LI+ SRGM V+V IDGPA WE G+EIYYTRYGQL++SCA+ Sbjct: 123 GLEKWGVTSDNMKDMLSLISLQSRGMAVNVKIDGPAAPYWEHGKEIYYTRYGQLEMSCAN 182 Query: 206 CHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFV 265 CHE + IRADHLSQGQINGFP+YRLK++ + RF GC+RDTR F GS +F Sbjct: 183 CHEDNAGNMIRADHLSQGQINGFPTYRLKDSGMVTAQHRFVGCVRDTRAETFKAGSDDFK 242 Query: 266 ALELYVASRGNGLSVEGPSVRN 287 ALELYVASRGNGLSVEG SVR+ Sbjct: 243 ALELYVASRGNGLSVEGVSVRH 264 >3OA8-A nrPDB Length = 275 Score = 312 bits (800), Expect = 1e-85, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 27/248 (10%) Query: 65 TDDTQALEM------DDFENSGMVFVEEARAVWDRPEGTEGKACADCH-GAVDDGMYGLR 117 + + +E D N G + V+ +W P GT + C G + G Sbjct: 28 DESEKEIERYRQMIEDPMANPGFLNVDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAY 87 Query: 118 AVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYI-----GP----DMTAMVALIASVS 168 A P+Y GKV +EQ + C + G + GP DM +VA IA+ S Sbjct: 88 AHLPRYFADTGKVMDLEQRLLWCMETIQGRDTKPLVAKPFSGPGRTSDMEDLVAFIANKS 147 Query: 169 RGMPVSVAIDGPAQS-TWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQING 227 G+ + VA+ P + + G +++ R D SC++CH IR L Q + G Sbjct: 148 DGVKIKVALATPQEKEMYAIGEALFFRRSSINDFSCSTCHGAA-GKRIRLQALPQLDVPG 206 Query: 228 ---------FPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVALELYVASRGNGL 278 +P+YR+ + L + R C R R S AL LY+ + G Sbjct: 207 KDAQLTMATWPTYRVSQSALRTMQHRMWDCYRQMRMPAPDYASEAVTALTLYLTKQAEGG 266 Query: 279 SVEGPSVR 286 ++ PS++ Sbjct: 267 ELKVPSIK 274 >4WQD-A nrPDB Length = 252 Score = 57.4 bits (137), Expect = 7e-09, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 24/138 (17%) Query: 98 EGKACADCHGAVDDGM---------YGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAP 148 G AC CH D + G+ +P+Y G++ T+EQ I C + Sbjct: 45 NGLACRHCHPGRDGEVGTEANAAPFVGVVGRFPQYSARHGRLITLEQRIGDCFERSLNGR 104 Query: 149 EWDYIGPDMTAMVALIASVSRGMPVSVAIDG--------PAQSTWEKGREIYYTRYGQLD 200 P + M+A ++ +S+G+PV + G + G +Y R Sbjct: 105 ALALDHPALIDMLAYMSWLSQGVPVGAVVAGHGIPTLTLEREPDGVHGEALYQAR----- 159 Query: 201 LSCASCHEQYFDHYIRAD 218 C +CH + AD Sbjct: 160 --CLACHGADGSGTLDAD 175 Score = 34.3 bits (77), Expect = 0.060, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 199 LDLSCASCHEQYFDHY-IRADHLSQGQING-FPSYRLKNARLNAVHDRFRGCI-RDTRGV 255 L+C CH A+ + G FP Y ++ RL + R C R G Sbjct: 45 NGLACRHCHPGRDGEVGTEANAAPFVGVVGRFPQYSARHGRLITLEQRIGDCFERSLNGR 104 Query: 256 PFAVGSPEFVALELYVASRGNGLSVEGPSVRN 287 A+ P + + Y++ G+ V + Sbjct: 105 ALALDHPALIDMLAYMSWLSQGVPVGAVVAGH 136 >5LO9-A nrPDB Length = 526 Score = 36.6 bits (83), Expect = 0.012, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Query: 199 LDLSCASCHEQYFDHYIRADHLSQGQI-NGFPSYRLKNARLNAVHDRFRGCIR 250 D +CA CH D+ RAD +P+YR KN R++ + +R +GC R Sbjct: 283 NDQTCAGCH---LDNGRRADASPMWAAWVAYPAYRGKNQRVDTMAERIQGCFR 332 >4NWK-A nrPDB Length = 219 Score = 31.6 bits (70), Expect = 0.36, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%) Query: 34 INGEIEIVTRAPTPAHLADRFD----EIRSGWTFRTDDTQALEMDDFENSGMVFVEEARA 89 + GE++IV+ T LA + + G RT + + V++ Sbjct: 44 VEGEVQIVS-TATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQM----YTNVDKDLV 