BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q8TBC4
(463 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1YOV-B nrPDB 922 0.0
2NVU-B nrPDB 905 0.0
1Y8X-B nrPDB 191 4e-49
3KYC-B nrPDB 168 5e-42
3KYD-B nrPDB 167 1e-41
1ZFN-A nrPDB 65 5e-11
1JWB-B nrPDB 59 5e-09
6CWZ-C nrPDB 57 1e-08
3VH2-A nrPDB 57 2e-08
3T7E-A nrPDB 57 2e-08
3H5A-A nrPDB 56 3e-08
5FF5-A nrPDB 55 5e-08
4RDI-A nrPDB 54 1e-07
4P22-A nrPDB 53 4e-07
1TT5-A nrPDB 50 3e-06
5IAA-A nrPDB 35 0.059
2PX9-A nrPDB 33 0.18
3PVZ-A nrPDB 31 1.1
2Q1T-A nrPDB 31 1.2
1UKV-G nrPDB 30 2.1
5C53-B nrPDB 30 2.5
3IKL-A nrPDB 30 2.7
3KYB-A nrPDB 30 3.3
1SC7-A nrPDB 29 4.1
3DKB-A nrPDB 28 7.0
5C52-B nrPDB 28 8.6
1PJ5-A nrPDB 28 8.7
5D1C-A nrPDB 28 9.4
>1YOV-B nrPDB
Length = 444
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/443 (99%), Positives = 442/443 (99%)
Query: 21 KMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGL 80
MAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGL
Sbjct: 2 SMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGL 61
Query: 81 GCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 140
GCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN
Sbjct: 62 GCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 121
Query: 141 VVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLID 200
VVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLID
Sbjct: 122 VVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLID 181
Query: 201 GGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPK 260
GGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPK
Sbjct: 182 GGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPK 241
Query: 261 EQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVI 320
EQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVI
Sbjct: 242 EQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVI 301
Query: 321 AAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSA 380
AAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSA
Sbjct: 302 AAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSA 361
Query: 381 KLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVD 440
KLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVD
Sbjct: 362 KLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVD 421
Query: 441 GQELAVADVTTPQTVLFKLHFTS 463
GQELAVADVTTPQTVLFKLHFTS
Sbjct: 422 GQELAVADVTTPQTVLFKLHFTS 444
>2NVU-B nrPDB
Length = 805
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/433 (99%), Positives = 431/433 (99%)
Query: 31 TGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLAL 90
DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLAL
Sbjct: 373 AADWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLAL 432
Query: 91 SGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD 150
SGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD
Sbjct: 433 SGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD 492
Query: 151 FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNA 210
FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNA
Sbjct: 493 FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNA 552
Query: 211 RVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPL 270
RVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPL
Sbjct: 553 RVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPL 612
Query: 271 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 330
DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK
Sbjct: 613 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 672
Query: 331 IATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLT 390
IATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLT
Sbjct: 673 IATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLT 732
Query: 391 NSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT 450
NSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT
Sbjct: 733 NSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT 792
Query: 451 TPQTVLFKLHFTS 463
TPQTVLFKLHFTS
Sbjct: 793 TPQTVLFKLHFTS 805
>1Y8X-B nrPDB
Length = 98
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/97 (97%), Positives = 96/97 (98%)
Query: 367 CSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTR 426
SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLY+QSVTSIEERTR
Sbjct: 2 SSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTR 61
Query: 427 PNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 463
PNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
Sbjct: 62 PNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 98
>3KYC-B nrPDB
Length = 660
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 19/236 (8%)
Query: 71 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 130
+VLV+GAGG+GCELLKNL L+GF I +ID+DTIDVSNLNRQFLF+ K +GR KA+VA E
Sbjct: 39 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKE 98
Query: 131 FLNDRVPNCNVVPHFNKIQ--DFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 188
+ P N+V + + I D+N F+RQF +++ LD+ AR +N M +
Sbjct: 99 SVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL-------- 150
Query: 189 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 248
++ VPLI+ GT G+ G I G+T C EC + P Q FP CTI + P P H
Sbjct: 151 ----AADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGCTIRNTPSEPIH 204
Query: 249 CIEYVRML--QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 302
CI + + L Q E+ + V D DPE W ++ RA N G R++
Sbjct: 205 CIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARARACNEDGDIKRIS 259
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 23/231 (9%)
Query: 239 IASMPRLPEHCIEYVRMLQWPKEQPFGEGVPL--DGDDPEHIQWIFQKSLERASQYNIRG 296
+ S RL IE +R+ K G+G L D DDP + ++ + R +++
Sbjct: 335 VKSYARLFSKSIETLRVHLAEK----GDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNM 390
Query: 297 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF---NDVDGLYT 353
