BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q8WV92
         (249 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2YMB-A nrPDB                                                          519   e-148
5XMK-A nrPDB                                                           50   1e-06
1T8Q-A nrPDB                                                           31   0.47 
2ZAO-A nrPDB                                                           30   0.66 
4LIK-A nrPDB                                                           29   2.2  
4LCB-A nrPDB                                                           29   2.4  
3IG3-A nrPDB                                                           28   2.7  
5WLC-SG nrPDB                                                          28   4.5  
4J0X-A nrPDB                                                           28   4.8  

>2YMB-A nrPDB
          Length = 257

 Score =  519 bits (1337), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 60
           MAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN
Sbjct: 9   MAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 68

Query: 61  LREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWI 120
           LREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWI
Sbjct: 69  LREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWI 128

Query: 121 EDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSH 180
           EDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSH
Sbjct: 129 EDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSH 188

Query: 181 GVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDI 240
           GVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDI
Sbjct: 189 GVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDI 248

Query: 241 FHKKHTKNI 249
           FHKKHTKNI
Sbjct: 249 FHKKHTKNI 257


>5XMK-A nrPDB
          Length = 437

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 47/73 (64%)

Query: 13 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRA 72
          T    ++++A++LD+ ++Y +A   Y  G+D L+  LK  K+   +  +R K ++Y++RA
Sbjct: 8  TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRA 67

Query: 73 ENIKKYLDQEKED 85
          E +KK+L+ E+ +
Sbjct: 68 EQLKKHLESEEAN 80


>1T8Q-A nrPDB
          Length = 336

 Score = 31.2 bits (69), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 27 SESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIK-KYLDQEKED 85
           E   P   + Y +G D L Q L  TKD+    NL      Y+DR  ++  ++ D+ ++D
Sbjct: 22 PEHTLPAKAMAYAQGADYLEQDLVMTKDD----NLVVLHDHYLDRVTDVADRFPDRARKD 77

Query: 86 GKYH 89
          G+Y+
Sbjct: 78 GRYY 81


>2ZAO-A nrPDB
          Length = 444

 Score = 30.4 bits (67), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 15 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK-GTKDNTKRCNLREKISKYMDRAE 73
          A  +  +A + D    Y +AL  YQ  +   L V+K   + +  + ++R K ++Y+DRAE
Sbjct: 11 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAE 70


>4LIK-A nrPDB
          Length = 392

 Score = 28.9 bits (63), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 39  QEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN-IKKYLDQ 81
           + GI   L ++KG +D  K+ +L EKI  ++ ++ N IKKY ++
Sbjct: 186 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEE 229


>4LCB-A nrPDB
          Length = 367

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 32/69 (46%)

Query: 22 AVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQ 81
          AV  D E    +A+  Y++ ID+L Q++    D+  R    + I +Y  R   ++  L +
Sbjct: 15 AVRADKEGNRDEAITYYKKAIDVLTQIVVLYPDSPTRQAYEQMIDEYKKRVSVLENMLPE 74

Query: 82 EKEDGKYHK 90
            ++    K
Sbjct: 75 TPQEDNSQK 83


>3IG3-A nrPDB
          Length = 627

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 109 EYLNETVTEVWIEDPYIRHTHQLYNF-LRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQS 167
           ++L+E   +  I DP +RHT +     LRF   +IK P  V  IH  +  D  +  V Q+
Sbjct: 451 DFLDEQADQRQISDPDVRHTWKSNCLPLRFWVNVIKNPQFVFDIHKNSITDACLSVVAQT 510


>5WLC-SG nrPDB
          Length = 573

 Score = 27.7 bits (60), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 104 ESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQ 163
           + L R ++ E   E   ED  +++  +    L FCE  I     V   H +T  D G   
Sbjct: 366 QKLLRRWMKENAKEG--EDGEVKYPDESEAPLFFCEGSIDVVSMVDDFHFITGSDNGNIC 423

Query: 164 VQQSRGLQEIEESLRSHGVLLEVQYS--SSIHDREIR 198
           +      + I     +HG+L E  ++  S   D E+R
Sbjct: 424 LWSLAKKKPIFTERIAHGILPEPSFNDISGETDEELR 460


