BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q8VHW5
         (421 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6QKZ-I nrPDB                                                          828   0.0  
5KK2-E nrPDB                                                          317   6e-87
3JBR-E nrPDB                                                           35   0.071
2CHR-A nrPDB                                                           31   0.98 
5B2G-A nrPDB                                                           30   2.3  
3IC9-A nrPDB                                                           30   2.3  

>6QKZ-I nrPDB
          Length = 423

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/416 (99%), Positives = 416/416 (100%)

Query: 2   ESLKRWNEERGLWCEKGVQVLLTTIGAFAAFGLMTIAISTDYWLYTRALICNTTNLTAGD 61
           ESLKRWNEERGLWCEKGVQVLLTTIGAFAAFGLMTIAISTDYWLYTRALICNTTNLTAGD
Sbjct: 2   ESLKRWNEERGLWCEKGVQVLLTTIGAFAAFGLMTIAISTDYWLYTRALICNTTNLTAGD 61

Query: 62  DGPPHRGGSGSSEKKDPGGLTHSGLWRICCLEGLKRGVCVKINHFPEDTDYDHDSAEYLL 121
           DGPPHRGGSGSSEKKDPGGLTHSGLWRICCLEGLKRGVCVKINHFPEDTDYDHDS+EYLL
Sbjct: 62  DGPPHRGGSGSSEKKDPGGLTHSGLWRICCLEGLKRGVCVKINHFPEDTDYDHDSSEYLL 121

Query: 122 RVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYIS 181
           RVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYIS
Sbjct: 122 RVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYIS 181

Query: 182 ANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSRSDL 241
           ANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSRSDL
Sbjct: 182 ANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSRSDL 241

Query: 242 LKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRGSSEASPSRDASPGGPGGPGFAS 301
           LKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRGSSEASPSRDASPGGPGGPGFAS
Sbjct: 242 LKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRGSSEASPSRDASPGGPGGPGFAS 301

Query: 302 TDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAGF 361
           TDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAGF
Sbjct: 302 TDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAGF 361

Query: 362 LTLHNAFPKEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLSKEAAASNTNTLNRK 417
           LTLHNAFPKEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLSKEAAASNTNTLNRK
Sbjct: 362 LTLHNAFPKEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLSKEAAASNTNTLNRK 417


>5KK2-E nrPDB
          Length = 323

 Score =  317 bits (812), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 171/304 (56%), Positives = 218/304 (71%), Gaps = 29/304 (9%)

Query: 16  EKGVQVLLTTIGAFAAFGLMTIAISTDYWLYTRALICNTTNLTAGDDGPPHRGGSGSSEK 75
           ++GVQ+LLTT+GAFAAF LMTIA+ TDYWLY+R  +C T +++  +           + K
Sbjct: 5   DRGVQMLLTTVGAFAAFSLMTIAVGTDYWLYSRG-VCKTKSVSENE-----------TSK 52

Query: 76  KDPGGLTHSGLWRICCLEGLKRGVCVKINHFPEDTDYDHDSAEYLLRVVRASSIFPILSA 135
           K+   +THSGLWR CCLEG  +G+C +I+HFPED DY+ D+AEY LR VRASSIFPILS 
Sbjct: 53  KNEEVMTHSGLWRTCCLEGNFKGLCKQIDHFPEDADYEADTAEYFLRAVRASSIFPILSV 112

Query: 136 ILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYISANAGEPGPKRDEEK 195
           ILL +GG+C+AAS  YK++ NIIL AGI FV+AGLSNIIG+IVYISANAG+P   + + K
Sbjct: 113 ILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYISANAGDPS--KSDSK 170

Query: 196 KNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSR-SDLLKAGGGAGGSGGS 254
           KN YSYGWSFYFG LSFI+AE++GVLAV+++I+R ++    +R +D L+A          
Sbjct: 171 KNSYSYGWSFYFGALSFIIAEMVGVLAVHMFIDRHKQLRATARATDYLQA---------- 220

Query: 255 GPSAILRLPSYRFRYRRRSRSSSRGSSEASPSRDASPGGPGGPG-FASTDISMYTLSRDP 313
             SAI R+PSYR    +R   SS  S+E S SRDASP G  G     ST+ISMYTLSRDP
Sbjct: 221 --SAITRIPSYR-YRYQRRSRSSSRSTEPSHSRDASPVGVKGFNTLPSTEISMYTLSRDP 277

Query: 314 SKGS 317
            K +
Sbjct: 278 LKAA 281


>3JBR-E nrPDB
          Length = 222

 Score = 34.7 bits (78), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 32/153 (20%)

