BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q8NIG3 (103 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6GEN-C nrPDB 198 4e-52 3W99-B nrPDB 162 2e-41 1AOI-B nrPDB 162 4e-41 4XYI-B nrPDB 160 1e-40 6A5L-b nrPDB 160 1e-40 2YFV-B nrPDB 143 2e-35 2L5A-A nrPDB 125 4e-30 2LY8-A nrPDB 119 3e-28 1KU5-A nrPDB 33 0.022 6MZC-R nrPDB 33 0.030 6MZC-I nrPDB 31 0.12 6F3T-E nrPDB 30 0.22 5FUR-L nrPDB 30 0.27 3B0C-T nrPDB 29 0.39 6MZM-K nrPDB 29 0.46 1BFM-A nrPDB 29 0.56 1B67-A nrPDB 29 0.58 2I5P-O nrPDB 28 0.61 3B0B-B nrPDB 28 1.0 1TAF-B nrPDB 28 1.1 3VH5-A nrPDB 28 1.3 4WV4-B nrPDB 27 1.4 2ZNM-A nrPDB 27 1.6 1H3O-B nrPDB 27 2.1 4IA5-A nrPDB 26 3.7 5ZBX-A nrPDB 26 3.8 1O7D-D nrPDB 26 4.8 2WJV-A nrPDB 25 5.8 5O2N-A nrPDB 25 6.1 5G49-A nrPDB 25 6.5 6EJ5-A nrPDB 25 6.9 1TAF-A nrPDB 25 7.4 >6GEN-C nrPDB Length = 103 Score = 198 bits (504), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 102/103 (99%), Positives = 103/103 (100%) Query: 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLK 60 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLK Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLK 60 Query: 61 SFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103 SFLESVIRD+VTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG Sbjct: 61 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103 >3W99-B nrPDB Length = 105 Score = 162 bits (411), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 80/87 (91%), Positives = 84/87 (96%) Query: 17 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEH 76 KRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEH Sbjct: 19 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH 78 Query: 77 AKRKTVTSLDVVYALKRQGRTLYGFGG 103 AKRKTVT++DVVYALKRQGRTLYGFGG Sbjct: 79 AKRKTVTAMDVVYALKRQGRTLYGFGG 105 >1AOI-B nrPDB Length = 87 Score = 162 bits (409), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 80/87 (91%), Positives = 84/87 (96%) Query: 17 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEH 76 KRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEH Sbjct: 1 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH 60 Query: 77 AKRKTVTSLDVVYALKRQGRTLYGFGG 103 AKRKTVT++DVVYALKRQGRTLYGFGG Sbjct: 61 AKRKTVTAMDVVYALKRQGRTLYGFGG 87 >4XYI-B nrPDB Length = 103 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/86 (91%), Positives = 83/86 (96%) Query: 18 RHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHA 77 RHRKILRDNIQGITKPAIRRLARRGGVKRIS L+Y+E RAVLK FLE+VIRDAVTYTEHA Sbjct: 18 RHRKILRDNIQGITKPAIRRLARRGGVKRISALVYDETRAVLKLFLENVIRDAVTYTEHA 77 Query: 78 KRKTVTSLDVVYALKRQGRTLYGFGG 103 KRKTVTSLDVVYALKRQGRT+YGFGG Sbjct: 78 KRKTVTSLDVVYALKRQGRTIYGFGG 103 >6A5L-b nrPDB Length = 106 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/86 (91%), Positives = 83/86 (96%) Query: 18 RHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHA 77 RHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA Sbjct: 21 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 80 Query: 78 KRKTVTSLDVVYALKRQGRTLYGFGG 103 KRKTVT++DVVYALKRQGRTLYGFGG Sbjct: 81 KRKTVTAMDVVYALKRQGRTLYGFGG 106 >2YFV-B nrPDB Length = 74 Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/74 (97%), Positives = 73/74 (98%) Query: 25 DNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTS 84 DNIQGITKPAIRRLARRGGVKRISGLIYEEVR VLK+FLESVIRDAVTYTEHAKRKTVTS Sbjct: 1 DNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTS 60 Query: 85 LDVVYALKRQGRTL 98 LDVVYALKRQGRTL Sbjct: 61 LDVVYALKRQGRTL 74 >2L5A-A nrPDB Length = 235 Score = 125 bits (314), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 61/63 (96%), Positives = 63/63 (100%) Query: 41 RGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYG 100 +GGVKRISGLIYEEVRAVLKSFLESVIRD+VTYTEHAKRKTVTSLDVVYALKRQGRTLYG Sbjct: 173 KGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYG 232 Query: 101 FGG 103 FGG Sbjct: 233 FGG 235 >2LY8-A nrPDB