>4J0X-A nrPDB
          Length = 451

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 104 ESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQ 163
           + L R ++ E   E   ED  +++  +    L FCE  I     V   H +T  D G   
Sbjct: 244 QKLLRRWMKENAKEG--EDGEVKYPDESEAPLFFCEGSIDVVSMVDDFHFITGSDNGNIC 301

Query: 164 VQQSRGLQEIEESLRSHGVLLEVQYS--SSIHDREIR 198
           +      + I     +HG+L E  ++  S   D E+R
Sbjct: 302 LWSLAKKKPIFTERIAHGILPEPSFNDISGETDEELR 338


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2YMB-A nrPDB                                                          485   e-138
5XMK-A nrPDB                                                          125   2e-29

Sequences not found previously or not previously below threshold:

2ZAO-A nrPDB                                                           52   2e-07
1T8Q-A nrPDB                                                           32   0.30 
2C4R-L nrPDB                                                           30   1.3  
1YR7-A nrPDB                                                           29   1.6  
4LUS-A nrPDB                                                           29   1.9  
3IG3-A nrPDB                                                           29   2.0  
5MQ0-T nrPDB                                                           28   3.4  
1R19-A nrPDB                                                           28   5.2  
5HY3-A nrPDB                                                           28   5.3  
4B17-A nrPDB                                                           27   8.1  

>2YMB-A nrPDB
          Length = 257

 Score =  485 bits (1248), Expect = e-138,   Method: Composition-based stats.
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 60
           MAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN
Sbjct: 9   MAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 68

Query: 61  LREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWI 120
           LREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWI
Sbjct: 69  LREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWI 128

Query: 121 EDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSH 180
           EDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSH
Sbjct: 129 EDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSH 188

Query: 181 GVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDI 240
           GVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDI
Sbjct: 189 GVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDI 248

Query: 241 FHKKHTKNI 249
           FHKKHTKNI
Sbjct: 249 FHKKHTKNI 257


>5XMK-A nrPDB
          Length = 437

 Score =  125 bits (314), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 47/74 (63%)

Query: 13 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRA 72
          T    ++++A++LD+ ++Y +A   Y  G+D L+  LK  K+   +  +R K ++Y++RA
Sbjct: 8  TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRA 67

Query: 73 ENIKKYLDQEKEDG 86
          E +KK+L+ E+ + 
Sbjct: 68 EQLKKHLESEEANA 81


>2ZAO-A nrPDB
          Length = 444

 Score = 52.3 bits (124), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 14 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGT-KDNTKRCNLREKISKYMDRA 72
           A  +  +A + D    Y +AL  YQ  +   L V+K   + +  + ++R K ++Y+DRA
Sbjct: 10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRA 69


>1T8Q-A nrPDB
          Length = 336

 Score = 31.5 bits (70), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 11/81 (13%)

Query: 32  PQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENI-KKYLDQEKEDGKYH- 89
           P   + Y +G D L Q L  TKD     NL      Y+DR  ++  ++ D+ ++DG+Y+ 
Sbjct: 27  PAKAMAYAQGADYLEQDLVMTKD----DNLVVLHDHYLDRVTDVADRFPDRARKDGRYYA 82

Query: 90  -----KQIKIEENATGFSYES 105
                 +IK  +   GF  E+
Sbjct: 83  IDFTLDEIKSLKFTEGFDIEN 103


>2C4R-L nrPDB
          Length = 517

 Score = 29.6 bits (65), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 19  LKRAVELDSESRYPQALVCYQ--EGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIK 76
           + R +E D  +   +AL   +  EG+ L+++     K       L+  +S  +   E IK
Sbjct: 146 ISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGK---SAEALQWDLSFRLKHWEAIK 202

Query: 77  KYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYI 125
           K  +        H++  +   A        FR+YL + + E+ I++P +
Sbjct: 203 KAAESRPAPFLIHQESNVIVRA--------FRDYLRQDIGEILIDNPKV 243


