BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q92558 (559 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4N78-D nrPDB 1107 0.0 3P8C-D nrPDB 371 e-103 2VCP-D nrPDB 34 0.20 6MAT-A nrPDB 33 0.22 3M3N-W nrPDB 33 0.30 1VYF-A nrPDB 29 5.4 3IG3-A nrPDB 28 8.5 5MYJ-AB nrPDB 28 9.9 2V1Y-A nrPDB 28 9.9 >4N78-D nrPDB Length = 559 Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/559 (100%), Positives = 559/559 (100%) Query: 1 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH 60 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH Sbjct: 1 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH 60 Query: 61 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP 120 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP Sbjct: 61 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP 120 Query: 121 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK Sbjct: 121 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 Query: 181 QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQ 240 QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQ Sbjct: 181 QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQ 240 Query: 241 TYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDAKPIPTCISSA 300 TYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDAKPIPTCISSA Sbjct: 241 TYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDAKPIPTCISSA 300 Query: 301 TGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPA 360 TGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPA Sbjct: 301 TGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPA 360 Query: 361 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEV 420 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEV Sbjct: 361 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEV 420 Query: 421 QGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480 QGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP Sbjct: 421 QGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480 Query: 481 ASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIA 540 ASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIA Sbjct: 481 ASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIA 540 Query: 541 VEYSDSEDDSEFDEVDWLE 559 VEYSDSEDDSEFDEVDWLE Sbjct: 541 VEYSDSEDDSEFDEVDWLE 559 >3P8C-D nrPDB Length = 279 Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH 60 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH Sbjct: 1 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH 60 Query: 61 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP 120 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP Sbjct: 61 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP 120 Query: 121 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK Sbjct: 121 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 Query: 181 QKNLDR 186 QKNLDR Sbjct: 181 QKNLDR 186 Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 75/75 (100%), Positives = 75/75 (100%) Query: 485 KRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYS 544 KRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYS Sbjct: 205 KRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYS 264 Query: 545 DSEDDSEFDEVDWLE 559 DSEDDSEFDEVDWLE Sbjct: 265 DSEDDSEFDEVDWLE 279 >2VCP-D nrPDB Length = 93 Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 451 PPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKR-HPSTLPVISDARSVLLEAIRKGI 509 P G H P+TA G L+ Q+ ++ K+ ++ PV R LL+ IR+GI Sbjct: 1 PSDGDHQVPTTA-GNKAALL-----DQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGI 54 Query: 510 QLRKVEEQRE 519 QL+ V + +E Sbjct: 55 QLKSVADGQE 64 >6MAT-A nrPDB Length = 813 Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 162 KEKMLQDTEDKRKEKRKQKQKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLL 221 K++ML+D+ ++ RK++ K + + + +R RE QK AQ A+ DANLL Sbjct: 56 KKRMLEDSIERVLAVRKEQAKAEEETDSDDLIE--AQERERERQKAAQ----AQRDANLL 