Length = 121 Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 59/61 (96%), Positives = 60/61 (98%) Query: 43 GVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 102 G KRISGLIYEEVRAVLKSFLESVIRD+VTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG Sbjct: 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 120 Query: 103 G 103 G Sbjct: 121 G 121 >1KU5-A nrPDB Length = 70 Score = 33.5 bits (75), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Query: 35 IRRLARRGGVKRISGLIYEEVRAVLKSFLES----VIRDAVTYTEHAKRKTVTSLDVVYA 90 + RL R+ G +R+S E+ VL +LE + + AV + HA RKTV D+ A Sbjct: 12 VDRLIRKAGAERVS----EQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLA 67 Query: 91 LK 92 +K Sbjct: 68 IK 69 >6MZC-R nrPDB Length = 161 Score = 33.1 bits (74), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 25 DNIQGITKPAIRRLARR-GGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVT 83 +N Q +TK ++ L R +++ + E + + F+ESV+ A H K T+ Sbjct: 53 ENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLE 112 Query: 84 SLDVVYALKRQGRT-LYGFGG 103 DV L+RQ + GFG Sbjct: 113 VKDVQLHLERQWNMWIPGFGS 133 >6MZC-I nrPDB Length = 677 Score = 30.8 bits (68), Expect = 0.12, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 63 LESVIRDAVTYTEHAKRKTVTSLDVVYALK-RQGRTLYGF 101 ++ + +DA+ + KR+ +T+ D+ YALK + LYGF Sbjct: 47 IKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 86 >6F3T-E nrPDB Length = 94 Score = 30.0 bits (66), Expect = 0.22, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 63 LESVIRDAVTYTEHAKRKTVTSLDVVYALK-RQGRTLYGFGG 103 ++ + +DA+ + KR+ +T+ D+ YALK + LYGF Sbjct: 43 IKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHA 84 >5FUR-L nrPDB Length = 310 Score = 30.0 bits (66), Expect = 0.27, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 53 EEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 E + +L+S++ + R A +Y EH R T D+V L G Sbjct: 59 ETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMG 101 >3B0C-T nrPDB Length = 111 Score = 29.3 bits (64), Expect = 0.39, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 52 YEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 Y+ V + + + + D Y++HA RKTV DV ++RQG Sbjct: 30 YKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 >6MZM-K nrPDB Length = 310 Score = 28.9 bits (63), Expect = 0.46, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 53 EEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 E + +L+S++ + R A +Y EH R T D+V L G Sbjct: 59 ETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMG 101 >1BFM-A nrPDB Length = 69 Score = 28.9 bits (63), Expect = 0.56, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%) Query: 37 RLARRGGVKRISGLIYEEVRAVLKSFLESVIRD----AVTYTEHAKRKTVTSLDVVYALK 92 R+ + G +R+S ++ R L LE + RD A+ HA RKT+ + D+ A++ Sbjct: 10 RIIKDAGAERVS----DDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIELAVR 65 Query: 93 R 93 R Sbjct: 66 R 66 >1B67-A nrPDB Length = 68 Score = 28.9 bits (63), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 37 RLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 R+ + G +R+S + VL+ E + +AV +HA RKT+ + D+ A K Sbjct: 10 RIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 >2I5P-O nrPDB Length = 342 Score = 28.5 bits (62), Expect = 0.61, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 44 VKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHA 77 VK + Y+E++A +K E ++D V YTE A Sbjct: 257 VKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDA 290 >3B0B-B nrPDB Length = 107 Score = 27.7 bits (60), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 18/36 (50%) Query: 63 LESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTL 98 E+ RD + HAKR T+TS DV +R L Sbjct: 56 CENFARDLEMFARHAKRSTITSEDVKLLARRSNSLL 91 >1TAF-B nrPDB Length = 70 Score = 27.7 bits (60), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 35/64 (54%) Query: 29 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVV 88 