>1YR7-A nrPDB
          Length = 262

 Score = 29.2 bits (64), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 56  TKRCNLREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREY---LN 112
                L EK ++Y++      K L  EKE+        +  +  G     LF E+   L 
Sbjct: 86  ESYDRLMEKFNEYLN------KILRLEKENDY------VLIDTPGQMETFLFHEFGVRLM 133

Query: 113 ETVTE---VWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLD 158
           E +     V+I DP I      Y F+RF  +LI       TI  L  +D
Sbjct: 134 ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD 182


>4LUS-A nrPDB
          Length = 385

 Score = 28.8 bits (63), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 18  VLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKK 77
           + K  V+  + +R  + +   Q GI L +  L  T D     +++ KI+  +   E  +K
Sbjct: 54  LEKEKVDYLAVARTAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQK 113

Query: 78  YLDQEKEDG-KYHKQIKIEENATGFSYE 104
             +  K  G K    +KI+   T   ++
Sbjct: 114 INEIAKSLGEKACVHVKIDSGMTRIGFQ 141


>3IG3-A nrPDB
          Length = 627

 Score = 28.8 bits (63), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 109 EYLNETVTEVWIEDPYIRHTHQLYNF-LRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQS 167
           ++L+E   +  I DP +RHT +     LRF   +IK P  V  IH  +  D  +  V Q+
Sbjct: 451 DFLDEQADQRQISDPDVRHTWKSNCLPLRFWVNVIKNPQFVFDIHKNSITDACLSVVAQT 510


>5MQ0-T nrPDB
          Length = 877

 Score = 28.1 bits (61), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 26/132 (19%)

Query: 76  KKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIR--------H 127
           K+Y++  KE+G+  KQI+            L+  + ++ VT+  I + YIR         
Sbjct: 41  KRYIEYWKEEGRTDKQIRW-----------LYERFCSQFVTDTSIWEDYIRWESTKEVVE 89

Query: 128 THQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQ 187
           T +++   + C     R C       L+ L+  IEQ      L  I  +L S  + +E +
Sbjct: 90  TSRIFWLFQRCLKSCVRDCDRIC---LSYLELAIEQYD----LAMIRHALASSLMKMERE 142

Query: 188 YSSSIHDREIRF 199
               + D  I+F
Sbjct: 143 MHRKVWDPVIKF 154


>1R19-A nrPDB
          Length = 343

 Score = 27.7 bits (60), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 51  GTKDNTKRCNLREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYE-SLFRE 109
           GT DNT +  +    + Y+D+ ENIK +L        Y  + K+  N T    E      
Sbjct: 105 GTYDNTNK-QITYTFTDYVDKYENIKAHLKLTS----YIDKSKVPNNNTKLDVEYKTALS 159

Query: 110 YLNETVT 116
            +N+T+T
Sbjct: 160 SVNKTIT 166


>5HY3-A nrPDB
          Length = 346

 Score = 27.7 bits (60), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 6   LRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKI 65
           + +D +   + +++ + ++++ E          +     + Q+L    + +   NL E  
Sbjct: 210 IHEDIKKQLSCSLIMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYF 269

Query: 66  SKYMDRAENIKKYLDQEKEDGK 87
           ++  ++ + I + + QE  +G+
Sbjct: 270 TE--NKPKYIIREIHQETINGE 289


>4B17-A nrPDB
          Length = 375

 Score = 26.9 bits (58), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 139 EMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDRE 196
           + L+   C+    +L   + +  E+V  S  L  I+  L  HG+  ++Q     HDRE
Sbjct: 291 QWLVNGWCRETIFNLKLPMKKRYEEV--SHNLAYIQAQLDEHGINAQIQARQLYHDRE 346


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.318    0.137    0.389 

Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,920,064
Number of Sequences: 36641
Number of extensions: 400439
Number of successful extensions: 1128
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 41
length of query: 249
length of database: 10,336,785
effective HSP length: 95
effective length of query: 154
effective length of database: 6,855,890
effective search space: 1055807060
effective search space used: 1055807060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)