109 Query: 222 HKHIEVANGPAS 233 ++ I + G AS Sbjct: 110 NRQIAKSWGFAS 121 >3M3N-W nrPDB Length = 101 Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 484 PKRHPSTLPVISDARSVLLEAIRKGIQLRKVEE 516 K ++ PV + R LL+ IR+GIQL+KVE+ Sbjct: 20 KKVEQNSRPVSASGRDALLDQIRQGIQLKKVEQ 52 Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 21/34 (61%) Query: 484 PKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQ 517 K ++ PV + R LL+ IR+GIQL+K E Q Sbjct: 48 KKVEQNSRPVSASGRDALLDQIRQGIQLKKTETQ 81 >1VYF-A nrPDB Length = 135 Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 52 FGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDI 95 FGE F+E S V S+ E+ ++ TQ+DPK + ++++ Sbjct: 68 FGEEFDEKTSDGRNVKSVVEKNSESKLTQTQVDPKNTTVIVREV 111 >3IG3-A nrPDB Length = 627 Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 13/81 (16%) Query: 6 RNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH----- 60 RN D H H RG K V+ I L ++ +L K+ +D+F +F+ AH Sbjct: 389 RNHD--HTDHREGDRGSK----MVSEIYLTRLLATKGTLQKFVDDLFETVFSTAHRGSAL 442 Query: 61 --SFSFRVNSLQERVDRLSVS 79 + + + L E+ D+ +S Sbjct: 443 PLAIKYMFDFLDEQADQRQIS 463 >5MYJ-AB nrPDB Length = 255 Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 19/38 (50%) Query: 115 KTLPIPLQETYDVCEQPPPLNILTPYRDDGKEGLKFYT 152 KTL IP+ D P P++++ P DD +K T Sbjct: 177 KTLGIPVVAMVDTNADPEPIDVVIPANDDAIRAVKLIT 214 >2V1Y-A nrPDB Length = 108 Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 15/79 (18%) Query: 10 PRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSL 69 PR L LP G+ LEC+ +L I ELF EA + L Sbjct: 18 PRILVECLLPNGMIVTLECLREATLITIKH--------------ELFKEARKYPLH-QLL 62 Query: 70 QERVDRLSVSVTQLDPKEE 88 Q+ + VSVTQ +EE Sbjct: 63 QDESSYIFVSVTQEAEREE 81 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4N78-D nrPDB 875 0.0 3P8C-D nrPDB 374 e-104 Sequences not found previously or not previously below threshold: 4UUD-B nrPDB 40 0.003 6AHD-v nrPDB 38 0.013 4N78-F nrPDB 37 0.029 6MAT-A nrPDB 35 0.086 3W4R-A nrPDB 35 0.089 2ZZQ-A nrPDB 34 0.17 1QPA-A nrPDB 34 0.17 6CB0-A nrPDB 34 0.22 2J0K-A nrPDB 34 0.22 3M3N-W nrPDB 34 0.27 4XY3-A nrPDB 33 0.45 5KHS-B nrPDB 32 0.57 3T9K-A nrPDB 32 0.91 5G04-F nrPDB 32 0.92 6F1U-X nrPDB 32 0.95 5MYJ-AB nrPDB 31 1.3 2VCP-D nrPDB 31 1.5 3ML0-A nrPDB 30 2.2 5XJC-x nrPDB 30 3.5 6NWP-A nrPDB 30 3.8 6B1T-X nrPDB 30 4.1 1VYF-A nrPDB 29 4.3 2V1Y-A nrPDB 29 4.7 2BBU-A nrPDB 28 7.0 6AH0-2 nrPDB 28 7.3 CONVERGED! >4N78-D nrPDB Length = 559 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 559/559 (100%), Positives = 559/559 (100%) Query: 1 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH 60 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH Sbjct: 1 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH 60 Query: 61 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP 120 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP Sbjct: 61 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP 120 Query: 121 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK Sbjct: 121 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 Query: 181 QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQ 240 QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQ Sbjct: 181 QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQ 240 Query: 241 TYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDAKPIPTCISSA 300 TYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDAKPIPTCISSA Sbjct: 241 TYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDAKPIPTCISSA 300 Query: 301 TGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPA 360 TGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPA Sbjct: 301 TGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPA 360 Query: 361 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEV 420 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEV Sbjct: 361 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEV 420 Query: 421 QGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480 QGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP Sbjct: 421 QGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480 Query: 481 ASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIA 540 ASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIA Sbjct: 481 ASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIA 540 Query: 541 VEYSDSEDDSEFDEVDWLE 559 VEYSDSEDDSEFDEVDWLE Sbjct: 541 VEYSDSEDDSEFDEVDWLE 559 >3P8C-D nrPDB Length = 279 Score = 374 bits (961), Expect = e-104, Method: Composition-based stats. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH 60 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH Sbjct: 1 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH 60 Query: 61 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP 120 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP Sbjct: 61 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP 120 Query: 121 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK Sbjct: 121 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 Query: 181 QKNLDR 186 QKNLDR Sbjct: 181 QKNLDR 186 Score = 156 bits (395), Expect = 2e-38, Method: Composition-based stats. Identities = 75/75 (100%), Positives = 75/75 (100%) Query: 485 KRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYS 544 KRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYS Sbjct: 205 KRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYS 264 Query: 545 DSEDDSEFDEVDWLE 559 DSEDDSEFDEVDWLE Sbjct: 265 DSEDDSEFDEVDWLE 279 >4UUD-B nrPDB Length = 864 Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 17/101 (16%) Query: 316 TPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVP------ 369 T +P PPP S + R S TS+P P P PPA P Sbjct: 747 TTTVSTPMPPPVDDSWLQVQSVPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAG 806 Query: 370 -----PPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAP 405 PP P + PG +P P PP PS P RA P Sbjct: 807 SALGGAPPVPSR--PGA---SPDPFGPPPQVPSRP-NRAPP 841 Score = 29.7 bits (65), Expect = 3.3, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 32/103 (31%) Query: 290 AKPIPTCISSATGLIENRP---QSPATGRTPVFVSPTPPPP------------------- 327 + P+P + + +++ P +SP + TP +P PP Sbjct: 751 STPMPPPVDDSWLQVQSVPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGSALG 810 Query: 328 -PPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVP 369 PP+PS S P P PPP P P VP Sbjct: 811 GAPPVPSRPGAS---------PDPFGPPPQVPSRPNRAPPGVP 844 Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 36/111 (32%), Gaps = 21/111 (18%) Query: 384 PAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPV 443 P PPP+ +Q V +P G P P P P + P+ P Sbjct: 753 PMPPPVDDSWLQ----------------VQSVPAGRRS--PTSSPTPQRRAPAVPPARPG 794 Query: 444 TVTALAHPPSGLHPTPSTAPGPHVPLMPPSP--PSQVIPASEPKRHPSTLP 492 + PP P P P P P P +P S P R P +P Sbjct: 795 SRGPAPGPPPAGSALGGAPPVPSRPGASPDPFGPPPQVP-SRPNRAPPGVP 844 >6AHD-v nrPDB Length = 464 Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats. Identities = 45/127 (35%), Positives = 52/127 (40%), Gaps = 16/127 (12%) Query: 348 PPPPVPPPPP---PPATALQAPAV---PPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVA 401 P P V PP P PP + + PA PP P APGV PAP P PP A Sbjct: 311 PAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSA 370 Query: 402 RAAPVCETV-PVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPS-GLHPTP 459 P V P P + G+ PP P PG+ P P HP + G+HP P Sbjct: 371 GVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGV-----HPSAPGVHPQP 425 Query: 460 STAPGPH 466 PG H Sbjct: 426 ---PGVH 429 Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 45/126 (35%), Gaps = 27/126 (21%) Query: 382 LHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPP---LPPPGIR 438 +HP P + PP PP VHP G P PP P P PG+ Sbjct: 301 VHPPAPGVHPPAPGVHPPAP---------GVHPPTSGVHPPAPGVHPPAPGVHPPAPGVH 351 Query: 