I+ +++ +A GV +S +E+ + L+ +++DA + HAKR+ ++ D+ Sbjct: 6 SISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDID 65 Query: 89 YALK 92 +LK Sbjct: 66 MSLK 69 >3VH5-A nrPDB Length = 140 Score = 27.7 bits (60), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 64 ESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTL 98 E+ RD + HAKR T+TS DV +R L Sbjct: 57 ENFARDLEMFARHAKRSTITSEDVKLLARRSNSLL 91 >4WV4-B nrPDB Length = 97 Score = 27.3 bits (59), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 53 EEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 E + +L+S++ + R A +Y EH R T D+V L G Sbjct: 36 ETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMG 78 >2ZNM-A nrPDB Length = 195 Score = 27.3 bits (59), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 30 ITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIR 68 + +P + LAR +SGL Y+ AV K+ E IR Sbjct: 63 VWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIR 101 >1H3O-B nrPDB Length = 76 Score = 26.9 bits (58), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 30 ITKPAIRRLARR-GGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVV 88 +TK ++ L R +++ + E + + F+ESV+ A H K T+ DV Sbjct: 6 LTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQ 65 Query: 89 YALKRQG 95 L+RQ Sbjct: 66 LHLERQW 72 >4IA5-A nrPDB Length = 591 Score = 26.2 bits (56), Expect = 3.7, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 57 AVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 91 A + +F ES RD V TE++ R T+++ VY L Sbjct: 492 AFIGNFAESPTRDTVFTTEYSVR---TAMEAVYTL 523 >5ZBX-A nrPDB Length = 141 Score = 26.2 bits (56), Expect = 3.8, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 60 KSFLESVIRDAVTYTEHAKRKTVTSLDVVYA 90 ++FL + DA T HAKR T+ D+ A Sbjct: 103 EAFLVHLFEDAYLLTLHAKRVTIMPKDIQLA 133 >1O7D-D nrPDB Length = 282 Score = 25.8 bits (55), Expect = 4.8, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 1 MSGRGKGGKGLGKGGAKR--HRKILRDNIQGITKP 33 ++ R +GG L G + HR++L+D+ +G+ +P Sbjct: 192 LTDRSQGGSSLRDGSLELMVHRRLLKDDARGVGEP 226 >2WJV-A nrPDB Length = 800 Score = 25.4 bits (54), Expect = 5.8, Method: Composition-based stats. Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 80 KTVTSLDVVYALKRQG 95 KTVTS +VY L RQG Sbjct: 384 KTVTSATIVYHLARQG 399 >5O2N-A nrPDB Length = 616 Score = 25.4 bits (54), Expect = 6.1, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 14 GGAKRHRKI-LRDNIQGITKPAIRRLARRGGVKR 46 G + RKI R+N+ K ++RR+A G VKR Sbjct: 350 AGEELGRKIDTRNNVPDAGKNSVRRMAEDGAVKR 383 >5G49-A nrPDB Length = 97 Score = 25.4 bits (54), Expect = 6.5, Method: Compositional matrix adjust. Identities = 13/54 (24%), Positives = 29/54 (53%) Query: 46 RISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 +IS E ++ + ++ + +A + +RKT+T+ DV++A+ + G Y Sbjct: 31 KISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 84 >6EJ5-A nrPDB Length = 637 Score = 25.0 bits (53), Expect = 6.9, Method: Composition-based stats. Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 80 KTVTSLDVVYALKRQG 95 KTVTS +VY L RQG Sbjct: 221 KTVTSATIVYHLARQG 236 >1TAF-A nrPDB Length = 68 Score = 25.0 bits (53), Expect = 7.4, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 17/26 (65%) Query: 62 FLESVIRDAVTYTEHAKRKTVTSLDV 87 ++ S++ DA Y HA++KT+ DV Sbjct: 34 YVTSILDDAKVYANHARKKTIDLDDV 59 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6GEN-C nrPDB 155 3e-39 3W99-B nrPDB 143 1e-35 4XYI-B nrPDB 138 4e-34 6A5L-b nrPDB 136 1e-33 1AOI-B nrPDB 136 2e-33 2YFV-B nrPDB 121 7e-29 2L5A-A nrPDB 115 3e-27 2LY8-A nrPDB 113 2e-26 Sequences not found previously or not previously below threshold: 1KU5-A nrPDB 34 0.014 3B0C-T nrPDB 32 0.069 6MZC-I nrPDB 31 0.16 2I5P-O nrPDB 30 0.31 1TAF-B nrPDB 30 0.32 6F3T-E nrPDB 29 0.44 1B67-A nrPDB 29 0.51 6MZC-R nrPDB 29 0.56 3B0B-B nrPDB 29 0.56 5FUR-L nrPDB 29 0.62 1BFM-A nrPDB 29 0.64 4WV4-B nrPDB 28 0.79 3VH5-A nrPDB 28 0.80 6MZM-K nrPDB 28 0.84 1F1E-A