Query: 83  HSGLWRIC-----------C----LEGLKRGVCVKINHF-PEDTDYDHDSAEYLLRVVRA 126
           H GLWRIC           C    L G K   C    HF P ++    +        + A
Sbjct: 50  HFGLWRICTKRIALGEDRSCGPITLPGEKN--CSYFRHFNPGESSEIFEFTTQKEYSISA 107

Query: 127 SSIFPILSAILLLLGGVCVAASRVYKSKRNIILG-AGILFVAAGLSNIIGVIVYISANAG 185
           ++I  + S   L++G +C  A   ++ KR+ +L  A + +V AGL       +++S    
Sbjct: 108 AAI-SVFSLGFLIMGTIC--ALMAFRKKRDYLLRPASMFYVFAGLC------LFVSLEVM 158

Query: 186 EPGPKRDEEKKN----HYSYGWSFYFGGLSFIL 214
               KR  + ++     Y Y WSF     +F+L
Sbjct: 159 RQSVKRMIDSEDTVWIEYYYSWSFACACAAFVL 191


>2CHR-A nrPDB
          Length = 370

 Score = 31.2 bits (69), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 301 STDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAG 360
           ST  S + L+RD S    +  L + GG      + A   A+G A  GGT  +   G+S  
Sbjct: 249 STLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVA 308

Query: 361 FLTLHNAFP 369
            L L++  P
Sbjct: 309 -LQLYSTVP 316


>5B2G-A nrPDB
          Length = 364

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 84  SGLWRICCLEGLKRGVCVKINHF---PEDTDYDHDSAEYLLRVVRASSIFPILSA----I 136
            GLW  C ++   +  C   +     P+D           L+  RA  I  I+ A    +
Sbjct: 217 EGLWMNCVVQSTGQMQCKVYDSLLALPQD-----------LQAARALVIISIIVAALGVL 265

Query: 137 LLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGV 176
           L ++GG C        +K   ++ AG++F+ AGL  I+ V
Sbjct: 266 LSVVGGKCTNCLEDESAKAKTMIVAGVVFLLAGLMVIVPV 305


>3IC9-A nrPDB
          Length = 492

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 174 IGVIVYISANAGEPGPKRDEEKKNH--YSYGWSFYFGGLSFILAEVIGVLAVN-IYIERS 230
           +GVIV +   +G     +DEE K +   ++   FYF   + +++ +    AV  IY ++S
Sbjct: 196 LGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKS 255

Query: 231 REAHCQSRSDLLKAGG 246
            +   +S   +L A G
Sbjct: 256 GQKTTESFQYVLAATG 271


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6QKZ-I nrPDB                                                          725   0.0  
5KK2-E nrPDB                                                          438   e-123

Sequences not found previously or not previously below threshold:

3JBR-E nrPDB                                                           41   0.001
5B2G-A nrPDB                                                           37   0.017
4UT1-A nrPDB                                                           33   0.21 
2CHR-A nrPDB                                                           31   1.2  
1QHB-A nrPDB                                                           29   3.7  
2X98-A nrPDB                                                           28   5.2  
4N78-F nrPDB                                                           28   5.7  
1NU5-A nrPDB                                                           28   6.5  
1UP8-A nrPDB                                                           28   7.5  
4F4F-A nrPDB                                                           28   7.8  

>6QKZ-I nrPDB
          Length = 423

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/416 (99%), Positives = 416/416 (100%)

Query: 2   ESLKRWNEERGLWCEKGVQVLLTTIGAFAAFGLMTIAISTDYWLYTRALICNTTNLTAGD 61
           ESLKRWNEERGLWCEKGVQVLLTTIGAFAAFGLMTIAISTDYWLYTRALICNTTNLTAGD
Sbjct: 2   ESLKRWNEERGLWCEKGVQVLLTTIGAFAAFGLMTIAISTDYWLYTRALICNTTNLTAGD 61

Query: 62  DGPPHRGGSGSSEKKDPGGLTHSGLWRICCLEGLKRGVCVKINHFPEDTDYDHDSAEYLL 121
           DGPPHRGGSGSSEKKDPGGLTHSGLWRICCLEGLKRGVCVKINHFPEDTDYDHDS+EYLL
Sbjct: 62  DGPPHRGGSGSSEKKDPGGLTHSGLWRICCLEGLKRGVCVKINHFPEDTDYDHDSSEYLL 121

Query: 122 RVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYIS 181
           RVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYIS
Sbjct: 122 RVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYIS 181

Query: 182 ANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSRSDL 241
           ANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSRSDL
Sbjct: 182 ANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSRSDL 241