+ + + IIPA+A+TNAVIA + E KI + + N L
Sbjct: 391 KSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLV 450
Query: 354 YTFEAERKENCPACSQLPQ-----NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEG 408
NC C+ P+ N+ LQ+ + M +P + +G
Sbjct: 451 PCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKI----VKEKFAMVAPDVQIE-DG 505
Query: 409 KNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKL 459
K L ++S E T N K L E G+ +G L D T+L +
Sbjct: 506 KGTIL----ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINI 552
>3KYD-B nrPDB
Length = 551
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 19/236 (8%)
Query: 71 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 130
+VLV+GAGG+GCELLKNL L+GF I +ID+DTIDVSNLNRQFLF+ K +GR KA+VA E
Sbjct: 21 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKE 80
Query: 131 FLNDRVPNCNVVPHFNKIQ--DFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 188
+ P N+V + + I D+N F+RQF +++ LD+ AR +N M +
Sbjct: 81 SVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL-------- 132
Query: 189 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 248
++ VPLI+ GT G+ G I G+T C EC + P Q FP CTI + P P H
Sbjct: 133 ----AADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGCTIRNTPSEPIH 186
Query: 249 CIEYVRML--QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 302
CI + + L Q E+ + V D DPE W ++ RA N G R++
Sbjct: 187 CIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARARACNEDGDIKRIS 241
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 23/231 (9%)
Query: 239 IASMPRLPEHCIEYVRMLQWPKEQPFGEGVPL--DGDDPEHIQWIFQKSLERASQYNIRG 296
+ S RL IE +R+ K G+G L D DDP + ++ + R +++
Sbjct: 317 VKSYARLFSKSIETLRVHLAEK----GDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNM 372
Query: 297 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF---NDVDGLYT 353
+ + + IIPA+A+TNAVIA + E KI + + N L
Sbjct: 373 KSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLV 432
Query: 354 YTFEAERKENCPACSQLPQ-----NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEG 408
NC C+ P+ N+ LQ+ + M +P + +G
Sbjct: 433 PCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKI----VKEKFAMVAPDVQIE-DG 487
Query: 409 KNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKL 459
K L ++S E T N K L E G+ +G L D T+L +
Sbjct: 488 KGTIL----ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINI 534
>1ZFN-A nrPDB
Length = 253
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 123
Q LLD+ +VL+IG GGLG LA +G + + D D + +SNL RQ LF +DI RP
Sbjct: 26 QKLLDS-QVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRP 84
Query: 124 KAEVAAEFLNDRVPNCNVVPHFNKI--QDFNDTFYRQFHIIVCGLDSIIARRWINGMLIS 181
K++V+ + L P+ + ++ + D R ++ C D++ R+ IN ++
Sbjct: 85 KSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDC-TDNMATRQEINAACVA 143
Query: 182 LLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGM-TACIECTLELYP 229
L PLI GF G V+ P C C L+P
Sbjct: 144 L------------NTPLITASAVGFGGQLMVLTPPWEQGCYRC---LWP 177
>1JWB-B nrPDB
Length = 249
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 123
Q L +VL++G GGLGC + LA +G + ++D DT+ +SNL RQ L +G+P
Sbjct: 26 QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQP 85
Query: 124 KAEVAAEFLNDRVPNCNVVP 143
K E A + L P+ + P
Sbjct: 86 KVESARDALTRINPHIAITP 105
>6CWZ-C nrPDB
Length = 346
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 123
Q L +VL++G GLG E+ KNL L+G + + ++D + + + QFL R +GR
Sbjct: 31 QKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRN 90
Query: 124 KAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHII---VCGLDSII 170
+AE + E + P +V I+ ++F+ QF + C D I+
Sbjct: 91 RAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIV 140
>3VH2-A nrPDB
Length = 616
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 66 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKA 125
++ KVL++GAG LGC + + L G R+I +D T+ SN RQ L+ +D G+PKA
Sbjct: 324 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKA 383
Query: 126 EVAAEFLNDRVP 137
E+AA L P
Sbjct: 384 ELAAASLKRIFP 395
>3T7E-A nrPDB
Length = 344
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 66 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKA 125
++ KVL++GAG LGC + + L G R+I +D T+ SN RQ L+ +D G+PKA
Sbjct: 35 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKA 94
Query: 126 EVAAEFLNDRVP 137
E+AA L P
Sbjct: 95 ELAAASLKRIFP 106
>3H5A-A nrPDB
Length = 358
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 36 GRWNHVKKFLERSGPFTH-PDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR 94
G +N+ + S F H + + +Q L KV+++G GG+G + LA SG
Sbjct: 81 GEYNNSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIG 140
Query: 95 QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFND 153
+I +ID D I+ +NL RQ LF D+G+ K EV L R +V I D+ D
Sbjct: 141 EIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTD 199
>5FF5-A nrPDB
Length = 381
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 123
Q L KV + G GG G LA+SG + +ID D +++SN+NRQ L+R D+G+
Sbjct: 127 QERLKQSKVAIFGMGGWGTWCALQLAMSGIGTLRLIDGDDVELSNINRQVLYRTDDVGKN 186
Query: 124 KAEVAAEFLNDRVPNCNVVPHF 145
K + A + + N +V F
Sbjct: 187 KVDAAKDTILAYNENVHVETFF 208
>4RDI-A nrPDB
Length = 288
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 61 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 120
++LQ D + V+G GG+G + LA +G I +IDMD + V+N NRQ ++
Sbjct: 43 KALQLFADA-HICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV 101
Query: 121 GRPKAEVAAEFLNDRVPNCNV 141
G KAEV AE + P C V
Sbjct: 102 GLAKAEVMAERIRQINPECRV 122
>4P22-A nrPDB
Length = 446
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 67 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAE 126
L T VLV G GLG E+ KN+ L G + + + D T ++L+ QF R +DIG+ +AE
Sbjct: 77 LQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAE 136
Query: 127 VA----AEFLNDRVP 137
