BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q93088
         (406 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1LT8-A nrPDB                                                          824   0.0  
1UMY-A nrPDB                                                          797   0.0  
1Q7Q-A nrPDB                                                           70   1e-12
4CCZ-A nrPDB                                                           56   2e-08
5DML-A nrPDB                                                           51   1e-06
1F8S-A nrPDB                                                           31   1.2  
4V6U-AD nrPDB                                                          29   3.7  
2UYY-A nrPDB                                                           28   7.0  

>1LT8-A nrPDB
          Length = 406

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/406 (98%), Positives = 400/406 (98%)

Query: 1   MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
           M PVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1   MAPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 120
           REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAA DIARQVADEGDALVAG
Sbjct: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVADEGDALVAG 120

Query: 121 GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180
           GVSQTPSYLS KSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP
Sbjct: 121 GVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180

Query: 181 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 240
           VAATM IGPEGDLHGVPPGE AVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAA+L
Sbjct: 181 VAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAAQL 240

Query: 241 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
           KAHLMSQPLAYHTPD NKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 360
           GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 360

Query: 361 RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKSQ 406
           RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKSQ
Sbjct: 361 RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKSQ 406


>1UMY-A nrPDB
          Length = 407

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/405 (93%), Positives = 392/405 (96%)

Query: 1   MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
           M P+ GKKAK+GILERLNAGE+VIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1   MAPIAGKKAKRGILERLNAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 120
           REFLRAGSNVMQTFTFYASEDKLENRGNYV EKISGQ+VNEAACDIARQVADEGDALVAG
Sbjct: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 121 GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180
           GVSQTPSYLSCKSETEVKK+F QQLEVFMKKNVDFLIAEYFEHVEEAVWAVE L  SGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKIFHQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKTSGKP 180

Query: 181 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 240
           +AATMCIGPEGDLHGV PGECAVRLVKAGA+I+GVNCHFDP+ SL+T+KLMKEGLEAARL
Sbjct: 181 IAATMCIGPEGDLHGVSPGECAVRLVKAGAAIVGVNCHFDPSTSLQTIKLMKEGLEAARL 240

Query: 241 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
           KA+LMSQPLAYHTPDC KQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 360
           GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPW+RARARKEYW+NLRIASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARKEYWQNLRIASG 360

Query: 361 RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKS 405
           RPYNPSMSKPD WGVTKG AELMQQKEATTEQQL+ LFEKQKFKS
Sbjct: 361 RPYNPSMSKPDAWGVTKGAAELMQQKEATTEQQLRALFEKQKFKS 405


>1Q7Q-A nrPDB
          Length = 566

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 130/301 (43%), Gaps = 32/301 (10%)

Query: 14  LERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQT 73
           + +L +  +++ DG +     K GY        E  ++ P+ V ++HR ++ +GS+V+ T
Sbjct: 7   VSKLLSERVLLLDGAYGTEFMKYGY---DDLPEELNIKAPDVVLKVHRSYIESGSDVILT 63

Query: 74  FTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAGGVSQT---PSYLS 130
            TF A+  KL   G  + +K+    +   A  IAR+ A  G+ LV G +  T   P  L 
Sbjct: 64  NTFGATRMKLRKHG--LEDKL--DPIVRNAVRIARRAA--GEKLVFGDIGPTGELPYPLG 117

Query: 131 CKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPV--AATMCIG 188
                E  + F + +E+ +++ VD +I E F  + E   AV       + V   A M   
Sbjct: 118 STLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMTFD 177

Query: 189 PEG-DLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARLKAHLMSQ 247
            +G  L G  P   A+   +     +G+NC   P   L   + + +  +       L+ +
Sbjct: 178 EKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQYTD-----KFLVVE 232

Query: 248 PLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHI 307
           P A        +  ++  +  + L+P      D   +    Y LGV   GGCCG  P H+
Sbjct: 233 PNA-------GKPIVENGKTVYPLKPH-----DFAVHIDSYYELGVNIFGGCCGTTPEHV 280

