BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q8T045
         (411 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5F86-A nrPDB                                                          813   0.0  
5L0V-A nrPDB                                                          421   e-118
2H5G-A nrPDB                                                           31   1.0  
2YF0-A nrPDB                                                           31   1.3  
2PX0-A nrPDB                                                           29   4.4  
2W45-A nrPDB                                                           28   6.7  

>5F86-A nrPDB
          Length = 402

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/391 (99%), Positives = 388/391 (99%)

Query: 21  EDDGLCSADQKSCAQSEPDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVL 80
           EDDGLCSADQKSCAQSEPDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVL
Sbjct: 9   EDDGLCSADQKSCAQSEPDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVL 68

Query: 81  KRDLAPYKSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATL 140
           KRDLAPYKSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATL
Sbjct: 69  KRDLAPYKSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATL 128

Query: 141 PDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI 200
           PDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI
Sbjct: 129 PDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI 188

Query: 201 GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPELVEAQYTKNQG 260
           GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPELVEAQYTKNQG
Sbjct: 189 GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPELVEAQYTKNQG 248

Query: 261 WKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFF 320
           WKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFF
Sbjct: 249 WKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFF 308

Query: 321 YDQLKPWVHYVPLKSYPSQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYW 380
           YDQLKPWVHYVPLKSYPSQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYW
Sbjct: 309 YDQLKPWVHYVPLKSYPSQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYW 368

Query: 381 RKLLKRYVKLLQYEVKPEDQLIYIGPKKDEL 411
           RKLLKRYVKLLQYEVKPEDQLIYIGPK   L
Sbjct: 369 RKLLKRYVKLLQYEVKPEDQLIYIGPKARAL 399


>5L0V-A nrPDB
          Length = 357

 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/356 (58%), Positives = 255/356 (71%), Gaps = 15/356 (4%)

Query: 53  QIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESSAR--YGTKYKIY 110
           QI ++  +Y+PCSS     +CSC+  V++ DL P++  G++R+M+    R   GT Y+I 
Sbjct: 10  QINRSLENYEPCSS----QNCSCYHGVIEEDLTPFRG-GISRKMMAEVVRRKLGTHYQIT 64

Query: 111 GHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTRDYPQLNAAWGNAAGGPVFSF 170
            +RLYR+ +CMFP+RC G+EHF+L ++  LPDM+++IN RDYPQ+   W   A  PVFSF
Sbjct: 65  KNRLYRENDCMFPSRCSGVEHFILEVIGRLPDMEMVINVRDYPQV-PKWMEPAI-PVFSF 122

Query: 171 SKTKEYRDIMYPAWTFWAGGPAT-KLHPRGIGRWDQMREKLEKRAAAIPWSQKRSLGFFR 229
           SKT EY DIMYPAWTFW GGPA   ++P G+GRWD  RE L + AA  PW +K S  +FR
Sbjct: 123 SKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLVRSAAQWPWKKKNSTAYFR 182

Query: 230 GSRTSDERDSLILLSRRNPELVEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFN 289
           GSRTS ERD LILLSR+NP+LV+A+YTKNQ WKS KDTL  PAA +V   DHCKYKYLFN
Sbjct: 183 GSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHLVDHCKYKYLFN 242

Query: 290 FRGVAASFRLKHLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFF 349
           FRGVAASFR KHLFLC SLVFHVGDEW EFFY QLKPWVHY+P+K+       + +L F 
Sbjct: 243 FRGVAASFRFKHLFLCGSLVFHVGDEWLEFFYPQLKPWVHYIPVKT--DLSNVQELLQFV 300

Query: 350 KKNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEV---KPEDQLI 402
           K ND +AQEIA+RG  FI  HL+M DI CYW  LL  Y K L Y V   K  DQ+I
Sbjct: 301 KANDDVAQEIAERGSQFIRNHLQMDDITCYWENLLSEYSKFLSYNVTRRKGYDQII 356


>2H5G-A nrPDB
          Length = 463

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 113 RLYRDANCMFPARCEGIEHFLL--PLVATLPDMDLIINTRDYPQLNAAWG-NAAGGPVFS 169
           RL RD+ C +PA C  +E  L+   L+ T P  D II+     Q+    G   A    FS
Sbjct: 267 RLVRDSKCEYPAACNALETLLIHRDLLRT-PLFDQIIDMLRVEQVKIHAGPKFASYLTFS 325

Query: 170 FSKTKEYR 177
            S+ K  R
Sbjct: 326 PSEVKSLR 333


>2YF0-A nrPDB
          Length = 512

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 26/123 (21%)

Query: 53  QIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESSARYGTKYKI--- 109
           Q+  AN DYK C + P             R+L  Y     ++ +I  S+++ +K +    
Sbjct: 145 QLSDANRDYKICETYP-------------REL--YVPRIASKPIIVGSSKFRSKGRFPVL 189