Query: 242 LKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRGSSEASPSRDASPGGPGGPGFAS 301
           LKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRGSSEASPSRDASPGGPGGPGFAS
Sbjct: 242 LKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRGSSEASPSRDASPGGPGGPGFAS 301

Query: 302 TDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAGF 361
           TDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAGF
Sbjct: 302 TDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAGF 361

Query: 362 LTLHNAFPKEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLSKEAAASNTNTLNRK 417
           LTLHNAFPKEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLSKEAAASNTNTLNRK
Sbjct: 362 LTLHNAFPKEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLSKEAAASNTNTLNRK 417


>5KK2-E nrPDB
          Length = 323

 Score =  438 bits (1127), Expect = e-123,   Method: Composition-based stats.
 Identities = 169/304 (55%), Positives = 216/304 (71%), Gaps = 29/304 (9%)

Query: 16  EKGVQVLLTTIGAFAAFGLMTIAISTDYWLYTRALICNTTNLTAGDDGPPHRGGSGSSEK 75
           ++GVQ+LLTT+GAFAAF LMTIA+ TDYWLY+R  +C T +++  +           + K
Sbjct: 5   DRGVQMLLTTVGAFAAFSLMTIAVGTDYWLYSRG-VCKTKSVSENE-----------TSK 52

Query: 76  KDPGGLTHSGLWRICCLEGLKRGVCVKINHFPEDTDYDHDSAEYLLRVVRASSIFPILSA 135
           K+   +THSGLWR CCLEG  +G+C +I+HFPED DY+ D+AEY LR VRASSIFPILS 
Sbjct: 53  KNEEVMTHSGLWRTCCLEGNFKGLCKQIDHFPEDADYEADTAEYFLRAVRASSIFPILSV 112

Query: 136 ILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYISANAGEPGPKRDEEK 195
           ILL +GG+C+AAS  YK++ NIIL AGI FV+AGLSNIIG+IVYISANAG+P   + + K
Sbjct: 113 ILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYISANAGDPS--KSDSK 170

Query: 196 KNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSR-SDLLKAGGGAGGSGGS 254
           KN YSYGWSFYFG LSFI+AE++GVLAV+++I+R ++    +R +D L+A          
Sbjct: 171 KNSYSYGWSFYFGALSFIIAEMVGVLAVHMFIDRHKQLRATARATDYLQA---------- 220

Query: 255 GPSAILRLPSYRFRYRRRSRSSSRGSSEASPSRDASPGGPGGPG-FASTDISMYTLSRDP 313
             SAI R+PS      +R   SS  S+E S SRDASP G  G     ST+ISMYTLSRDP
Sbjct: 221 --SAITRIPS-YRYRYQRRSRSSSRSTEPSHSRDASPVGVKGFNTLPSTEISMYTLSRDP 277

Query: 314 SKGS 317
            K +
Sbjct: 278 LKAA 281


>3JBR-E nrPDB
          Length = 222

 Score = 41.2 bits (95), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 34/160 (21%)

Query: 83  HSGLWRIC---------------CLEGLKRGVCVKINHF-PEDTD--YDHDSAEYLLRVV 124
           H GLWRIC                L G K   C    HF P ++   ++  + +      
Sbjct: 50  HFGLWRICTKRIALGEDRSCGPITLPGEKN--CSYFRHFNPGESSEIFEFTTQKEYSISA 107

Query: 125 RASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYISANA 184
            A S+F   S   L++G +C A     K +  ++  A + +V AGL       +++S   
Sbjct: 108 AAISVF---SLGFLIMGTIC-ALMAFRKKRDYLLRPASMFYVFAGLC------LFVSLEV 157

Query: 185 GEPGPKRDEEKKNH----YSYGWSFYFGGLSFILAEVIGV 220
                KR  + ++     Y Y WSF     +F+L  + G+
Sbjct: 158 MRQSVKRMIDSEDTVWIEYYYSWSFACACAAFVLLFLGGI 197


>5B2G-A nrPDB
          Length = 364

 Score = 37.0 bits (84), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 18/99 (18%)

Query: 85  GLWRICCLEGLKRGVCVKINHF---PEDTDYDHDSAEYLLRVVRASSIFPI----LSAIL 137
           GLW  C ++   +  C   +     P+D           L+  RA  I  I    L  +L
Sbjct: 218 GLWMNCVVQSTGQMQCKVYDSLLALPQD-----------LQAARALVIISIIVAALGVLL 266

Query: 138 LLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGV 176
            ++GG C        +K   ++ AG++F+ AGL  I+ V
Sbjct: 267 SVVGGKCTNCLEDESAKAKTMIVAGVVFLLAGLMVIVPV 305