Query: 308 R 308
           +
Sbjct: 281 K 281


>4CCZ-A nrPDB
          Length = 644

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 133/306 (43%), Gaps = 48/306 (15%)

Query: 49  AVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIAR 108
           ++  P+ + Q+H+E+L AG+++++T TF ++      + +Y LE ++   +N  +  +AR
Sbjct: 58  SITQPDVIYQIHKEYLLAGADIIETNTFSSTSIA---QADYGLEHLA-YRMNMCSAGVAR 113

Query: 109 QVADEGDA------LVAGGVSQTPSYLSCKSET-----------EVKKVFLQQLEVFMKK 151
           + A+E          VAG +  T   LS                E+ + + +Q +  +  
Sbjct: 114 KAAEEVTLQTGIKRFVAGALGPTNKTLSVSPSVERPDYRNITFDELVEAYQEQAKGLLDG 173

Query: 152 NVDFLIAEYF---EHVEEAVWAVETLIA---SGKPVAAT-MCIGPEGDLHGVPPGECAVR 204
            VD L+ E      + + A++A++ L     + +P+  +   +   G       GE  V 
Sbjct: 174 GVDILLIETIFDTANAKAALFALQNLFEEKYAPRPIFISGTIVDKSGRTLSGQTGEGFVI 233

Query: 205 LVKAGASI-IGVNCHFDPTISLKTVKLMKEGLEAARLKAHLMSQPLAYHTPDCNKQGFID 263
            V  G  + IG+NC          ++++ +        A+++  P A   P+     F D
Sbjct: 234 SVSHGEPLCIGLNCALGAAEMRPFIEIIGKC-----TTAYVLCYPNA-GLPNT----FGD 283

Query: 264 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 323
             E P  +         ++ +A +     V  +GGCCG  P HIR IAE +   +  +PP
Sbjct: 284 YDETPSMMAKH------LKDFAMDGL---VNIVGGCCGSTPDHIREIAEAVKNCKPRVPP 334

Query: 324 ASEKHG 329
           A+   G
Sbjct: 335 ATAFEG 340


>5DML-A nrPDB
          Length = 310

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 17  LNAGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFT 75
           L+  +I++ DG     LE RG   A   W+ +  VE+PE +R++H ++ RAG+    T +
Sbjct: 11  LDKQDILLLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITAS 70

Query: 76  FYASEDKLENRGNYVLEKISGQEVNEAACDIARQVAD--------EGDALVAGGVSQTPS 127
           + A+      RG   L++   + +   + ++AR+  +         G  LVAG V    +
Sbjct: 71  YQATPAGFAARG---LDEAQSKALIGKSVELARKAREAYLAENPQAGTLLVAGSVGPYGA 127

Query: 128 YLSCKSE--------TEVKKVFLQ-QLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIA 176
           YL+  SE         E  + F + ++E  +    D L  E   +  E     E L A
Sbjct: 128 YLADGSEYRGDYHCSVEAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELLTA 185


>1F8S-A nrPDB
          Length = 498

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 273 PRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWG 332
           P V  +W + KYA          +GG   F PY  +  ++ L   +G +  A E      
Sbjct: 414 PSVIQKWSLDKYA----------MGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH 463

Query: 333 SGLDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPD 371
             +D   K  +RA AR     ++ +AS  P    +S  +
Sbjct: 464 GWIDSTIKSGLRA-AR-----DVNLASENPSGIHLSNDN 496


>4V6U-AD nrPDB
          Length = 180

 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 47  EAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDI 106
           +A +E  + + +L R  L     V+        ED LE R    L+ I  ++        
Sbjct: 65  QAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERR----LQTIVYKKGLARTMRQ 120

Query: 107 ARQVADEGDALVAGGVSQTPSYLSCKSETEV 137
           ARQ+   G   V G + ++PSYL  K E + 
Sbjct: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDT 151


>2UYY-A nrPDB
          Length = 316

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 182 AATMCIGPEGDLHGVPPGECAVRLVKAGASII 213
           A  + +GP G L G+ PG+C V +    A  +
Sbjct: 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTV 131