nrPDB 27 2.0 1TAF-A nrPDB 26 2.9 5G49-A nrPDB 26 4.0 4IA5-A nrPDB 26 4.1 1O7D-D nrPDB 26 4.3 1H3O-B nrPDB 26 4.6 5O2N-A nrPDB 26 5.0 2ZNM-A nrPDB 25 5.8 2WJV-A nrPDB 25 6.0 6EJ5-A nrPDB 25 6.6 1MMF-A nrPDB 25 8.2 CONVERGED! >6GEN-C nrPDB Length = 103 Score = 155 bits (393), Expect = 3e-39, Method: Composition-based stats. Identities = 102/103 (99%), Positives = 103/103 (100%) Query: 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLK 60 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLK Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLK 60 Query: 61 SFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103 SFLESVIRD+VTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG Sbjct: 61 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103 >3W99-B nrPDB Length = 105 Score = 143 bits (362), Expect = 1e-35, Method: Composition-based stats. Identities = 80/87 (91%), Positives = 84/87 (96%) Query: 17 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEH 76 KRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEH Sbjct: 19 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH 78 Query: 77 AKRKTVTSLDVVYALKRQGRTLYGFGG 103 AKRKTVT++DVVYALKRQGRTLYGFGG Sbjct: 79 AKRKTVTAMDVVYALKRQGRTLYGFGG 105 >4XYI-B nrPDB Length = 103 Score = 138 bits (349), Expect = 4e-34, Method: Composition-based stats. Identities = 79/86 (91%), Positives = 83/86 (96%) Query: 18 RHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHA 77 RHRKILRDNIQGITKPAIRRLARRGGVKRIS L+Y+E RAVLK FLE+VIRDAVTYTEHA Sbjct: 18 RHRKILRDNIQGITKPAIRRLARRGGVKRISALVYDETRAVLKLFLENVIRDAVTYTEHA 77 Query: 78 KRKTVTSLDVVYALKRQGRTLYGFGG 103 KRKTVTSLDVVYALKRQGRT+YGFGG Sbjct: 78 KRKTVTSLDVVYALKRQGRTIYGFGG 103 >6A5L-b nrPDB Length = 106 Score = 136 bits (344), Expect = 1e-33, Method: Composition-based stats. Identities = 79/86 (91%), Positives = 83/86 (96%) Query: 18 RHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHA 77 RHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA Sbjct: 21 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 80 Query: 78 KRKTVTSLDVVYALKRQGRTLYGFGG 103 KRKTVT++DVVYALKRQGRTLYGFGG Sbjct: 81 KRKTVTAMDVVYALKRQGRTLYGFGG 106 >1AOI-B nrPDB Length = 87 Score = 136 bits (343), Expect = 2e-33, Method: Composition-based stats. Identities = 80/87 (91%), Positives = 84/87 (96%) Query: 17 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEH 76 KRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEH Sbjct: 1 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH 60 Query: 77 AKRKTVTSLDVVYALKRQGRTLYGFGG 103 AKRKTVT++DVVYALKRQGRTLYGFGG Sbjct: 61 AKRKTVTAMDVVYALKRQGRTLYGFGG 87 >2YFV-B nrPDB Length = 74 Score = 121 bits (304), Expect = 7e-29, Method: Composition-based stats. Identities = 72/74 (97%), Positives = 73/74 (98%) Query: 25 DNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTS 84 DNIQGITKPAIRRLARRGGVKRISGLIYEEVR VLK+FLESVIRDAVTYTEHAKRKTVTS Sbjct: 1 DNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTS 60 Query: 85 LDVVYALKRQGRTL 98 LDVVYALKRQGRTL Sbjct: 61 LDVVYALKRQGRTL 74 >2L5A-A nrPDB Length = 235 Score = 115 bits (289), Expect = 3e-27, Method: Composition-based stats. Identities = 61/63 (96%), Positives = 63/63 (100%) Query: 41 RGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYG 100 +GGVKRISGLIYEEVRAVLKSFLESVIRD+VTYTEHAKRKTVTSLDVVYALKRQGRTLYG Sbjct: 173 KGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYG 232 Query: 101 FGG 103 FGG Sbjct: 233 FGG 235 >2LY8-A nrPDB Length = 121 Score = 113 bits (282), Expect = 2e-26, Method: Composition-based stats. Identities = 59/61 (96%), Positives = 60/61 (98%) Query: 43 GVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 102 G KRISGLIYEEVRAVLKSFLESVIRD+VTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG Sbjct: 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 120 Query: 103 G 103 G Sbjct: 121 G 121 >1KU5-A nrPDB Length = 70 Score = 34.1 