98 Query: 90 VWDRPEGTEGKACADC 105 W P+G+ C Sbjct: 99 GWQAPQGSRSLTPCTC 114 >1QDB-A nrPDB Length = 473 Score = 30.8 bits (68), Expect = 0.64, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 16/89 (17%) Query: 54 FDEI-RSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDG 112 +DEI S WT T L+ ++ G F + G +G +CADCH + Sbjct: 219 YDEINFSDWTHNISKTPMLKA---QHPGFEFWKSGI------HGQKGVSCADCH--MPYT 267 Query: 113 MYGLRAVYPKYVESAGKVRTVEQMINACR 141 G KY + K ++ M +C Sbjct: 268 QEGSV----KYSDHQVKENPLDSMDQSCM 292 >6C2N-A nrPDB Length = 203 Score = 30.1 bits (66), Expect = 1.2, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%) Query: 34 INGEIEIVTRAPTPAHLADRFD----EIRSGWTFRTDDTQALEMDDFENSGMVFVEEARA 89 + GE++IV+ T LA + + G RT + + V++ Sbjct: 50 VEGEVQIVS-TATQTFLATSINGVLWTVHHGAGTRTIASPKGPVTQM----YTNVDKDLV 104 Query: 90 VWDRPEGTEGKACADC 105 W P+G+ C Sbjct: 105 GWQAPQGSRSLTPCTC 120 >5DJQ-C nrPDB Length = 311 Score = 29.7 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 92 DRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAG-----KVRTVEQMINACRTSRMG 146 + + CA CHG +GM L A PK +AG + ++Q I R +M Sbjct: 223 SAGKNVYAQTCAVCHGQGGEGMAALGA--PKLNSAAGWIYGSSLGQLQQTIRHGRNGQMP 280 Query: 147 APEWDYIGPDMTAMVA 162 A + Y+G D ++A Sbjct: 281 AQQQ-YLGDDKVHLLA 295 >1NJ2-A nrPDB Length = 501 Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 28/177 (15%) Query: 40 IVTRAPTPAHLADRFDEIRSGWTFRT--DDTQALEMDDFENSGMVFVEEARAVWDRPEGT 97 ++TR P D+F F T D + L++ N G F ++ PEG Sbjct: 222 LITRRPP----WDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGD 277 Query: 98 EGKACADCHGAVDDGMYGLRAVY---------PKYVESAGKVRTV------EQMINACRT 142 C+G D + + A++ P + + E+++ ACR Sbjct: 278 HEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRE 337 Query: 143 SRMGAPEWD----YIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTR 195 R D+ A RG+P+ V I GP EKG + R Sbjct: 338 LRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEI-GPRD--LEKGAAVISRR 391 >2F9V-A nrPDB Length = 201 Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%) Query: 34 INGEIEIVTRAPTPAHLADRFD----EIRSGWTFRTDDTQALEMDDFENSGMVFVEEARA 89 + GE++IV+ T LA + + G RT + + V++ Sbjct: 41 VEGEVQIVS-TATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQM----YTNVDQDLV 95 Query: 90 VWDRPEGTEGKACADC 105 W P+G+ C Sbjct: 96 GWPAPQGSRSLTPCTC 111 >1YIO-A nrPDB Length = 208 Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 7/127 (5%) Query: 29 DDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEAR 88 DD + + + + R+ + FD + R + + D GM +E Sbjct: 11 DDDMSVREGLRNLLRSA--GFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQE 68 Query: 89 AVWDRPEGTEGKACADCHGAVDDGM----YGLRAVYPKYVESAGKVRTVEQMINACRTSR 144 + +G HG + + G PK E + +EQ + R Sbjct: 69 QLTAISDGIP-IVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERR 127 Query: 145 MGAPEWD 151 D Sbjct: 128 QARETQD 134 >6HEG-A nrPDB Length = 809 Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 8/71 (11%) Query: 85 EEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAV-------YPKYVESAGKVRTVEQMI 137 ++ +A+ P+G A + G+R V ++ G R + Q + Sbjct: 253 DQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRV 312 Query: 138 N-ACRTSRMGA 147 + A T R G Sbjct: 313 SQASMTQRAGR 323 >4B6E-A nrPDB Length = 683 Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 34 INGEIEIVTRAPTPAHLADRFDEI-RSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWD 92 + GE+++V+ T + LA + + + + T A V++ W Sbjct: 64 VEGEVQVVS-TATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQ-MYTNVDQDLVGWQ 121 Query: 93 RPEGTEGKACADC 105 P G C Sbjct: 122 APPGARSLTPCTC 134 >2IW3-A nrPDB Length = 986 Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 9/68 (13%) Query: 194 TRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTR 253 RYG C ++ GQ++GFP+ + R V G DT Sbjct: 462 RRYGI-------CGPNGCGKSTLMRAIANGQVDGFPTQ--EECRTVYVEHDIDGTHSDTS 512 Query: 254 GVPFAVGS 261 + F S Sbjct: 513 VLDFVFES 520 >4U01-A nrPDB Length = 203 Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 34 INGEIEIVTRAPTPAHLADRFDEI-RSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWD 92 + GE+++V+ T + LA + + + + T A V++ W Sbjct: 30 VEGEVQVVS-TATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQ-MYTNVDQDLVGWQ 87 Query: 93 RPEGTEGKACADC 105 P G C Sbjct: 88 APPGARSLTPCTC 100 >4K8B-A nrPDB Length = 181 Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 34 INGEIEIVTRAPTPAHLADRFDEI-RSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWD 92 + GE+++V+ T + LA + + + + T A V++ W Sbjct: 29 VEGEVQVVS-TATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQ-MYTNVDQDLVGWQ 86 Query: 93 RPEGTEGKACADC 105 P G C Sbjct: 87 APPGARSLTPCTC 99 >6FE6-A nrPDB Length = 165 Score = 28.1 bits (61), Expect = 5.0, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 34 INGEIEIVTRAPTPAHLADRFDEI-RSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWD 92 + GE+++V+ T + LA + + + + T A V++ W Sbjct: 8 VEGEVQVVS-TATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQ-MYTNVDQDLVGWQ 65 Query: 93 RPEGTEGKACADC 105 P G C Sbjct: 66 APPGARSLTPCTC 78 >3B4W-A nrPDB Length = 495 Score = 27.4 bits (59), Expect = 8.6, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 3/86 (3%) Query: 53 RFDEIRSGWT-FRTDDTQALEMDDFENSGMVFVE--EARAVWDRPEGTEGKACADCHGAV 109 R+DEI + T F T D G + E R +G E A C G Sbjct: 300 RYDEIVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGR 359 Query: 110 DDGMYGLRAVYPKYVESAGKVRTVEQ 135 +G+ + P T+ Q Sbjct: 360 PEGLDNGFFIQPTVFADVDNKMTIAQ 385 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.131 0.368 Lambda K H 0.267 0.0407 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,262,994 Number of Sequences: 36641 Number of extensions: 453771 Number of successful extensions: 1248 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 1216 Number of HSP's gapped (non-prelim): 39 length of query: 287 length of database: 10,336,785 effective HSP length: 96 effective length of query: 191 effective length of database: 6,819,249 effective search space: 1302476559 effective search space used: 1302476559 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 58 (27.0 bits)