V+ AE LN VP
Sbjct: 137 VSQPRLAE-LNSYVP 150
>1TT5-A nrPDB
Length = 531
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 123
Q L++ V +I A G E+LKNL L G +ID + + + F + IG+
Sbjct: 27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86
Query: 124 KAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVC 164
+AE A EF LN V V + D + +F+ +F ++V
Sbjct: 87 RAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVA 130
>5IAA-A nrPDB
Length = 290
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 32/160 (20%)
Query: 88 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 147
L G ++ + D D ++++N+NR F F+P G K + A L + P+ H
Sbjct: 36 LTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 94
Query: 148 I------QDFNDTFY-------RQFHIIVCGLDSIIARRWINGMLISLLN--YEDGVLDP 192
I Q F D + +++ +D+ AR IN L E GV +
Sbjct: 95 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE- 153
Query: 193 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 232
G+ ++I+PG +AC C PP V
Sbjct: 154 -----------NAVSGHIQLIIPGESACFACA----PPLV 178
>2PX9-A nrPDB
Length = 217
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 231 QVNFPMCTIASMPRLPEHCIEYVRML--QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLER 288
Q FP CTI + P P HCI + + L Q E+ + V D DPE W ++ R
Sbjct: 2 QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEAR 60
Query: 289 ASQYNIRGVTYRLT 302
A N G R++
Sbjct: 61 ARASNEDGDIKRIS 74
>3PVZ-A nrPDB
Length = 399
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 39 NHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVI-GAGGLGCELLKNLALSGFRQIH 97
N + + R H D + + LQ ++ + LV+ GAG +G + K + +++H
Sbjct: 5 NSILSLIGRDTELFHQDINANEKELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLH 64
Query: 98 VIDMDTIDVSNLNR 111
V+D+ ++ L R
Sbjct: 65 VVDISENNMVELVR 78
>2Q1T-A nrPDB
Length = 377
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 66 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVID 100
L +T ++V GAG +G L+K L G Q+HV+D
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVD 64
>1UKV-G nrPDB
Length = 453
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 72 VLVIGAGGLGCELLKNLALSGFRQIHVIDMD-------TIDVSNLNRQFLFRPKDIGRPK 124
V+V+G G C L L++ G + +H+ D ++ +S L +F P K
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNP----ISK 69
Query: 125 AEVAAEFLNDRVPNCNVVPHF 145
E ++F DR N +++P F
Sbjct: 70 EERESKFGKDRDWNVDLIPKF 90
>5C53-B nrPDB
Length = 903
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 31/116 (26%)
Query: 16 ELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVI 75
ELL E+ + GG HVK E G HP+ S E + LL+ C+
Sbjct: 31 ELLTERSSPKGG------------HVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHF 78
Query: 76 -------------------GAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQ 112
G G LG EL KNLA + + V V L+ +
Sbjct: 79 LSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHK 134
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 31/116 (26%)
Query: 16 ELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVI 75
ELL E+ + GG HVK E G HP+ S E + LL+ C+
Sbjct: 483 ELLTERSSPKGG------------HVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHF 530
Query: 76 -------------------GAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQ 112
G G LG EL KNLA + + V V L+ +
Sbjct: 531 LSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHK 586
>3IKL-A nrPDB
Length = 459
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 31/116 (26%)
Query: 16 ELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVI 75
ELL E+ + GG HVK E G HP+ S E + LL+ C+
Sbjct: 31 ELLTERSSPKGG------------HVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHF 78
Query: 76 -------------------GAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQ 112
G G LG EL KNLA + + V V L+ +
Sbjct: 79 LSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHK 134
>3KYB-A nrPDB
Length = 390
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 67 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVID 100
+ + K+L++GAG G + + LA G Q+H+ID
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEKG-HQVHIID 33
>1SC7-A nrPDB
Length = 592
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 43 KFLERSGPFTHPDFEPSTESLQFLLD 68
KFLE GP P +EP E+++F D
Sbjct: 45 KFLEHKGPVFAPPYEPLPENVKFYYD 70
>3DKB-A nrPDB
Length = 390
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 9 KKRRRIEELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68
K R ++E L +++ G C DT +W W+++ K P + ++ +
Sbjct: 159 KFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKMASTDTPMARSGLQYNSLEEIHIFV 218
Query: 69 TCKVL 73
C +L
Sbjct: 219 LCNIL 223
>5C52-B nrPDB
Length = 485
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 16 ELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVI 75
ELL E+ + GG HVK E G HP+ S E LL+ C+
Sbjct: 31 ELLTERSSPKGG------------HVKSHAELEGNGEHPEAPGSGEGSLALLEICQRRHF 78
Query: 76 -------------------GAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQ 112
G G LG EL KNLA + + V V L+ +
Sbjct: 79 LSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHK 134
>1PJ5-A nrPDB
Length = 830
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 66 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDV 106
+ T ++++IGAG +G L L G+ I V+D +++
Sbjct: 1 MASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNM 41
>5D1C-A nrPDB
Length = 389
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 17 LLAEKMAVDGGCGDTGDWEGRWNHVKK 43
+ A + +DG C +W G W+H KK
Sbjct: 120 ITAAQCLIDGMCKVAINWSGGWHHAKK 146
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1YOV-B nrPDB 776 0.0
2NVU-B nrPDB 749 0.0
3KYD-B nrPDB 315 3e-86
3KYC-B nrPDB 312 2e-85
1ZFN-A nrPDB 184 8e-47
3H5A-A nrPDB 169 3e-42
1Y8X-B nrPDB 163 2e-40
1JWB-B nrPDB 136 1e-32
6CWZ-C nrPDB 132 3e-31
1TT5-A nrPDB 124 1e-28
5FF5-A nrPDB 115 4e-26
4RDI-A nrPDB 108 5e-24