Query: 110 -YGHRLYRDANCM-------FPARCEGIEHFLLPLVATLPDMDLIINTRDYPQLNAAWGN 161
            Y H+    A C        F ARC   EH L  +    P    +      P+LNA    
Sbjct: 190 SYYHQDKEAAICRCSQPLSGFSARCLEDEHLLQAISKANPVNRYMYVMDTRPKLNAMANR 249

Query: 162 AAG 164
           AAG
Sbjct: 250 AAG 252


>2PX0-A nrPDB
          Length = 296

 Score = 28.9 bits (63), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 271 PAADEVSFEDHCKYKYLFNFRGVAASFRLKHLFLC------KSLVFHVGDEWQEFFYDQL 324
           P+AD+     H KY  LF   G   +  L  L         K + F   D ++    +QL
Sbjct: 94  PSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQL 153

Query: 325 KPWVHYV--PLKSYPSQQEYEHILSFFKKNDALAQEIAQRGY 364
           K +   +  PL+   +++E++     F + D +  + A R +
Sbjct: 154 KTYAELLQAPLEVCYTKEEFQQAKELFSEYDHVFVDTAGRNF 195


>2W45-A nrPDB
          Length = 470

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 278 FEDHCKYKYLFN---FRGVAASFRLKHLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLK 334
           +E  C++KYLF+   F  +  S+   +   CK         +  F     +P V YVP  
Sbjct: 224 YEIKCRFKYLFSKSEFDPIYPSYTALYKRPCKR-------SFIRFINSIARPTVEYVPDG 276

Query: 335 SYPSQQEY 342
             PS+ +Y
Sbjct: 277 RLPSEGDY 284


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5F86-A nrPDB                                                          776   0.0  
5L0V-A nrPDB                                                          606   e-174

Sequences not found previously or not previously below threshold:

2H5G-A nrPDB                                                           31   1.0  
5ZHZ-A nrPDB                                                           30   2.4  
5KYM-A nrPDB                                                           30   2.5  
4PDK-A nrPDB                                                           28   5.7  
5MG3-D nrPDB                                                           28   7.9  
1FEP-A nrPDB                                                           28   8.1  


CONVERGED!
>5F86-A nrPDB
          Length = 402

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/391 (99%), Positives = 388/391 (99%)

Query: 21  EDDGLCSADQKSCAQSEPDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVL 80
           EDDGLCSADQKSCAQSEPDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVL
Sbjct: 9   EDDGLCSADQKSCAQSEPDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVL 68

Query: 81  KRDLAPYKSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATL 140
           KRDLAPYKSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATL
Sbjct: 69  KRDLAPYKSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATL 128

Query: 141 PDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI 200
           PDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI
Sbjct: 129 PDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI 188

Query: 201 GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPELVEAQYTKNQG 260
           GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPELVEAQYTKNQG
Sbjct: 189 GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPELVEAQYTKNQG 248

Query: 261 WKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFF 320
           WKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFF
Sbjct: 249 WKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFF 308

Query: 321 YDQLKPWVHYVPLKSYPSQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYW 380
           YDQLKPWVHYVPLKSYPSQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYW
Sbjct: 309 YDQLKPWVHYVPLKSYPSQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYW 368

Query: 381 RKLLKRYVKLLQYEVKPEDQLIYIGPKKDEL 411
           RKLLKRYVKLLQYEVKPEDQLIYIGPK   L
Sbjct: 369 RKLLKRYVKLLQYEVKPEDQLIYIGPKARAL 399


>5L0V-A nrPDB
          Length = 357

 Score =  606 bits (1562), Expect = e-174,   Method: Composition-based stats.
 Identities = 208/356 (58%), Positives = 255/356 (71%), Gaps = 15/356 (4%)

Query: 53  QIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESSAR--YGTKYKIY 110
           QI ++  +Y+PCSS     +CSC+  V++ DL P++  G++R+M+    R   GT Y+I 
Sbjct: 10  QINRSLENYEPCSS----QNCSCYHGVIEEDLTPFRG-GISRKMMAEVVRRKLGTHYQIT 64

Query: 111 GHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTRDYPQLNAAWGNAAGGPVFSF 170
            +RLYR+ +CMFP+RC G+EHF+L ++  LPDM+++IN RDYPQ+   W   A  PVFSF
Sbjct: 65  KNRLYRENDCMFPSRCSGVEHFILEVIGRLPDMEMVINVRDYPQV-PKWMEPAI-PVFSF 122

Query: 171 SKTKEYRDIMYPAWTFWAGGPAT-KLHPRGIGRWDQMREKLEKRAAAIPWSQKRSLGFFR 229
           SKT EY DIMYPAWTFW GGPA   ++P G+GRWD  RE L + AA  PW +K S  +FR
Sbjct: 123 SKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLVRSAAQWPWKKKNSTAYFR 182

