BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q8TCD5 (201 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4L57-A nrPDB 399 e-112 2JAO-A nrPDB 355 5e-99 1Z4L-A nrPDB 257 3e-69 3BWV-A nrPDB 62 1e-10 3KIC-A nrPDB 31 0.28 5DBN-B nrPDB 29 1.6 2B8N-A nrPDB 28 2.4 5WAB-A nrPDB 27 4.7 4ZE8-A nrPDB 27 7.1 >4L57-A nrPDB Length = 195 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/195 (100%), Positives = 195/195 (100%) Query: 1 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADK 60 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADK Sbjct: 1 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADK 60 Query: 61 VASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHL 120 VASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHL Sbjct: 61 VASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHL 120 Query: 121 GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRL 180 GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRL Sbjct: 121 GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRL 180 Query: 181 LSWSDNWREILDSKR 195 LSWSDNWREILDSKR Sbjct: 181 LSWSDNWREILDSKR 195 >2JAO-A nrPDB Length = 200 Score = 355 bits (912), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 166/197 (84%), Positives = 186/197 (94%) Query: 1 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADK 60 + R VRVLV+MDGVLADFE+GLL+GFRRRFPEEPHVPLEQRRGFLA EQY ALRPDLA+K Sbjct: 3 VKRPVRVLVNMDGVLADFESGLLQGFRRRFPEEPHVPLEQRRGFLANEQYGALRPDLAEK 62 Query: 61 VASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHL 120 VASVYE+PGFFL+LEPIPGALDA+REMND+ DT+VFICT+PLLKY HCVGEKYRWVEQ+L Sbjct: 63 VASVYESPGFFLNLEPIPGALDALREMNDMKDTEVFICTTPLLKYDHCVGEKYRWVEQNL 122 Query: 121 GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRL 180 GP+FVERIILTRDKTVV+GDLLIDDKD ++G EETPSWEHILFTCCHN+HL LPPTRRRL Sbjct: 123 GPEFVERIILTRDKTVVMGDLLIDDKDNIQGLEETPSWEHILFTCCHNQHLALPPTRRRL 182 Query: 181 LSWSDNWREILDSKRGA 197 LSWSDNWR I++SKR + Sbjct: 183 LSWSDNWRGIIESKRAS 199 >1Z4L-A nrPDB Length = 197 Score = 257 bits (656), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 118/194 (60%), Positives = 150/194 (77%) Query: 2 ARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKV 61 R++RVLV+MDGVLADFE G LR FR RFP++P + LE RRGF EQY LRP L++K Sbjct: 2 GRALRVLVNMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKA 61 Query: 62 ASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHLG 121 S++E+ FF +LEP+PGA++AV+EM L +T VFICTSP+ + +C EKY WVE++ G Sbjct: 62 ISIWESKNFFFELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFG 121 Query: 122 PQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRLL 181 P F+E+I+LTRDKTVV DLLIDD+ + G E TPSWEH+LFT CHN+HL L P RRRL Sbjct: 122 PDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLH 181 Query: 182 SWSDNWREILDSKR 195 SW+D+W+ ILDSKR Sbjct: 182 SWADDWKAILDSKR 195 >3BWV-A nrPDB Length = 180 Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 27/186 (14%) Query: 6 RVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVASVY 65 R+ +DMD VLAD +++ R + ++ +E G ++ + + P+ V + Sbjct: 6 RIAIDMDEVLADTLGAVVKAVNER--ADLNIKMESLNG----KKLKHMIPEHEGLVMDIL 59 Query: 66 EAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPL---LKYHHCVGEKYRWVEQH--- 119 + PGFF +L+ +P A + V+++N+ D ++I T+ + +H +KY W+ ++ Sbjct: 60 KEPGFFRNLDVMPHAQEVVKQLNEHYD--IYIATAAMDVPTSFH----DKYEWLLEYFPF 113 Query: 120 LGPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRR 179 L PQ + K ++L D LIDD Q E + I+FT HN V R Sbjct: 114 LDPQ---HFVFCGRKNIILADYLIDDNPK---QLEIFEGKSIMFTASHN---VYEHRFER 164 Query: 180 LLSWSD 185 + W D Sbjct: 165 VSGWRD 170 >3KIC-A nrPDB Length = 736 Score = 31.2 bits (69), Expect = 0.28, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Query: 12 DGVLADF-EAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVASVYEAPGF 70 DG L D+ E L G R + +P VP + A +Q++ R L Y PG Sbjct: 4 DGYLPDWLEDNLSEGIREWWALKPGVPQPK-----ANQQHQDNRRGLVLP-GYKYLGPGN 57 Query: 71 FLDL-EPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGE 111 LD EP+ A A E + D Q+ +P LKY+H E Sbjct: 58 GLDKGEPVNEADAAALEHDKAYDQQLKAGDNPYLKYNHADAE 99 >5DBN-B nrPDB Length = 223 Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 19/48 (39%) Query: 12 DGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLAD 59 DG + + GL PE H+ L+ GFL PDL + Sbjct: 17 DGDIVNLGIGLPTMVANYLPEGIHITLQSENGFLGLGPVTTAHPDLVN 64 >2B8N-A nrPDB Length = 429 Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 99 TSPLLKYHHCVGEKYRWVEQHL----GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEE 154 TS LLK + E+ V +HL G +F ER+ + +VL D+L D D + Sbjct: 157 TSALLKSGASI-EEINTVRKHLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIA---S 212 Query: 155 TPSW 158 P+W Sbjct: 213 GPAW 216 >5WAB-A nrPDB Length = 751 Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 57 LADKVASVYEAPGFFLDLEPIPGALDA 83 LA + V APGF LDLEP L+A Sbjct: 366 LAARGVDVAFAPGFTLDLEPADRTLEA 392 >4ZE8-A nrPDB Length = 499 Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 117 EQHLGPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLV 172 E+ GP+ +++I L + ++ + +++DK TV + +TPS+ F +V Sbjct: 100 ERLWGPEAIKKIPLGKSYSLDFDEPVVEDKYTVTLRTKTPSYLIETFVASWMSRIV 155 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2JAO-A nrPDB 333 3e-92 4L57-A nrPDB 328 7e-91 1Z4L-A nrPDB 318 1e-87 3BWV-A nrPDB 201 1e-52 Sequences not found previously or not previously below threshold: 4I3V-A nrPDB 30 0.66 3DG6-A nrPDB 29 1.1 3KIC-A nrPDB 29 1.3 5FOZ-B nrPDB 29 1.3 4QWV-A nrPDB 29 1.8 4MF9-A nrPDB 28 2.7 5A5L-A nrPDB 28 3.6 2V7S-A nrPDB 27 4.1 6E0F-J nrPDB 27 7.5 4KZY-C nrPDB 27 8.4 3KBB-A nrPDB 26 9.3 1N73-A nrPDB 26 9.6 2YZE-A nrPDB 26 9.9 CONVERGED! >2JAO-A nrPDB Length = 200 Score = 333 bits (854), Expect = 3e-92, Method: Composition-based stats. Identities = 166/197 (84%), Positives = 186/197 (94%) Query: 1 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADK 60 + R VRVLV+MDGVLADFE+GLL+GFRRRFPEEPHVPLEQRRGFLA EQY ALRPDLA+K Sbjct: 3 VKRPVRVLVNMDGVLADFESGLLQGFRRRFPEEPHVPLEQRRGFLANEQYGALRPDLAEK 62 Query: 61 VASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHL 120 VASVYE+PGFFL+LEPIPGALDA+REMND+ DT+VFICT+PLLKY HCVGEKYRWVEQ+L Sbjct: 63 VASVYESPGFFLNLEPIPGALDALREMNDMKDTEVFICTTPLLKYDHCVGEKYRWVEQNL 122 Query: 121 GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRL 180 GP+FVERIILTRDKTVV+GDLLIDDKD ++G EETPSWEHILFTCCHN+HL LPPTRRRL Sbjct: 123 GPEFVERIILTRDKTVVMGDLLIDDKDNIQGLEETPSWEHILFTCCHNQHLALPPTRRRL 182 Query: 181 LSWSDNWREILDSKRGA 197 LSWSDNWR I++SKR + Sbjct: 183 LSWSDNWRGIIESKRAS 199 >4L57-A nrPDB Length = 195 Score = 328 bits (842), Expect = 7e-91, Method: Composition-based stats. Identities = 195/195 (100%), Positives = 195/195 (100%) Query: 1 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADK 60 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADK Sbjct: 1 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADK 60 Query: 61 VASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHL 120 VASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHL Sbjct: 61 VASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHL 120 Query: 121 GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRL 180 GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRL Sbjct: 121 GPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRL 180 Query: 181 LSWSDNWREILDSKR 195 LSWSDNWREILDSKR Sbjct: 181 LSWSDNWREILDSKR 195 >1Z4L-A nrPDB Length = 197 Score = 318 bits (814), Expect = 1e-87, Method: Composition-based stats. Identities = 118/194 (60%), Positives = 150/194 (77%) Query: 2 ARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKV 61 R++RVLV+MDGVLADFE G LR FR RFP++P + LE RRGF EQY LRP L++K Sbjct: 2 GRALRVLVNMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKA 61 Query: 62 ASVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHLG 121 S++E+ FF +LEP+PGA++AV+EM L +T VFICTSP+ + +C EKY WVE++ G Sbjct: 62 ISIWESKNFFFELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFG 121 Query: 122 PQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRLL 181 P F+E+I+LTRDKTVV DLLIDD+ + G E TPSWEH+LFT CHN+HL L P RRRL Sbjct: 122 PDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLH 181 Query: 182 SWSDNWREILDSKR 195 SW+D+W+ ILDSKR Sbjct: 182 SWADDWKAILDSKR 195 >3BWV-A nrPDB Length = 180 Score = 201 bits (512), Expect = 1e-52, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 21/183 (11%) Query: 6 RVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVASVY 65 R+ +DMD VLAD +++ R + ++ +E G ++ + + P+ V + Sbjct: 6 RIAIDMDEVLADTLGAVVKAVNER--ADLNIKMESLNG----KKLKHMIPEHEGLVMDIL 59 Query: 66 EAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPL---LKYHHCVGEKYRWVEQHLGP 122 + PGFF +L+ +P A + V+++N+ D ++I T+ + +H +KY W+ ++ Sbjct: 60 KEPGFFRNLDVMPHAQEVVKQLNEHYD--IYIATAAMDVPTSFH----DKYEWLLEYFPF 113 Query: 123 QFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRLLS 182 + + K ++L D LIDD Q E + I+FT HN V R+ Sbjct: 114 LDPQHFVFCGRKNIILADYLIDDNPK---QLEIFEGKSIMFTASHN---VYEHRFERVSG 167 Query: 183 WSD 185 W D Sbjct: 168 WRD 170 >4I3V-A nrPDB Length = 488 Score = 30.1 bits (66), Expect = 0.66, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 6 RVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLARE-----QYRALRPDLADK 60 RV D VL + ++ R ++ + L F YR ++ +A Sbjct: 377 RVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGL 436 Query: 61 ---VASVYEAPGFFLDLEPIPGALDA 83 +++E PG+ +++ P G D+ Sbjct: 437 KVGTVNIWEVPGYRIEMSPFGGIKDS 462 >3DG6-A nrPDB Length = 367 Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 19 EAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALR 54 + ++R R RF + + ++ RG+ A E RA+R Sbjct: 171 DTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMR 206 >3KIC-A nrPDB Length = 736 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 12 DGVLADF-EAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVASVYEAPGF 70 DG L D+ E L G R + +P VP + + + P Y PG Sbjct: 4 DGYLPDWLEDNLSEGIREWWALKPGVPQPKANQQHQDNRRGLVLPGYK------YLGPGN 57 Query: 71 FLDL-EPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQ 118 LD EP+ A A E + D Q+ +P LKY+H E +++ Sbjct: 58 GLDKGEPVNEADAAALEHDKAYDQQLKAGDNPYLKYNHADAEFQERLQE 106 >5FOZ-B nrPDB Length = 448 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Query: 104 KYHHCVGEKYRWVEQHLGPQFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSW 158 +C +Y + + P+F+ R +L G +I D+D +E P++ Sbjct: 63 SIENCPSNEYSIMYDNKDPRFLIRFLLDD------GRYIIADRDDGEVFDEAPTY 111 >4QWV-A nrPDB Length = 321 Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 17/99 (17%) Query: 3 RSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVA 62 + RVL+ D A F +L+ + E V E G A E+Y+ L+PD+ Sbjct: 138 KPQRVLIVDD---AAFMRMMLKDIITKAGYE--VAGEATNGREAVEKYKELKPDIVTMDI 192 Query: 63 SVYEAPGFFLDLEPIPGALDAVREMNDL-PDTQVFICTS 100 ++ E G +DA++E+ + P+ ++ +C++ Sbjct: 193 TMPEMNG-----------IDAIKEIMKIDPNAKIIVCSA 220 >4MF9-A nrPDB Length = 360 Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 12/105 (11%) Query: 95 VFICTSPLLKYHHCVGEKYRWVEQH---LGPQFVERIILTRDKTVVLGDLLIDDKDTVRG 151 VF+ + ++ H +W++ L P+F + KT + +L K + G Sbjct: 264 VFVGNAHCIQIHTGPVCNLKWLDDWFNVLDPEFNLHL-----KTTGIAELWRVRKPSTDG 318 Query: 152 QEETPSWEHILFTCCHNRHLVLPPTRRRLLSWSDNWREILDSKRG 196 SWE F + L R+ D+WRE+ +S + Sbjct: 319 I--VTSWEA--FDPDGELIVQLFGARKPGEPERDDWRELAESFKA 359 >5A5L-A nrPDB Length = 364 Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 143 IDDKDTVRGQEETPSWEHILFTCC 166 I D D V EE S E +LF C Sbjct: 290 ITDPDKVYEAEELASGETVLFAAC 313 >2V7S-A nrPDB Length = 215 Score = 27.4 bits (59), Expect = 4.1, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 14 VLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLARE 48 ++AD + + G +F ++P++ R G L + Sbjct: 72 IIADRVSAAIPGQTWKFDDDPNIQQSDRNGALCDK 106 >6E0F-J nrPDB Length = 226 Score = 26.6 bits (57), Expect = 7.5, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Query: 28 RRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVASVYEAPGFFLDLEPIPGALDAVREM 87 RR P + Q RGF A L + + A+V EA F + GA+ + M Sbjct: 3 RRLPTSCFLKRSQFRGFAATSPLLNLDYQMY-RTATVREAAPQFSGQAVVNGAIKDI-NM 60 Query: 88 NDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHLG 121 ND + + P+ C E + ++H Sbjct: 61 NDYKGKYIVLFFYPMDFTFVCPTEIIAFSDRHAD 94 >4KZY-C nrPDB Length = 278 Score = 26.6 bits (57), Expect = 8.4, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 8/119 (6%) Query: 41 RRGFLARE--QYRALRPDLADKVASVY-----EAPGFFLDLEPIPGALDAVREMNDLPDT 93 RRG+ + + +R + + SV G + P+P L + ++D T Sbjct: 151 RRGYWGNKIGKPHTVRCKVTGRCGSVLVRLIPAPRGTGIISAPVPKKLLLMAGIDDCY-T 209 Query: 94 QVFICTSPLLKYHHCVGEKYRWVEQHLGPQFVERIILTRDKTVVLGDLLIDDKDTVRGQ 152 CT+ L + + +L P + + T+ D L+ V Q Sbjct: 210 SAGGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQ 268 >3KBB-A nrPDB Length = 216 Score = 26.2 bits (56), Expect = 9.3, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 12/91 (13%) Query: 7 VLVDMDGVLADFEAGLLRGFRR-------RFPEEPH---VPLEQRRGFLAREQYRALRPD 56 V+ DMDGVL D E +RR + E+ H + + +R G + ++ Sbjct: 4 VIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKDS 63 Query: 57 LADKVASVYEAPGFFLD--LEPIPGALDAVR 85 L + V+E L+ PG +A+ Sbjct: 64 LENFKKRVHEEKKRVFSELLKENPGVREALE 94 >1N73-A nrPDB Length = 119 Score = 26.2 bits (56), Expect = 9.6, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%) Query: 1 MARSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRAL 53 +++ +RV VD+D L + R R +E ++ LE+ ++A ++ Sbjct: 56 VSQILRVEVDIDVALRACKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERF 108 >2YZE-A nrPDB Length = 302 Score = 26.2 bits (56), Expect = 9.9, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 7 VLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVASVYE 66 V VD D V A LL+ F E H Q+ + P++ + S+ Sbjct: 195 VEVDFDAVYASVRGLLLKAF-----AETHSLALQQTMYEMGRAVIETHPEIDEIKMSLPN 249 Query: 67 APGFFLDLEPI 77 F +DL+P Sbjct: 250 KHHFLVDLQPF 260 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.132 0.370 Lambda K H 0.267 0.0406 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,115,206 Number of Sequences: 36641 Number of extensions: 315665 Number of successful extensions: 1107 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 1085 Number of HSP's gapped (non-prelim): 37 length of query: 201 length of database: 10,336,785 effective HSP length: 92 effective length of query: 109 effective length of database: 6,965,813 effective search space: 759273617 effective search space used: 759273617 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 56 (26.2 bits)