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

1UMY-A nrPDB                                                          688   0.0  
1LT8-A nrPDB                                                          683   0.0  
1Q7Q-A nrPDB                                                          337   4e-93
4CCZ-A nrPDB                                                          314   4e-86
5DML-A nrPDB                                                          209   2e-54

Sequences not found previously or not previously below threshold:

4QI6-A nrPDB                                                           37   0.017
4QI5-A nrPDB                                                           37   0.017
3AJB-A nrPDB                                                           35   0.066
1VRD-A nrPDB                                                           33   0.25 
5EF4-A nrPDB                                                           32   0.45 
3DSD-A nrPDB                                                           31   0.90 
6FVU-L nrPDB                                                           31   1.4  
6EF0-L nrPDB                                                           30   1.9  
5WVI-L nrPDB                                                           30   1.9  
3A0V-A nrPDB                                                           29   3.0  
2OLS-A nrPDB                                                           29   3.0  
1WYD-A nrPDB                                                           29   4.8  
6B5K-A nrPDB                                                           29   5.1  
2Z3V-A nrPDB                                                           28   8.2  


CONVERGED!
>1UMY-A nrPDB
          Length = 407

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/405 (93%), Positives = 392/405 (96%)

Query: 1   MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
           M P+ GKKAK+GILERLNAGE+VIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1   MAPIAGKKAKRGILERLNAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 120
           REFLRAGSNVMQTFTFYASEDKLENRGNYV EKISGQ+VNEAACDIARQVADEGDALVAG
Sbjct: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 121 GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180
           GVSQTPSYLSCKSETEVKK+F QQLEVFMKKNVDFLIAEYFEHVEEAVWAVE L  SGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKIFHQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKTSGKP 180

Query: 181 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 240
           +AATMCIGPEGDLHGV PGECAVRLVKAGA+I+GVNCHFDP+ SL+T+KLMKEGLEAARL
Sbjct: 181 IAATMCIGPEGDLHGVSPGECAVRLVKAGAAIVGVNCHFDPSTSLQTIKLMKEGLEAARL 240

Query: 241 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
           KA+LMSQPLAYHTPDC KQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 360
           GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPW+RARARKEYW+NLRIASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARKEYWQNLRIASG 360

Query: 361 RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKS 405
           RPYNPSMSKPD WGVTKG AELMQQKEATTEQQL+ LFEKQKFKS
Sbjct: 361 RPYNPSMSKPDAWGVTKGAAELMQQKEATTEQQLRALFEKQKFKS 405


>1LT8-A nrPDB
          Length = 406

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/406 (98%), Positives = 400/406 (98%)

Query: 1   MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
           M PVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1   MAPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 120
           REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAA DIARQVADEGDALVAG
Sbjct: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVADEGDALVAG 120

Query: 121 GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180
           GVSQTPSYLS KSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP
Sbjct: 121 GVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180

Query: 181 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 240
           VAATM IGPEGDLHGVPPGE AVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAA+L
Sbjct: 181 VAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAAQL 240

Query: 241 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
           KAHLMSQPLAYHTPD NKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 360
           GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 360

Query: 361 RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKSQ 406
           RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKSQ
Sbjct: 361 RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKSQ 406


>1Q7Q-A nrPDB
          Length = 566

 Score =  337 bits (865), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 32/312 (10%)

Query: 14  LERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQT 73
           + +L +  +++ DG +     K GY        E  ++ P+ V ++HR ++ +GS+V+ T
Sbjct: 7   VSKLLSERVLLLDGAYGTEFMKYGY---DDLPEELNIKAPDVVLKVHRSYIESGSDVILT 63

Query: 74  FTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAGGVSQT---PSYLS 130
            TF A+  KL   G  + +K+    +   A  IAR+ A  G+ LV G +  T   P  L 
Sbjct: 64  NTFGATRMKLRKHG--LEDKL--DPIVRNAVRIARRAA--GEKLVFGDIGPTGELPYPLG 117