Query: 230 GSRTSDERDSLILLSRRNPELVEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFN 289
           GSRTS ERD LILLSR+NP+LV+A+YTKNQ WKS KDTL  PAA +V   DHCKYKYLFN
Sbjct: 183 GSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHLVDHCKYKYLFN 242

Query: 290 FRGVAASFRLKHLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFF 349
           FRGVAASFR KHLFLC SLVFHVGDEW EFFY QLKPWVHY+P+K+       + +L F 
Sbjct: 243 FRGVAASFRFKHLFLCGSLVFHVGDEWLEFFYPQLKPWVHYIPVKT--DLSNVQELLQFV 300

Query: 350 KKNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEV---KPEDQLI 402
           K ND +AQEIA+RG  FI  HL+M DI CYW  LL  Y K L Y V   K  DQ+I
Sbjct: 301 KANDDVAQEIAERGSQFIRNHLQMDDITCYWENLLSEYSKFLSYNVTRRKGYDQII 356


>2H5G-A nrPDB
          Length = 463

 Score = 30.7 bits (68), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 113 RLYRDANCMFPARCEGIEHFLLPL-VATLPDMDLIINTRDYPQLNAAWGNAAGGPVFSFS 171
           RL RD+ C +PA C  +E  L+   +   P  D II+     Q+    G        +FS
Sbjct: 267 RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAG-PKFASYLTFS 325

Query: 172 KTK------EYRDI 179
            ++      EY D+
Sbjct: 326 PSEVKSLRTEYGDL 339


>5ZHZ-A nrPDB
          Length = 258

 Score = 29.6 bits (65), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 230 GSRTSDERDSLILLSRRNPELVEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFN 289
           GS  S   D L        ++V+      Q WK+PK   DA A    +   +    YL N
Sbjct: 4   GSHVSPT-DPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62

Query: 290 F 290
            
Sbjct: 63  L 63


>5KYM-A nrPDB
          Length = 247

 Score = 29.6 bits (65), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 127 EGIEHFLLPLVATLPDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTF 186
            G+   + P     PD  ++   +D   +        G PV   S    Y  I    WTF
Sbjct: 147 NGVTFIVFPEGTRSPDGKVLSFKKDSLMIAVK----TGVPVLPVSIWGTYHLIPKGRWTF 202

Query: 187 WAGGPATKLH----PRGIGRWDQMR---EKLEKRAAA 216
             G    K+H    P+G    +++R   E++ KR   
Sbjct: 203 TPGKVFLKIHEPVDPKGFSSEEELRKYVEEVVKRGVE 239


>4PDK-A nrPDB
          Length = 279

 Score = 28.4 bits (62), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 293 VAASFRLKHLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFFKK- 351
           +A +F      L + L FH G++     ++ LK     V    + + Q  E  + F+++ 
Sbjct: 177 IAKTFNFYDYMLFQRLAFHSGNQIYGLIFNGLKKLYDRVGSYYFSNPQARELAMEFYRQL 236

Query: 352 --------NDALAQEIAQRG--YDFIWEHLRM 373
                    + L Q I Q G     IW  ++M
Sbjct: 237 LAVCQSGEREHLPQVIRQYGIASGHIWNQMKM 268


>5MG3-D nrPDB
          Length = 622

 Score = 28.0 bits (61), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 204 DQMREKLEKRAAAIPW---SQKRSLGF---FRGSRTSDERDSLILLSRRNPELVEAQYTK 257
           D +R  L  R   IP+    ++ + G    FR ++  DE  ++  LS+R+P+LV +    
Sbjct: 159 DSLRSDL--REKGIPYTTVRKENNYGLSITFRDAKARDE--AIAYLSKRHPDLVISSQGS 214

Query: 258 NQGWKSPKD 266
           NQ      D
Sbjct: 215 NQLRAVMSD 223


>1FEP-A nrPDB
          Length = 724

 Score = 28.0 bits (61), Expect = 8.1,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 29/104 (27%)

Query: 44  DEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHA----------------NVLKRDLAPY 87
           DEFSF++   ++K  AD    +   Q +    +A                 V++ D AP 
Sbjct: 185 DEFSFRLYGNLDKTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPL 244

Query: 88  KS----TGVTR---------QMIESSARYGTKYKIYGHRLYRDA 118
           +S     G +R         Q   S +   +KY    +RLYR  
Sbjct: 245 QSLELEAGYSRQGNLYAGDTQNTNSDSYTRSKYGDETNRLYRQN 288


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.314    0.140    0.435 

Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,509,713
Number of Sequences: 36641
Number of extensions: 829698
Number of successful extensions: 1701
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 23
length of query: 411
length of database: 10,336,785
effective HSP length: 99
effective length of query: 312
effective length of database: 6,709,326
effective search space: 2093309712
effective search space used: 2093309712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 60 (27.7 bits)