439 PSSP----------VTVTALAHPPS-GLHPTPST----APGPHVPLMPPSPPSQVIPASE 483 P +P +A HP + G+HP APG H P P + + Sbjct: 352 PPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQP 411 Query: 484 PKRHPS 489 P HPS Sbjct: 412 PGVHPS 417 >4N78-F nrPDB Length = 514 Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 345 TSTPPPPVPPP------PPPPATALQAPA-VPPPPAPLQIAPGVLHPAPPPIAPPLVQPS 397 T +PP P P PP PAT+ APA + P P AP +A P+ Sbjct: 276 TPSPPSVFPAPAGSAGTPPLPATSASAPAPLVPATVPSSTAPDAAAGGAQTLADGFTSPT 335 Query: 398 PPVARAAP 405 PPV + P Sbjct: 336 PPVVSSTP 343 Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 8/112 (7%) Query: 317 PVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQ 376 P+ V PP P P+ + + + +++ P P+ P P +TA A A Sbjct: 271 PIAVPTPSPPSVFPAPAGSAGTPPLPATSASAPAPLVPATVPSSTAPDAAA----GGAQT 326 Query: 377 IAPGVLHPAPPPIA--PPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPP 426 +A G P PP ++ PP P + P P P G + PP Sbjct: 327 LADGFTSPTPPVVSSTPPTGHPVQFYSMNRPASRHTP--PTIGGSLPYRRPP 376 Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 14/59 (23%) Query: 422 GLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480 +P P PP P P +P P P+T+ PL+P + PS P Sbjct: 273 AVPTPSPPSVFPAPAGSAGTP--------------PLPATSASAPAPLVPATVPSSTAP 317 Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 17/98 (17%) Query: 279 PPPPPMHGAGDAKPIPTCISSATGLIENRPQSPATGRTPV---FVSPTPP--PPPPPLPS 333 PP P + A +P + S+T P + A G + F SPTPP PP Sbjct: 293 PPLPATSASAPAPLVPATVPSSTA-----PDAAAGGAQTLADGFTSPTPPVVSSTPPTGH 347 Query: 334 ALSTSSL-RASMTSTPP------PPVPPPPPPPATALQ 364 + S+ R + TPP P PP T+LQ Sbjct: 348 PVQFYSMNRPASRHTPPTIGGSLPYRRPPSITSQTSLQ 385 >6MAT-A nrPDB Length = 813 Score = 35.0 bits (79), Expect = 0.086, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 162 KEKMLQDTEDKRKEKRKQKQKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLL 221 K++ML+D+ ++ RK++ K + + + +R RE QK AQ A+ DANLL Sbjct: 56 KKRMLEDSIERVLAVRKEQAKAEEETDSDDLI--EAQERERERQKAAQ----AQRDANLL 109 Query: 222 HKHIEVANGPAS 233 ++ I + G AS Sbjct: 110 NRQIAKSWGFAS 121 >3W4R-A nrPDB Length = 554 Score = 35.0 bits (79), Expect = 0.089, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 308 PQSPATGRTPVFVSPTPPPPPP----PLPSALST--SSLRASMTSTPPPPVPPPPPPPAT 361 P+S T TP + P P P P+P+ ++ ++ + S TS P P P P T Sbjct: 405 PRSGNTTPTPEWARPPSTPSDPSEGDPIPTTTTSKPATSKPSTTSQ-PATTSRPEPKPTT 463 Query: 362 ALQAPA 367 +L PA Sbjct: 464 SLPTPA 469 Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 7/76 (9%) Query: 278 PPPPPPMHGAGDAKPIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALST 337 PP P GD PIPT +S P+T P S P P LP+ T Sbjct: 419 PPSTPSDPSEGD--PIPTTTTSKPA-----TSKPSTTSQPATTSRPEPKPTTSLPTPAPT 471 Query: 338 SSLRASMTSTPPPPVP 353 +S P +P Sbjct: 472 ASTTEEEAQQPEVELP 487 >2ZZQ-A nrPDB Length = 552 Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 17/112 (15%) Query: 318 VFVSPTPPPPPPPLPSALS---------TSSLRASMTSTPPPP--VPPPPPPPATALQAP 366 +F+ PTP PP PL L ++ L + S PP P V P P A+ AP Sbjct: 1 MFIQPTPSPPMSPLRPGLDLVFANPPDHSAPLGVTRPSAPPLPHVVDLPQLGPRRAV-AP 59 Query: 367 AVPPPPAPLQIAPGVL-----HPAPPPIAPPLVQPSPPVARAAPVCETVPVH 413 A PP P + G + + + P+ + + V AAP+ +P+ Sbjct: 60 AHDTPPVPDVDSRGAILRRQYNLSTSPLTSSVATGTNLVLYAAPLSPLLPLQ 111 Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Query: 431 PLPPPGIRPSSPVTVTALAHPPSGLHP----TPSTAPGPHVPLMPP-SPPSQVIPASEPK 485 P P P + P P A+PP P PS P PHV +P P V PA + Sbjct: 5 PTPSPPMSPLRPGLDLVFANPPDHSAPLGVTRPSAPPLPHVVDLPQLGPRRAVAPAHDTP 64 Query: 486 RHPSTLPVISDARSVLL 502 P D+R +L Sbjct: 65 PVPDV-----DSRGAIL 76 >1QPA-A nrPDB Length = 345 Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 320 VSPTPPP---PPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAP 374 V P P P P P+ + + + + STP P + P P A+ + +PPPP+P Sbjct: 289 VIPAPKPVNFGPSFFPAGKTHADIEQACASTPFPTLITAPGPSASVAR---IPPPPSP 343 >6CB0-A nrPDB Length = 378 Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 22/116 (18%) Query: 