Query: 131 CKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVA--ATMCIG 188
                E  + F + +E+ +++ VD +I E F  + E   AV       + V   A M   
Sbjct: 118 STLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMTFD 177

Query: 189 PEGD-LHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARLKAHLMSQ 247
            +G  L G  P   A+   +     +G+NC   P   L   + + +  +       L+ +
Sbjct: 178 EKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQYTD-----KFLVVE 232

Query: 248 PLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHI 307
           P A        +  ++  +  + L+P      D   +    Y LGV   GGCCG  P H+
Sbjct: 233 PNA-------GKPIVENGKTVYPLKPH-----DFAVHIDSYYELGVNIFGGCCGTTPEHV 280

Query: 308 RAIAEELAPERG 319
           +   + L   + 
Sbjct: 281 KLFRKVLGNRKP 292


>4CCZ-A nrPDB
          Length = 644

 Score =  314 bits (805), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 149/361 (41%), Gaps = 62/361 (17%)

Query: 8   KAKKGILERLNAGEIVIGDGGFVFALEK--------RGYVKAGPWTPE------AAVEHP 53
           K  +  +  +    I++ DGG    +++        RG        P        ++  P
Sbjct: 3   KTLRDEINAILQKRIMVLDGGMGTMIQREKLNEEHFRGQEFKDHARPLKGNNDILSITQP 62

Query: 54  EAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADE 113
           + + Q+H+E+L AG+++++T TF ++      + +Y LE ++   +N  +  +AR+ A+E
Sbjct: 63  DVIYQIHKEYLLAGADIIETNTFSSTSIA---QADYGLEHLA-YRMNMCSAGVARKAAEE 118

Query: 114 GDA------LVAGGVSQTPSYLSCKSETE-----------VKKVFLQQLEVFMKKNVDFL 156
                     VAG +  T   LS     E           + + + +Q +  +   VD L
Sbjct: 119 VTLQTGIKRFVAGALGPTNKTLSVSPSVERPDYRNITFDELVEAYQEQAKGLLDGGVDIL 178

Query: 157 IAEYF---EHVEEAVWAVETLIA---SGKPVAAT-MCIGPEGDLHGVPPGECAVRLVKAG 209
           + E      + + A++A++ L     + +P+  +   +   G       GE  V  V  G
Sbjct: 179 LIETIFDTANAKAALFALQNLFEEKYAPRPIFISGTIVDKSGRTLSGQTGEGFVISVSHG 238

Query: 210 ASI-IGVNCHFDPTISLKTVKLMKEGLEAARLKAHLMSQPLAYHTPDCNKQGFIDLPEFP 268
             + IG+NC          ++++ +        A+++  P A   P+     F D  E P
Sbjct: 239 EPLCIGLNCALGAAEMRPFIEIIGKC-----TTAYVLCYPNA-GLPNT----FGDYDETP 288

Query: 269 FGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKH 328
             +         ++ +A +     V  +GGCCG  P HIR IAE +   +  +PPA+   
Sbjct: 289 SMMAKH------LKDFAMDGL---VNIVGGCCGSTPDHIREIAEAVKNCKPRVPPATAFE 339

Query: 329 G 329
           G
Sbjct: 340 G 340


>5DML-A nrPDB
          Length = 310

 Score =  209 bits (532), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 125/316 (39%), Gaps = 42/316 (13%)

Query: 17  LNAGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFT 75
           L+  +I++ DG     LE RG   A   W+ +  VE+PE +R++H ++ RAG+    T +
Sbjct: 11  LDKQDILLLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITAS 70

Query: 76  FYASEDKLENRGNYVLEKISGQEVNEAACDIARQVAD--------EGDALVAGGVSQTPS 127
           + A+      RG   L++   + +   + ++AR+  +         G  LVAG V    +
Sbjct: 71  YQATPAGFAARG---LDEAQSKALIGKSVELARKAREAYLAENPQAGTLLVAGSVGPYGA 127