bits (77), Expect = 0.014, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Query: 35 IRRLARRGGVKRISGLIYEEVRAVLKSFLE----SVIRDAVTYTEHAKRKTVTSLDVVYA 90 + RL R+ G +R+S E+ VL +LE + + AV + HA RKTV D+ A Sbjct: 12 VDRLIRKAGAERVS----EQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLA 67 Query: 91 LK 92 +K Sbjct: 68 IK 69 >3B0C-T nrPDB Length = 111 Score = 31.8 bits (71), Expect = 0.069, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 52 YEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 Y+ V + + + + D Y++HA RKTV DV ++RQG Sbjct: 30 YKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 >6MZC-I nrPDB Length = 677 Score = 30.7 bits (68), Expect = 0.16, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 63 LESVIRDAVTYTEHAKRKTVTSLDVVYALK-RQGRTLYGF 101 ++ + +DA+ + KR+ +T+ D+ YALK + LYGF Sbjct: 47 IKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 86 >2I5P-O nrPDB Length = 342 Score = 29.5 bits (65), Expect = 0.31, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 44 VKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHA 77 VK + Y+E++A +K E ++D V YTE A Sbjct: 257 VKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDA 290 >1TAF-B nrPDB Length = 70 Score = 29.5 bits (65), Expect = 0.32, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 30 ITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVY 89 I+ +++ +A GV +S +E+ + L+ +++DA + HAKR+ ++ D+ Sbjct: 7 ISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDM 66 Query: 90 ALK 92 +LK Sbjct: 67 SLK 69 >6F3T-E nrPDB Length = 94 Score = 29.1 bits (64), Expect = 0.44, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 63 LESVIRDAVTYTEHAKRKTVTSLDVVYALK-RQGRTLYGF 101 ++ + +DA+ + KR+ +T+ D+ YALK + LYGF Sbjct: 43 IKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 82 >1B67-A nrPDB Length = 68 Score = 28.8 bits (63), Expect = 0.51, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 35 IRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 I R+ + G +R+S + VL+ E + +AV +HA RKT+ + D+ A K Sbjct: 8 IGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 >6MZC-R nrPDB Length = 161 Score = 28.8 bits (63), Expect = 0.56, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%) Query: 12 GKGGAKRHRKILRDNIQGITKPAIRRLARR-GGVKRISGLIYEEVRAVLKSFLESVIRDA 70 G GG ++ +N Q +TK ++ L R +++ + E + + F+ESV+ A Sbjct: 45 GAGG-----RLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAA 99 Query: 71 VTYTEHAKRKTVTSLDVVYALKRQGRT-LYGFG 102 H K T+ DV L+RQ + GFG Sbjct: 100 CQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 132 >3B0B-B nrPDB Length = 107 Score = 28.8 bits (63), Expect = 0.56, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 64 ESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTL 98 E+ RD + HAKR T+TS DV +R L Sbjct: 57 ENFARDLEMFARHAKRSTITSEDVKLLARRSNSLL 91 >5FUR-L nrPDB Length = 310 Score = 28.8 bits (63), Expect = 0.62, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 53 EEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 E + +L+S++ + R A +Y EH R T D+V L G Sbjct: 59 ETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMG 101 >1BFM-A nrPDB Length = 69 Score = 28.8 bits (63), Expect = 0.64, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%) Query: 35 IRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRD----AVTYTEHAKRKTVTSLDVVYA 90 I R+ + G +R+S ++ R L LE + RD A+ HA RKT+ + D+ A Sbjct: 8 IGRIIKDAGAERVS----DDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIELA 63 Query: 91 LKR 93 ++R Sbjct: 64 VRR 66 >4WV4-B nrPDB Length = 97 Score = 28.4 bits (62), Expect = 0.79, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 53 EEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 E + +L+S++ + R A +Y EH R T D+V L G Sbjct: 36 ETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMG 78 >3VH5-A nrPDB Length = 140 Score = 28.4 bits (62), Expect = 0.80, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 64 ESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTL 98 E+ RD + HAKR T+TS DV +R L Sbjct: 57 ENFARDLEMFARHAKRSTITSEDVKLLARRSNSLL 91 >6MZM-K nrPDB Length = 310 Score = 28.4 bits (62), Expect = 0.84, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 53 EEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 E + +L+S++ + R A +Y EH R T D+V L G Sbjct: 59 ETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMG 101 >1F1E-A nrPDB Length = 154 Score = 26.8 bits (58), Expect = 2.0, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 32 KPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 91 + +RR+ +R G++R S + ++ E + A Y + RKTV DV A+ Sbjct: 85 RATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAI 144 >1TAF-A nrPDB Length = 68 Score = 26.4 bits (57), Expect = 2.9, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 62 FLESVIRDAVTYTEHAKRKTVTSLDVVYA 90 ++ S++ DA Y HA++KT+ DV A Sbjct: 34 YVTSILDDAKVYANHARKKTIDLDDVRLA 62 >5G49-A nrPDB Length = 97 Score = 26.1 bits (56), Expect = 4.0, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 28/50 (56%) Query: 46 RISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 +IS E ++ + ++ + +A + +RKT+T+ DV++A+ + G Sbjct: 31 KISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 80 >4IA5-A nrPDB Length = 591 Score = 26.1 bits (56), Expect = 4.1, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 57 AVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 91 A + +F ES RD V TE++ R T+++ VY L Sbjct: 492 AFIGNFAESPTRDTVFTTEYSVR---TAMEAVYTL 523 >1O7D-D nrPDB Length = 282 Score = 25.7 bits (55), Expect = 4.3, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 1 MSGRGKGGKGLGKGGAKR--HRKILRDNIQGITKP 33 ++ R +GG L G + HR++L+D+ +G+ +P Sbjct: 192 LTDRSQGGSSLRDGSLELMVHRRLLKDDARGVGEP 226 >1H3O-B nrPDB Length = 76 Score = 25.7 bits (55), Expect = 4.6, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 62 FLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 F+ESV+ A H K T+ DV L+RQ Sbjct: 39 FIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 >5O2N-A nrPDB Length = 616 Score = 25.7 bits (55), Expect = 5.0, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 14 GGAKRHRKI-LRDNIQGITKPAIRRLARRGGVKR 46 G + RKI R+N+ K ++RR+A G VKR Sbjct: 350 AGEELGRKIDTRNNVPDAGKNSVRRMAEDGAVKR 383 >2ZNM-A nrPDB Length = 195 Score = 25.3 bits (54), Expect = 5.8, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 30 ITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIR 68 + +P + LAR +SGL Y+ AV K+ E IR Sbjct: 63 VWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIR 101 >2WJV-A nrPDB Length = 800 Score = 25.3 bits (54), Expect = 6.0, Method: Composition-based stats. Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 80 KTVTSLDVVYALKRQG 95 KTVTS +VY L RQG Sbjct: 384 KTVTSATIVYHLARQG 399 >6EJ5-A nrPDB Length = 637 Score = 25.3 bits (54), Expect = 6.6, Method: Composition-based stats. Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 80 KTVTSLDVVYALKRQG 95 KTVTS +VY L RQG Sbjct: 221 KTVTSATIVYHLARQG 236 >1MMF-A nrPDB Length = 555 Score = 24.9 bits (53), Expect = 8.2, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 65 SVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 +V+ D ++ E ++ +T LD+V AL R G Sbjct: 453 NVVED-LSAVEEMMKRNITGLDIVGALSRSG 482 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.315 0.146 0.421 Lambda K H 0.267 0.0425 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,374,778 Number of Sequences: 36641 Number of extensions: 159493 Number of successful extensions: 657 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 581 Number of HSP's gapped (non-prelim): 96 length of query: 103 length of database: 10,336,785 effective HSP length: 70 effective length of query: 33 effective length of database: 7,771,915 effective search space: 256473195 effective search space used: 256473195 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 53 (25.0 bits)