145 KEGLKFYT----NPSYFFDLWKEKMLQDTEDKRKEKRKQKQKNLDRPHEPEKVPRAPHDR 200 +EG+ + T NP++ D + + +Q + + K+++ Q + EP V Sbjct: 250 EEGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVT------ 303 Query: 201 RREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQTYVDHMDGSYSLSALP 256 A +AE+ A+L+ + + NG F RPQ +G +L ++P Sbjct: 304 -------APSLTIAENMADLIDGYCRLVNGATQSFIIRPQK-----EGERALPSIP 347 >2J0K-A nrPDB Length = 656 Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 22/116 (18%) Query: 145 KEGLKFYT----NPSYFFDLWKEKMLQDTEDKRKEKRKQKQKNLDRPHEPEKVPRAPHDR 200 +EG+ + T NP++ D + + +Q + + K+++ Q + EP V Sbjct: 247 EEGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVT------ 300 Query: 201 RREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQTYVDHMDGSYSLSALP 256 A +AE+ A+L+ + + NG F RPQ +G +L ++P Sbjct: 301 -------APSLTIAENMADLIDGYCRLVNGATQSFIIRPQK-----EGERALPSIP 344 >3M3N-W nrPDB Length = 101 Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 22/32 (68%) Query: 485 KRHPSTLPVISDARSVLLEAIRKGIQLRKVEE 516 K ++ PV + R LL+ IR+GIQL+KVE+ Sbjct: 21 KVEQNSRPVSASGRDALLDQIRQGIQLKKVEQ 52 Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 485 KRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQE-AKHERIEND 530 K ++ PV + R LL+ IR+GIQL+K E Q + E IE + Sbjct: 49 KVEQNSRPVSASGRDALLDQIRQGIQLKKTETQEKNPLPSKETIEQE 95 >4XY3-A nrPDB Length = 462 Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 352 VPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQP 396 + PPPPP L + PP + PG PA P+ PP P Sbjct: 286 IDPPPPPQEQGLIPGFLMPPSDGSGVTPGTGMPA-APMVPPTGSP 329 >5KHS-B nrPDB Length = 883 Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 64/193 (33%), Gaps = 22/193 (11%) Query: 283 PMHGAGDAKPIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRA 342 P D + ++ A + P GRT +S P P +A++T++ Sbjct: 502 PEAAVNDVTLLAPSLADADAAAKRLDALPEVGRTTT-LSTFIPADQPEKRAAIATAA--- 557 Query: 343 SMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVAR 402 ST P + PP PPAT Q A + L HP P A + S Sbjct: 558 ---STLLPALTQPPAPPATDAQRVAALKRASDLLGYAAEDHPGPGAAAAQHLSQSLAKLA 614 Query: 403 AA----------PVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIR----PSSPVTVTAL 448 AA +T+ + L Q P LPPP +R P V Sbjct: 615 AADSATRDRAERAFADTLRI-ALNQLAALLQPQEITRDTLPPPLVRDWVAPDGKALVQIS 673 Query: 449 AHPPSGLHPTPST 461 P G+ P T Sbjct: 674 PKVPKGVDPNDDT 686 >3T9K-A nrPDB Length = 390 Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 7/48 (14%) Query: 457 PTPSTAPGPHVPLMPPSPPSQVIPASEP-------KRHPSTLPVISDA 497 P PS P P P PPS+ + + P HP +LP ++DA Sbjct: 172 PKPSIRPRPGDLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADA 219 >5G04-F nrPDB Length = 824 Score = 31.6 bits (70), Expect = 0.92, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 303 LIENRPQSPATGRTPVFVSPTPPPPPPPLP---SALSTSSLRASMTSTPPPPVPPPPPPP 359 L + + P T TP +SPT PP LP S L TS + ++ + PP P Sbjct: 346 LAQTQSSGPQTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIP 405 >6F1U-X nrPDB Length = 577 Score = 31.6 bits (70), Expect = 0.95, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 14/90 (15%) Query: 36 NIIRQLSSLSKYAEDIFGELFNEAHS----FSFRVNSLQERVDRLSVSVTQLDPKEEELS 91 ++ RQ + K D L E H F R + RV L V QL ++EL Sbjct: 129 DMSRQYEQMHKELTDKLEHLEQEKHELRRRFENREGEWEGRVSELETDVKQL---QDELE 185 Query: 92 LQDITMRKAFRSSTI-------QDQQLFDR 114 Q + +R+A R T Q+Q+L D+ Sbjct: 186 RQQLHLREADREKTRAVQELSEQNQRLLDQ 215 >5MYJ-AB nrPDB Length = 255 Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 113 DRKTLPIPLQETYDVCEQPPPLNILTPYRDDGKEGLKFYT 152 + KTL IP+ D P P++++ P DD +K T Sbjct: 175 EAKTLGIPVVAMVDTNADPEPIDVVIPANDDAIRAVKLIT 214 >2VCP-D nrPDB Length = 93 Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 451 PPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRHPSTLPVISDARSVLLEAIRKGIQ 510 P G H P+TA L +Q+ + R PV R LL+ IR+GIQ Sbjct: 1 PSDGDHQVPTTAGNKAALLDQIREGAQLKKVEQNSR-----PVSCSGRDALLDQIRQGIQ 55 Query: 511 LRKVEEQRE 