Query: 128 YLSCKSE--------TEVKKVFLQ-QLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG 178
           YL+  SE         E  + F + ++E  +    D L  E   +  E     E L A  
Sbjct: 128 YLADGSEYRGDYHCSVEAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELLTAYP 187

Query: 179 KPVA-ATMCIGPEGDLHGVPPGECAVRLVKAGAS---IIGVNCHFDPTISLKTVKLMKEG 234
           +  A  +  +     L    P    V L+ AG      +G+NC     I+L+      + 
Sbjct: 188 RARAWFSFTLRDSEHLSDGTPLRDVVALL-AGYPQVVALGINC-----IALENTTAALQH 241

Query: 235 LEAARLKAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVR 294
           L    +   L+  P +    D   + +    E         A    +  Y  +    G R
Sbjct: 242 LHGLTVLP-LVVYPNSGEHYDAVSKTWHHHGE-------HCAQ---LADYLPQWQAAGAR 290

Query: 295 YIGGCCGFEPYHIRAI 310
            IGGCC   P  I A+
Sbjct: 291 LIGGCCRTTPADIAAL 306


>4QI6-A nrPDB
          Length = 807

 Score = 36.7 bits (83), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 35/182 (19%)

Query: 37  GYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQT--FTFYASEDKLENRGNYVLEKI 94
           GY        +  + HP+ V     +F  A  + +++   ++  S   +  +    +  +
Sbjct: 525 GYNLDDHLNTDTVISHPDVVF---YDFYEAWDDPIESDKNSYLESRTGILAQAAPNIGPM 581

Query: 95  SGQEVNEAACDIARQVADEGDALVAGGVSQ------------------------TPSYLS 130
             +E+  A   I RQ+  +  A V G +                          TPS  +
Sbjct: 582 FWEEIVGAD-GIVRQL--QWTARVEGSLGAPNGHTMTMSQYLGRGATSRGRMTITPSLTT 638

Query: 131 CKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATMCIGPE 190
             S+    K    + E  ++  ++  +    ++V    W       + +    +M + P 
Sbjct: 639 IVSDVPYLKDPNDK-EAVIQGIIN--LQNALQNVANLTWLFPNSTITPREYVESMVVSPS 695

Query: 191 GD 192
             
Sbjct: 696 NR 697


>4QI5-A nrPDB
          Length = 585

 Score = 36.7 bits (83), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 35/182 (19%)

Query: 37  GYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQT--FTFYASEDKLENRGNYVLEKI 94
           GY        +  + HP+ V     +F  A  + +++   ++  S   +  +    +  +
Sbjct: 303 GYNLDDHLNTDTVISHPDVVF---YDFYEAWDDPIESDKNSYLESRTGILAQAAPNIGPM 359

Query: 95  SGQEVNEAACDIARQVADEGDALVAGGVSQ------------------------TPSYLS 130
             +E+  A   I RQ+  +  A V G +                          TPS  +
Sbjct: 360 FWEEIVGAD-GIVRQL--QWTARVEGSLGAPNGHTMTMSQYLGRGATSRGRMTITPSLTT 416

Query: 131 CKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATMCIGPE 190
             S+    K    + E  ++  ++  +    ++V    W       + +    +M + P 
Sbjct: 417 IVSDVPYLKDPNDK-EAVIQGIIN--LQNALQNVANLTWLFPNSTITPREYVESMVVSPS 473

Query: 191 GD 192
             
Sbjct: 474 NR 475


>3AJB-A nrPDB
          Length = 330

 Score = 34.8 bits (78), Expect = 0.066,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 6/150 (4%)

Query: 142 LQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATMCIGPEGDLHGVPPGEC 201
            +      K     L+  Y    EE   AV+    S + +     +    D+   P    
Sbjct: 176 HKSSSWINKDGSKPLLCHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFST 235

Query: 202 AV-RLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARLKAHLMSQPLAYHTPDCNKQG 260
            +   +  G S +  N          T + ++ G     L +  +S PLA   P  N Q 
Sbjct: 236 VLNTCLNRGFSRLLDNMA---EFFRPTEQDLQHGNSMNSLSS--VSLPLAKIIPIVNGQI 290