3VH2-A nrPDB 99 3e-21
3T7E-A nrPDB 99 3e-21
4P22-A nrPDB 96 3e-20
Sequences not found previously or not previously below threshold:
2PX9-A nrPDB 120 2e-27
4W5V-B nrPDB 109 3e-24
5FQ2-B nrPDB 109 3e-24
5IAA-A nrPDB 66 3e-11
4K28-A nrPDB 41 8e-04
3ZHS-A nrPDB 37 0.014
5ILO-A nrPDB 36 0.030
3PVZ-A nrPDB 35 0.085
2HAE-A nrPDB 33 0.26
3BO5-A nrPDB 32 0.45
3K6J-A nrPDB 32 0.61
5XWD-A nrPDB 32 0.74
4JJI-A nrPDB 32 0.82
4GGP-A nrPDB 31 1.00
5CEE-A nrPDB 31 1.1
1Z7L-A nrPDB 31 1.5
2OOE-A nrPDB 30 3.0
2V3B-A nrPDB 29 3.5
2ADD-A nrPDB 29 3.9
>1YOV-B nrPDB
Length = 444
Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats.
Identities = 442/443 (99%), Positives = 442/443 (99%)
Query: 21 KMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGL 80
MAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGL
Sbjct: 2 SMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGL 61
Query: 81 GCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 140
GCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN
Sbjct: 62 GCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 121
Query: 141 VVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLID 200
VVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLID
Sbjct: 122 VVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLID 181
Query: 201 GGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPK 260
GGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPK
Sbjct: 182 GGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPK 241
Query: 261 EQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVI 320
EQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVI
Sbjct: 242 EQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVI 301
Query: 321 AAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSA 380
AAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSA
Sbjct: 302 AAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSA 361
Query: 381 KLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVD 440
KLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVD
Sbjct: 362 KLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVD 421
Query: 441 GQELAVADVTTPQTVLFKLHFTS 463
GQELAVADVTTPQTVLFKLHFTS
Sbjct: 422 GQELAVADVTTPQTVLFKLHFTS 444
>2NVU-B nrPDB
Length = 805
Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats.
Identities = 431/432 (99%), Positives = 431/432 (99%)
Query: 32 GDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALS 91
DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALS
Sbjct: 374 ADWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALS 433
Query: 92 GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF 151
GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF
Sbjct: 434 GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF 493
Query: 152 NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAR 211
NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAR
Sbjct: 494 NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAR 553
Query: 212 VILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLD 271
VILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLD
Sbjct: 554 VILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLD 613
Query: 272 GDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKI 331
GDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKI
Sbjct: 614 GDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKI 673
Query: 332 ATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTN 391
ATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTN
Sbjct: 674 ATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTN 733
Query: 392 SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTT 451
SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTT
Sbjct: 734 SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTT 793
Query: 452 PQTVLFKLHFTS 463
PQTVLFKLHFTS
Sbjct: 794 PQTVLFKLHFTS 805
>3KYD-B nrPDB
Length = 551
Score = 315 bits (806), Expect = 3e-86, Method: Composition-based stats.
Identities = 100/247 (40%), Positives = 137/247 (55%), Gaps = 19/247 (7%)
Query: 60 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 119
L + +VLV+GAGG+GCELLKNL L+GF I +ID+DTIDVSNLNRQFLF+ K
Sbjct: 10 PRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKH 69
Query: 120 IGRPKAEVAAEFLNDRVPNCNVVPHFNKIQ--DFNDTFYRQFHIIVCGLDSIIARRWING 177
+GR KA+VA E + P N+V + + I D+N F+RQF +++ LD+ AR +N
Sbjct: 70 VGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNR 129
Query: 178 MLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 237
M ++ + VPLI+ GT G+ G I G+T C EC + P Q FP C
Sbjct: 130 MCLA------------ADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGC 175
Query: 238 TIASMPRLPEHCIEYVRML--QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIR 295
TI + P P HCI + + L Q E+ + V D DPE W ++ RA N
Sbjct: 176 TIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARARACNED 234
Query: 296 GVTYRLT 302
G R++
Sbjct: 235 GDIKRIS 241
Score = 220 bits (560), Expect = 1e-57, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 17/207 (8%)
Query: 261 EQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVI 320
E+ G + D DDP + ++ + R +++ + + + IIPA+A+TNAVI
Sbjct: 337 EKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVI 396
Query: 321 AAVCATEVFKIATSAYIPLNNYLVF---NDVDGLYTYTFEAERKENCPACSQLPQ----- 372
A + E KI + + N L NC C+ P+
Sbjct: 397 AGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRL 456
Query: 373 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKT 432
N+ LQ+ + M +P + +GK L ++S E T N K
Sbjct: 457 NVHKVTVLTLQDKI----VKEKFAMVAPDVQIE-DGKGTIL----ISSEEGETEANNHKK 507
Query: 433 LKELGLVDGQELAVADVTTPQTVLFKL 459
L E G+ +G L D T+L +
Sbjct: 508 LSEFGIRNGSRLQADDFLQDYTLLINI 534
>3KYC-B nrPDB
Length = 660
Score = 312 bits (800), Expect = 2e-85, Method: Composition-based stats.