519 L+ V + +E Sbjct: 56 LKSVADGQE 64 >3ML0-A nrPDB Length = 195 Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 22 IKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVT 81 +K +++ N + A+I RQ+++LSK DIF A ++ + ++ R + L Sbjct: 65 VKYDMQVRQNFTPASIQRQIAALSKDERDIFR---GYADGYNAYLEQVRRRPELLPKEYV 121 Query: 82 QLDPKEEELSLQDITM 97 D + E L+ D+ M Sbjct: 122 DFDFQPEPLTDFDVVM 137 >5XJC-x nrPDB Length = 703 Score = 29.7 bits (65), Expect = 3.5, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 20/82 (24%) Query: 384 PAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPV 443 PAP P LVQP + HP GL P P PLP PG+ P PV Sbjct: 564 PAPLPPQGMLVQPGMNLP-----------HP-------GLHPHQTPAPLPNPGLYP-PPV 604 Query: 444 TVTALAHPPSG-LHPTPSTAPG 464 +++ PP L PT +APG Sbjct: 605 SMSPGQPPPQQLLAPTYFSAPG 626 >6NWP-A nrPDB Length = 441 Score = 29.7 bits (65), Expect = 3.8, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 37/109 (33%), Gaps = 17/109 (15%) Query: 281 PPPMHGAGDAKPIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSL 340 PP G +A IP A + + P +G + SP P P Sbjct: 159 PPGQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTP------------ 206 Query: 341 RASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPPI 389 S + TP P PP P A+ V PP A L AP P+ Sbjct: 207 -GSRSRTPSLPTPPTREPKKVAV----VRTPPKSPSSAKSRLQTAPVPM 250 >6B1T-X nrPDB Length = 217 Score = 29.7 bits (65), Expect = 4.1, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Query: 299 SATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTST---PPPPVPPP 355 S G E RP+ P T V PP L L T+ A M + PV Sbjct: 91 SPEGRGEKRPR-PDREETLVTQIDEPPSYEEALKQGLPTTRPIAPMATGVLGQHTPVTLD 149 Query: 356 PPPPATALQAPAVPPPPAPLQIAP 379 PPPA Q P +P P A + P Sbjct: 150 LPPPADTQQKPVLPGPTAVVVTRP 173 >1VYF-A nrPDB Length = 135 Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 52 FGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDI 95 FGE F+E S V S+ E+ ++ TQ+DPK + ++++ Sbjct: 68 FGEEFDEKTSDGRNVKSVVEKNSESKLTQTQVDPKNTTVIVREV 111 >2V1Y-A nrPDB Length = 108 Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 15/79 (18%) Query: 10 PRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSL 69 PR L LP G+ LEC+ +L I ELF EA + L Sbjct: 18 PRILVECLLPNGMIVTLECLREATLITIKH--------------ELFKEARKYPLH-QLL 62 Query: 70 QERVDRLSVSVTQLDPKEE 88 Q+ + VSVTQ +EE Sbjct: 63 QDESSYIFVSVTQEAEREE 81 >2BBU-A nrPDB Length = 164 Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 451 PPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKR 486 PP G P+ S P +P PP+Q +P S PKR Sbjct: 108 PPPGT-PSFSLPPTEPSSEVPEQPPAQALPGSTPKR 142 >6AH0-2 nrPDB Length = 895 Score = 28.5 bits (62), Expect = 7.3, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%) Query: 422 GLPPPPPPPPLPPPGIR-PSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480 G P P PP + G+R P P +A P + PTP+ P P PP Sbjct: 200 GTPVPRPPQDMGQIGVRTPLGP----RVAAPVGPVGPTPTVLPMGAPVPRPRGPPPPPGD 255 Query: 481 ASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIA 540 + PS P I +A+ K +QL+ E R++E ++ E ++ T + Sbjct: 256 ENREMDDPSVGPKIP-------QALEKILQLK---ESRQEEMNSQQEEEEMETDARSSLG 305 Query: 541 VEYSDSEDDS 550 S++E+D+ Sbjct: 306 QSASETEEDT 315 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.133 0.407 Lambda K H 0.267 0.0412 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,390,885 Number of Sequences: 36641 Number of extensions: 1191258 Number of successful extensions: 9295 Number of sequences better than 10.0: 120 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 112 Number of HSP's that attempted gapping in prelim test: 4086 Number of HSP's gapped (non-prelim): 1925 length of query: 559 length of database: 10,336,785 effective HSP length: 102 effective length of query: 457 effective length of database: 6,599,403 effective search space: 3015927171 effective search space used: 3015927171 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 62 (28.5 bits)