>4UT1-A nrPDB
          Length = 673

 Score = 33.1 bits (74), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 18/161 (11%)

Query: 272 RSRSSSRGSSEASPSRDASPGGPGGPGFASTDISMYTLSRDPSKGSVAAGLASAGGGGGG 331
           R+  S  G++  S +      G      +ST  +  + +  P++G++  G + A   G  
Sbjct: 385 RATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTVLPTRGALD-GFSLATANGSA 443

Query: 332 AGVGAYGGAAGAAGGGGTGSERDRGSSAGF-------LTLHNAFPKEAAS---GVTVTVT 381
               +   AAG A   GTG       SAG+          +NA  K  +    G TVT+ 
Sbjct: 444 IAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIA 503

Query: 382 GPP-------AAPAPAPPAPAAPAPGTLSKEAAASNTNTLN 415
           G P       +A  P P  P+  A  T+S     + +  +N
Sbjct: 504 GTPPTSINITSATTPVPYDPSKGASMTISSTTQPAPSGVMN 544


>2CHR-A nrPDB
          Length = 370

 Score = 30.8 bits (68), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 301 STDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAG 360
           ST  S + L+RD S    +  L + GG      + A   A+G A  GGT  +   G+S  
Sbjct: 249 STLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVA 308

Query: 361 FLTLHNAFP 369
            L L++  P
Sbjct: 309 -LQLYSTVP 316


>1QHB-A nrPDB
          Length = 596

 Score = 29.3 bits (64), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 370 KEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLSKEA 406
           + +++G+T  + GP A     PPAP   +P  +++ A
Sbjct: 124 ENSSAGLTFDLEGPDAQSVAMPPAPVLTSPELIAEMA 160


>2X98-A nrPDB
          Length = 431

 Score = 28.5 bits (62), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 294 PGGPGFASTDISMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSER 353
           P G    S+  SM T   DP + +  +  A+       +GV  Y GA G     G G +R
Sbjct: 46  PTGFDAFSSRGSMTTFPDDPYETTTDSAAAAT---AFASGVKTYNGAIGGVQTSGGGFQR 102

Query: 354 -----DRGSSAGFLTLHNAFPKEAASGVTVTVTGPPAAPA 388
                +R S+ G+           A+G+  T     A PA
Sbjct: 103 VDTVLERASAQGY-----------ATGLITTTEATHATPA 131


>4N78-F nrPDB
          Length = 514

 Score = 28.5 bits (62), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 366 NAFPKEAASGVTVTVTGPP----AAPAPAPPAPAAPAPGTLSKEAAASNTNTL 414
           + FP  A S  T     PP    +A APAP  PA   P + + +AAA    TL
Sbjct: 281 SVFPAPAGSAGT-----PPLPATSASAPAPLVPAT-VPSSTAPDAAAGGAQTL 327


>1NU5-A nrPDB
          Length = 370

 Score = 28.5 bits (62), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 305 SMYTLSRDPSKGSVAAGLASAGGGGGGAGVGAYGGAAGAAGGGGTGSERDRGSSAGF 361
           S + L+RD +  + +  L + GG      V A   AAG +  GGT  +   G++A  
Sbjct: 253 SAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAAL 309


>1UP8-A nrPDB
          Length = 598

 Score = 28.1 bits (61), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 370 KEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLSKEA 406
           + +++G+T  + GP A     PPAP   +P  +++ A
Sbjct: 126 ENSSAGLTFDLEGPDAQSIAMPPAPVLTSPELVAEIA 162


>4F4F-A nrPDB
          Length = 468

 Score = 28.1 bits (61), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 11/81 (13%)

Query: 296 GPGFASTDISMYTLSRD-----PSKGSVAAGLASAGGGGGGAGVGAYGGAAGA------A 344
           GP  A  D++M  L+R        +G  A  + +  G  GGA + A+GG           
Sbjct: 111 GPTLAFKDVAMQLLARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFP 170

Query: 345 GGGGTGSERDRGSSAGFLTLH 365
            G  +  ++ + +S+GF  +H
Sbjct: 171 NGRVSPVQQRQMTSSGFSNVH 191


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.310    0.135    0.399 

Lambda     K      H
   0.267   0.0395    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,459,701
Number of Sequences: 36641
Number of extensions: 786595
Number of successful extensions: 5802
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 3320
Number of HSP's gapped (non-prelim): 1362
length of query: 421
length of database: 10,336,785
effective HSP length: 100
effective length of query: 321
effective length of database: 6,672,685
effective search space: 2141931885
effective search space used: 2141931885
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.8 bits)