Identities = 100/247 (40%), Positives = 137/247 (55%), Gaps = 19/247 (7%)
Query: 60 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 119
L + +VLV+GAGG+GCELLKNL L+GF I +ID+DTIDVSNLNRQFLF+ K
Sbjct: 28 PRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKH 87
Query: 120 IGRPKAEVAAEFLNDRVPNCNVVPHFNKIQ--DFNDTFYRQFHIIVCGLDSIIARRWING 177
+GR KA+VA E + P N+V + + I D+N F+RQF +++ LD+ AR +N
Sbjct: 88 VGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNR 147
Query: 178 MLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 237
M ++ + VPLI+ GT G+ G I G+T C EC + P Q FP C
Sbjct: 148 MCLA------------ADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGC 193
Query: 238 TIASMPRLPEHCIEYVRML--QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIR 295
TI + P P HCI + + L Q E+ + V D DPE W ++ RA N
Sbjct: 194 TIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARARACNED 252
Query: 296 GVTYRLT 302
G R++
Sbjct: 253 GDIKRIS 259
Score = 218 bits (555), Expect = 4e-57, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 17/207 (8%)
Query: 261 EQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVI 320
E+ G + D DDP + ++ + R +++ + + + IIPA+A+TNAVI
Sbjct: 355 EKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVI 414
Query: 321 AAVCATEVFKIATSAYIPLNNYLVF---NDVDGLYTYTFEAERKENCPACSQLPQ----- 372
A + E KI + + N L NC C+ P+
Sbjct: 415 AGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRL 474
Query: 373 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKT 432
N+ LQ+ + M +P + +GK L ++S E T N K
Sbjct: 475 NVHKVTVLTLQDKI----VKEKFAMVAPDVQIE-DGKGTIL----ISSEEGETEANNHKK 525
Query: 433 LKELGLVDGQELAVADVTTPQTVLFKL 459
L E G+ +G L D T+L +
Sbjct: 526 LSEFGIRNGSRLQADDFLQDYTLLINI 552
>1ZFN-A nrPDB
Length = 253
Score = 184 bits (466), Expect = 8e-47, Method: Composition-based stats.
Identities = 72/269 (26%), Positives = 110/269 (40%), Gaps = 38/269 (14%)
Query: 40 HVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVI 99
+ + F+ S D Q L +VL+IG GGLG LA +G + +
Sbjct: 4 NDRDFMRYSRQILLDDIALDG---QQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLA 60
Query: 100 DMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI--QDFNDTFYR 157
D D + +SNL RQ LF +DI RPK++V+ + L P+ + ++ + D R
Sbjct: 61 DDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVAR 120
Query: 158 QFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGM 217
++ C D++ R+ IN ++L PLI GF G V+ P
Sbjct: 121 ADVVLDC-TDNMATRQEINAACVAL------------NTPLITASAVGFGGQLMVLTPPW 167
Query: 218 -TACIECTLELYP----PQVNFPMCTIASMPRLPEHCIEYVRMLQWPK-----EQPFGEG 267
C C L+P P+ N C A + + ++ L+ K E P GE
Sbjct: 168 EQGCYRC---LWPDNQEPERN---CRTAGVVGPVVGVMGTLQALEAIKLLSGIETPAGEL 221
Query: 268 VPLDGDDPEHIQWIFQKSLERASQYNIRG 296
DG + QW +L RAS + G
Sbjct: 222 RLFDG---KSSQWR-SLALRRASGCPVCG 246
>3H5A-A nrPDB
Length = 358
Score = 169 bits (427), Expect = 3e-42, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 22/195 (11%)
Query: 36 GRWNHVKKFLERSGPFTH-PDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR 94
G +N+ + S F H + + +Q L KV+++G GG+G + LA SG
Sbjct: 81 GEYNNSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIG 140
Query: 95 QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFND- 153
+I +ID D I+ +NL RQ LF D+G+ K EV L R +V I D+ D
Sbjct: 141 EIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDL 200
Query: 154 -TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARV 212
+V W+N + + P I+ G+ + V
Sbjct: 201 HKVPEADIWVVSADHPFNLINWVNKYCV------------RANQPYINA---GYVNDIAV 245
Query: 213 I----LPGMTACIEC 223
+PG T C EC
Sbjct: 246 FGPLYVPGKTGCYEC 260
>1Y8X-B nrPDB
Length = 98
Score = 163 bits (411), Expect = 2e-40, Method: Composition-based stats.