Query: 261 FIDLPEFPFGLEPRVATRWDIQKYAREAYN 290
                E P      + T   ++ +A   Y 
Sbjct: 291 HSVCSETPSHFVQDLLTMEQVKDFAANVYE 320


>1VRD-A nrPDB
          Length = 494

 Score = 32.8 bits (73), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 112 DEGDALVAGGVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFE-HVEEAVWA 170
           ++G  LV   V  +P  +             +++E  +K  VD ++ +    H    +  
Sbjct: 222 EKGRLLVGAAVGTSPETM-------------ERVEKLVKAGVDVIVIDTAHGHSRRVIET 268

Query: 171 VETLIA--SGKPVAATMCIGPEGDLHGVPPGECAVR 204
           +E + A     PV A     PEG    +  G  AV+
Sbjct: 269 LEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVK 304


>5EF4-A nrPDB
          Length = 385

 Score = 32.1 bits (71), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 275 VATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERG--FLPPASEKHGSWG 332
           VAT   +  +  + Y+ GV    G CG EP H   I      E+G  F    +    +WG
Sbjct: 259 VATGIQLSGHGLQFYSEGV--YTGDCGTEPNHGVGIVGYGENEKGIKFWTVKNSWGPTWG 316

Query: 333 SGLDMHTKPWVRARARKEYWENLRIASGRPY----NPSMSKPDG 372
               +H    ++  ARKE    + + S  P     NP    P+G
Sbjct: 317 EKGYIH----LQRGARKEGLCGVAMHSSFPIMNDPNPPKDDPNG 356


>3DSD-A nrPDB
          Length = 349

 Score = 30.9 bits (68), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 134 ETEVKKVFLQQLEVFMKKNVDFLIAE---------YFEHVEEAVWAVETLIASGKPVAA 183
           E E  + F   LE+ +++NVDF++               +++A+  ++       PV A
Sbjct: 22  EEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFA 80


>6FVU-L nrPDB
          Length = 388

 Score = 30.5 bits (67), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 14/119 (11%)

Query: 143 QQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATMCIGPEGDLHGVPPGECA 202
           +Q E+     +  L     E + E    +E  + + +         P+G L   PPG   
Sbjct: 126 EQGEITFD-GIGGLT----EQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGK 180

Query: 203 VRLVKAGASIIGVNCHFDPT---------ISLKTVKLMKEGLEAARLKAHLMSQPLAYH 252
             L KA A+ IG N  F P           S + ++ M    +        M +  A  
Sbjct: 181 TLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG 239


>6EF0-L nrPDB
          Length = 273

 Score = 30.1 bits (66), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 14/119 (11%)

Query: 143 QQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATMCIGPEGDLHGVPPGECA 202
           +Q E+     +  L     E + E    +E  + + +         P+G L   PPG   
Sbjct: 11  EQGEITFD-GIGGLT----EQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGK 65

Query: 203 VRLVKAGASIIGVNCHFDPT---------ISLKTVKLMKEGLEAARLKAHLMSQPLAYH 252
             L KA A+ IG N  F P           S + ++ M    +        M +  A  
Sbjct: 66  TLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG 124


>5WVI-L nrPDB
          Length = 437

 Score = 30.1 bits (66), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 14/119 (11%)

Query: 143 QQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATMCIGPEGDLHGVPPGECA 202
           +Q E+     +  L     E + E    +E  + + +         P+G L   PPG   
Sbjct: 174 EQGEITFD-GIGGLT----EQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGK 228

Query: 203 VRLVKAGASIIGVNCHFDPT---------ISLKTVKLMKEGLEAARLKAHLMSQPLAYH 252
             L KA A+ IG N  F P           S + ++ M    +        M +  A  
Sbjct: 229 TLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG 287