Identities = 95/97 (97%), Positives = 96/97 (98%)
Query: 367 CSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTR 426
SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLY+QSVTSIEERTR
Sbjct: 2 SSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTR 61
Query: 427 PNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 463
PNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
Sbjct: 62 PNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 98
>1JWB-B nrPDB
Length = 249
Score = 136 bits (343), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 42 KKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM 101
++ L + F+ Q L +VL++G GGLGC + LA +G + ++D
Sbjct: 7 QEMLRYNRQIILRGFDFDG---QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 63
Query: 102 DTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDT--FYRQF 159
DT+ +SNL RQ L +G+PK E A + L P+ + P + D
Sbjct: 64 DTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHD 123
Query: 160 HIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVIL-PGMT 218
++ C D++ R +N + + VPL+ G +G V
Sbjct: 124 LVLDC-TDNVAVRNQLNAGCFA------------AKVPLVSGAAIRMEGQITVFTYQDGE 170
Query: 219 ACIECTLELY 228
C C L+
Sbjct: 171 PCYRCLSRLF 180
>6CWZ-C nrPDB
Length = 346
Score = 132 bits (332), Expect = 3e-31, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 123
Q L +VL++G GLG E+ KNL L+G + + ++D + + + QFL R +GR
Sbjct: 31 QKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRN 90
Query: 124 KAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHII---VCGLDSIIARRWI 175
+AE + E + P +V I+ ++F+ QF + C D I+ I
Sbjct: 91 RAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQI 145
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 301 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 350
L + V+ +A AV+ + A E+ K + P NN+ F+ + G
Sbjct: 287 LPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKG 336
>1TT5-A nrPDB
Length = 531
Score = 124 bits (310), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 123
Q L++ V +I A G E+LKNL L G +ID + + + F + IG+
Sbjct: 27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86
Query: 124 KAEVAAEFLNDRVPNC---NVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 180
+AE A EFL + + V + D + +F+ +F ++V L
Sbjct: 87 RAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVAT------------QLP 134
Query: 181 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILP 215
+ + +S +PL+ T G G R+I+
Sbjct: 135 ESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIK 169
>2PX9-A nrPDB
Length = 217
Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 230 PQVNFPMCTIASMPRLPEHCIEYVRML--QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLE 287
Q FP CTI + P P HCI + + L Q E+ + V D DPE W ++
Sbjct: 1 TQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEA 59
Query: 288 RASQYNIRGVTYRLT 302
RA N G R++
Sbjct: 60 RARASNEDGDIKRIS 74
>5FF5-A nrPDB
Length = 381
Score = 115 bits (288), Expect = 4e-26, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 60 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 119
Q L KV + G GG G LA+SG + +ID D +++SN+NRQ L+R D
Sbjct: 123 PFVYQERLKQSKVAIFGMGGWGTWCALQLAMSGIGTLRLIDGDDVELSNINRQVLYRTDD 182
Query: 120 IGRPKAEVAAEFLNDRVPNCNVVPHFN 146
+G+ K + A + + N +V F
Sbjct: 183 VGKNKVDAAKDTILAYNENVHVETFFE 209
>4W5V-B nrPDB
Length = 122
Score = 109 bits (272), Expect = 3e-24, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 367 CSQLPQ-----NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSI 421
+ P+ N+ LQ+ + M +P + +GK L ++S
Sbjct: 5 SASKPEVTVRLNVHKVTVLTLQDKI----VKEKFAMVAPDVQIE-DGKGTIL----ISSE 55
Query: 422 EERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKL 459
E T N K L E G+ +G L D T+L +
Sbjct: 56 EGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINI 93
>5FQ2-B nrPDB
Length = 105
Score = 109 bits (272), Expect = 3e-24, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 369 QLPQ-----NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEE 423
P+ N+ LQ+ + M +P + +GK L ++S E
Sbjct: 4 SKPEVTVRLNVHKVTVLTLQDKI----VKEKFAMVAPDVQIE-DGKGTIL----ISSEEG 54
Query: 424 RTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKL 459
T N K L E G+ +G L D T+L +
Sbjct: 55 ETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINI 90
>4RDI-A nrPDB
Length = 288
Score = 108 bits (269), Expect = 5e-24, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 61 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 120
++LQ D + V+G GG+G + LA +G I +IDMD + V+N NRQ ++
Sbjct: 43 KALQLFAD-AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV 101
Query: 121 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQ--FHIIVCGLDSIIARRWINGM 178
G KAEV AE + P C V + + N Y + ++ +DS+ + +
Sbjct: 102 GLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAY 161
Query: 179 LISLLNYEDGVLDPSSIVPLIDGGTEG 205
+ +PL+ G G
Sbjct: 162 C------------RRNKIPLVTTGGAG 176
>3VH2-A nrPDB
Length = 616
Score = 99.5 bits (246), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 27/201 (13%)
Query: 60 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 119
+ ++ KVL++GAG LGC + + L G R+I +D T+ SN RQ L+ +D
Sbjct: 318 PDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFED 377
Query: 120 IGRPKAEVAAEFLNDRVPNCNVVPHFNKI--------------QDFN--DTFYRQFHIIV 163
G+PKAE+AA L P + I +DF+ ++ II
Sbjct: 378 CGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIF 437
Query: 164 CGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIEC 223
+DS +R W+ +L ++ N L+ GN C C
Sbjct: 438 LLVDSRESR-WLPSLLSNIENKTVINAALGFDSYLVMR-----HGNRDEQSSKQLGCYFC 491
Query: 224 TLELYP----PQVNF-PMCTI 239
+ P MCT+
Sbjct: 492 HDVVAPTDSLTDRTLDQMCTV 512
>3T7E-A nrPDB
Length = 344
Score = 99.5 bits (246), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 27/201 (13%)
Query: 60 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 119
+ ++ KVL++GAG LGC + + L G R+I +D T+ SN RQ L+ +D
Sbjct: 29 PDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFED 88
Query: 120 IGRPKAEVAAEFLNDRVPNCNVVPHFNKI--------------QDFN--DTFYRQFHIIV 163
G+PKAE+AA L P + I +DF+ ++ II
Sbjct: 89 CGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIF 148
Query: 164 CGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIEC 223
+DS +R W+ +L ++ N L+ GN C C
Sbjct: 149 LLVDSRESR-WLPSLLSNIENKTVINAALGFDSYLVMR-----HGNRDEQSSKQLGCYFC 202
Query: 224 TLELYP----PQVNF-PMCTI 239
+ P MCT+
Sbjct: 203 HDVVAPTDSLTDRTLDQMCTV 223
>4P22-A nrPDB
Length = 446
Score = 96.4 bits (238), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 65 FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 124
L T VLV G GLG E+ KN+ L G + + + D T ++L+ QF R +DIG+ +
Sbjct: 75 KRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNR 134
Query: 125 AEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 163
AEV+ L + V + + + F F ++V
Sbjct: 135 AEVSQPRLAELNSYVPVTAYTGPLV---EDFLSGFQVVV 170
>5IAA-A nrPDB
Length = 290
Score = 65.9 bits (159), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 32/180 (17%)
Query: 65 FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 124
+ T V ++G GG+G + L G ++ + D D ++++N+NR F+P G K
Sbjct: 13 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNR-LFFQPHQAGLSK 71
Query: 125 AEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF---------------HIIVCGLDSI 169
+ A L + P+ H I ++ F +++ +D+
Sbjct: 72 VQAAEHTLRNINPDVLFEVHNYNIT--TVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF 129
Query: 170 IARRWINGML--ISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLEL 227
AR IN + E GV + + G+ ++I+PG +AC C L
Sbjct: 130 EARMTINTACNELGQTWMESGVSENAVS------------GHIQLIIPGESACFACAPPL 177
>4K28-A nrPDB
Length = 269
Score = 41.3 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 31/135 (22%)
Query: 71 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 130
+ LVIG GG+G + LA +G I + D T + E
Sbjct: 127 RALVIGCGGVGSAIAYALAEAGIASITLCDPSTA-------------------RMGAVCE 167
Query: 131 FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRW--INGMLISLLNYEDG 188
L + P V F+ ++DF+ + + R ++ L++ L +
Sbjct: 168 LLGNGFPGLTVSTQFSGLEDFD-------LVANASPVGMGTRAELPLSAALLATLQPDTL 220
Query: 189 VLD---PSSIVPLID 200
V D I PL++
Sbjct: 221 VADVVTSPEITPLLN 235
>3ZHS-A nrPDB
Length = 868
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 62/306 (20%), Positives = 100/306 (32%), Gaps = 41/306 (13%)
Query: 182 LLNYEDGVLDPSSIVPLIDGGTEGFKGN---ARVILPGMTACIECTLELYPPQVNFPMCT 238
L E+G + S+VPL+ G F G A + + ++ N T
Sbjct: 265 LDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT 324
Query: 239 IASM-PRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLE---------- 287
A R E+C + +M+ P ++GDDPE W+ + +++
Sbjct: 325 TAPTDSRSSEYCTDVAKMIGAPI-------FHVNGDDPEACAWVARLAVDFRQAFKKDVV 377
Query: 288 ------RASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNN 341
R +N G +TQ + +I + A L +
Sbjct: 378 IDMLCYRRRGHNE-GDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRD 436
Query: 342 Y-----LVFNDVDGLYTYTFEAERKENCPACSQLPQNIQF-SPSAKLQEVLD-YLTNSAS 394
Y VFN+V L + E E E+ A Q+P + A LQ + D +L
Sbjct: 437 YQGQLERVFNEVRELEKH--EIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEG 494
Query: 395 LQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLV--DGQELAVADVTTP 452
P + LE + Y + L + E LV GQ+ T
Sbjct: 495 FT-VHPRVRPVLEKRREMAYEGRIDWAFAELLA-LGSLIAEGKLVRLSGQDTQRGTFTQR 552
Query: 453 QTVLFK 458
V+
Sbjct: 553 HAVIVD 558
>5ILO-A nrPDB
Length = 271
Score = 36.3 bits (82), Expect = 0.030, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 72 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDT-------IDVSNLNRQFLFRPKDIGRPK 124