>3A0V-A nrPDB
          Length = 96

 Score = 29.4 bits (64), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 143 QQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATM 185
           +QL    K+NV     +     EE     E++  + +PV   M
Sbjct: 22  EQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNM 64


>2OLS-A nrPDB
          Length = 794

 Score = 29.4 bits (64), Expect = 3.0,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 102/342 (29%), Gaps = 35/342 (10%)

Query: 4   VGGKKAKKGILERLNAGEIVIGDGGFVFALEK-RGYVKAGPWTPEAAVEHPEAVRQLHRE 62
           VGGK A  G +      + V   GGF    E  R ++     +   +    +   +   E
Sbjct: 20  VGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHNGLSERISAALAKLDVEDVAE 79

Query: 63  FLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIA-RQVADEGDALVAGG 121
             R G  + Q        ++L+        K+       A   +A R  A   D   A  
Sbjct: 80  LARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADA-GGADISVAVRSSATAEDLPDASF 138

Query: 122 VSQTPSYLSCKSETEVKKVFLQQLEVFM-KKNVDFLIAEYFEH-VEEAVWAVETL----- 174
             Q  ++L+      VK+            + + + + + FEH +      V+ +     
Sbjct: 139 AGQQETFLNINGLDNVKEAMHHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDS 198

Query: 175 ----------IASGKP----VAATMCIGPEGDLHGVPPGECAVR--LVKAGASIIGVNCH 218
                       SG      V ++  +G       V P E  V    +KAG   I +   
Sbjct: 199 GASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAVNPDEFYVFKPTLKAGKPAI-LRKT 257

Query: 219 FDPTISLKTVKLMKEGLEAARLKAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATR 278
                         E  ++             +   D   +   +L  +   +E      
Sbjct: 258 MGSKHIKMIFTDKAEAGKSVTNVDVPEEDRNRFSITD---EEITELAHYALTIEKHYGRP 314

Query: 279 WDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGF 320
            DI+ + R+  +  +  +       P  +++  E     R F
Sbjct: 315 MDIE-WGRDGLDGKLYILQA----RPETVKSQEEGNRNLRRF 351


>1WYD-A nrPDB
          Length = 429

 Score = 28.6 bits (62), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 221 PTISLKTVKL-MKEGLEAARLKAHLMSQPLAYHTPDCN------KQGFIDLPEFPFGLEP 273
           P + +   +L   E +E  R K + +       TP+        K+    + ++P    P
Sbjct: 269 PEVKIPIKRLKYTEAIEILRSKGYNIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARP 328

Query: 274 RVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSW 331
                        E+++L  +++    G    H R + EE   ++G  P + E    W
Sbjct: 329 FYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKW 386


>6B5K-A nrPDB
          Length = 296

 Score = 28.6 bits (62), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 5   GGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHR 61
           G KK+ +G  E     ++ +  G     +  RG       T ++ ++  + VR L R
Sbjct: 185 GLKKSARGEYEITEVNQVYLNQGRLAVEVLARGTAWLDTGTFDSLLDAADFVRTLER 241


>2Z3V-A nrPDB
          Length = 137

 Score = 27.8 bits (60), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 12/76 (15%)

Query: 116 ALVAGGVSQTPSYLSCKSETEVKKVFLQQLEVFMKK-----NV---DFLIAEYFEHVEEA 167
            +V       P YL      E  +  L++ E  +++      V   D L+ E       A
Sbjct: 33  LIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDALLLEGVP----A 88

Query: 168 VWAVETLIASGKPVAA 183
              ++   A    +  
Sbjct: 89  EAILQAARAEKADLIV 104


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.306    0.124    0.331 

Lambda     K      H
   0.267   0.0375    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,256,846
Number of Sequences: 36641
Number of extensions: 555570
Number of successful extensions: 1591
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1548
Number of HSP's gapped (non-prelim): 36
length of query: 406
length of database: 10,336,785
effective HSP length: 99
effective length of query: 307
effective length of database: 6,709,326
effective search space: 2059763082
effective search space used: 2059763082
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 60 (27.8 bits)