V+ GAGG+G ++ K L +G ++ +ID+ + ++ + + D+ K
Sbjct: 19 VVTGGAGGIGLQVSKQLLAAGAAKVAIIDLQDNLEEFVKLRAAHPTQSVMIIKMDVANKK 78
Query: 125 -AEVAAEFLNDRVPNCNVVPHFNKIQDFND 153
E E + N ++V + I + D
Sbjct: 79 GVEATYEEIAKTFGNIDIVVNVAGIFNDKD 108
>3PVZ-A nrPDB
Length = 399
Score = 34.7 bits (78), Expect = 0.085, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 39 NHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVI-GAGGLGCELLKNLALSGFRQIH 97
N + + R H D + + LQ ++ + LV+ GAG +G + K + +++H
Sbjct: 5 NSILSLIGRDTELFHQDINANEKELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLH 64
Query: 98 VIDMDTIDVSNLNRQF 113
V+D+ ++ L R
Sbjct: 65 VVDISENNMVELVRDI 80
>2HAE-A nrPDB
Length = 386
Score = 33.2 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 19/119 (15%)
Query: 61 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 120
+ + ++ KV+V G G G ++K L G + + +D I N P+
Sbjct: 174 KLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEN-------DPETC 226
Query: 121 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQ-DFNDTFYRQFHIIVCGLDSIIARRWINGM 178
LN+ + + ++ D I +I+ WI M
Sbjct: 227 -----------LNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKM 274
>3BO5-A nrPDB
Length = 290
Score = 32.4 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 229 PPQVNFPMCTIASMPRLPEHC 249
P Q+ FP C P LP C
Sbjct: 54 PTQITFPGCICVKTPCLPGTC 74
>3K6J-A nrPDB
Length = 460
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 65 FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 124
D V +IG G +G + L+G V+ + L + ++ + +
Sbjct: 50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQEL--EVMYARE---KSF 104
Query: 125 AEVAAEFLNDRVPNCNVVPHFNKI 148
+ + + N + F+K+
Sbjct: 105 KRLNDKRIEKINANLKITSDFHKL 128
>5XWD-A nrPDB
Length = 651
Score = 31.7 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 218 TACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWP 259
+ CI+C E P +N I R P++CI+ + P
Sbjct: 553 SECIQCHPECLPQAMN-----ITCTGRGPDNCIQCAHYIDGP 589
>4JJI-A nrPDB
Length = 378
Score = 31.7 bits (70), Expect = 0.82, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 70 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR---QFLFRPKDIGRPKAE 126
V + G G +G + + +G +I ID+D+ + PKD +P E
Sbjct: 195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQE 254
Query: 127 VAAE 130
V +
Sbjct: 255 VIVD 258
>4GGP-A nrPDB
Length = 401
Score = 31.3 bits (69), Expect = 1.00, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 50 PFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNL 109
PFT E S E V V+G + K L+ G + I + +
Sbjct: 180 PFTGELKEISAEPANDEEAAATVKVMGGEDWERWI-KQLSKEGLLEEGCITLAYSYIGPE 238
Query: 110 NRQFLFRPKDIGRPK--AEVAAEFLNDRVPNCNVVPHFNK 147
Q L+R IG+ K E A LN P+ NK
Sbjct: 239 ATQALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSVNK 278
>5CEE-A nrPDB
Length = 413
Score = 31.3 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 61 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVID 100
+ ++ ++ +V++ GAG G + K L L + ++D
Sbjct: 199 KVVKKSIEDVQVVINGAGSAGMAIAKMLLLLKVNNVVLVD 238
>1Z7L-A nrPDB
Length = 276
Score = 30.5 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 231 QVNFPMCTIASMPRLPEHCIEYVR 254
+ + P+CT+ + P EH +++ R
Sbjct: 11 EKSIPICTLKNFPNAIEHTLQWAR 34
>2OOE-A nrPDB
Length = 530
Score = 29.7 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 232 VNFPMCTIASMPRLPEHCIEYVRMLQWPKEQP 263
N P + P+ + + + +QW K P
Sbjct: 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244
>2V3B-A nrPDB
Length = 384
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 55 DFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSG 92
D E Q +VL++GAG +GCE +L+ G
Sbjct: 131 DLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGG 168
>2ADD-A nrPDB
Length = 543
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 258 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 317
W Q F + +D + + IQW + +E Q + L G V I +A++
Sbjct: 307 WAGLQSFPRALWIDRNGKQLIQW-PVEEIEELRQNQVNLQNKNLKPGSVLE-IHGIAASQ 364
Query: 318 AVIAAVCATEVFK 330
A + E K
Sbjct: 365 ADVTISFKLEGLK 377
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.126 0.337
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,794,528
Number of Sequences: 36641
Number of extensions: 660813
Number of successful extensions: 2062
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1959
Number of HSP's gapped (non-prelim): 80
length of query: 463
length of database: 10,336,785
effective HSP length: 100
effective length of query: 363
effective length of database: 6,672,685
effective search space: 2422184655
effective search space used: 2422184655
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 61 (28.2 bits)