BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q8K4Z3
(282 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
2O8N-A nrPDB 537 e-153
1JZT-A nrPDB 177 6e-45
3K5W-A nrPDB 59 3e-09
3RRE-A nrPDB 56 2e-08
2WIY-A nrPDB 31 0.55
3LOY-A nrPDB 29 1.8
6F1T-i nrPDB 29 2.1
3KD8-A nrPDB 29 2.8
6F1Y-j nrPDB 29 2.9
3NJT-A nrPDB 28 4.8
2QV5-A nrPDB 27 7.7
>2O8N-A nrPDB
Length = 265
Score = 537 bits (1383), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 25 QQSVCRARPIWWGTQRRGSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLS 84
QQSVCRARPIWWGTQRRGSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLS
Sbjct: 2 QQSVCRARPIWWGTQRRGSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLS 61
Query: 85 CATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPL 144
CATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPL
Sbjct: 62 CATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPL 121
Query: 145 FTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGL 204
FTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGL
Sbjct: 122 FTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGL 181
Query: 205 TVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKK 264
TVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKK
Sbjct: 182 TVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKK 241
Query: 265 YQLNLPSYPDTECVYRLQ 282
YQLNLPSYPDTECVYRLQ
Sbjct: 242 YQLNLPSYPDTECVYRLQ 259
>1JZT-A nrPDB
Length = 246
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 144/251 (57%), Gaps = 24/251 (9%)
Query: 49 AAVKYLSQEEAQAVDQELFN-EYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPP--TV 105
+ +K +S + A +D+EL + F++ QLMELAG S A A+ + +P +++ V
Sbjct: 2 STLKVVSSKLAAEIDKELMGPQIGFTLQQLMELAGFSVAQAVCRQFPLRGKTETEKGKHV 61
Query: 106 LVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNK-PLFTGLVTQCQKMDIPFLGE-- 162
VI GPGNNGGDGLVCARHLKLFGY P ++YPKR + + LV Q +P L +
Sbjct: 62 FVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVLSQDE 121
Query: 163 ------MPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGL--TVPIASIDIP 214
+ PE + +VDAIFGFSFK +REPF I+ L + +PI S+D+P
Sbjct: 122 GNWLEYLKPEKTLC------IVDAIFGFSFKPPMREPFKGIVEELCKVQNIIPIVSVDVP 175
Query: 215 SGWDVEKGNPS--GIQPDLLISLTAPKKSATHF--TGRYHYLGGRFVPPALEKKYQLNLP 270
+GWDV+KG S I P +L+SLT PK ++H HY+GGRF+P K+
Sbjct: 176 TGWDVDKGPISQPSINPAVLVSLTVPKPCSSHIRENQTTHYVGGRFIPRDFANKFGFEPF 235
Query: 271 SYPDTECVYRL 281
Y T+ + +L
Sbjct: 236 GYESTDQILKL 246
>3K5W-A nrPDB
Length = 475
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 35/196 (17%)
Query: 57 EEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGG 116
E+ A+D+ E S D LME A ++ A+ + + V+++CG G+NGG
Sbjct: 7 EKVNALDKRAIEELFLSEDILMENAAMALERAVLQN------ASLGAKVIILCGSGDNGG 60
Query: 117 DGLVCARHLKLFG-YQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYE 175
DG AR +L G ++ ++ K P+ Q QK E + +V + YE
Sbjct: 61 DGYALAR--RLVGRFRVLVFEMKLTKSPM-----CQLQK-------ERAKKAGVVIKTYE 106
Query: 176 -----------LVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVE-KGN 223
+++D + G FKG + EPF + S+ IA DIPSG D + + +
Sbjct: 107 ENALNQNLECDVLIDCVIGSHFKGKL-EPFLNFESLSQKARFKIAC-DIPSGIDSKGRVD 164
Query: 224 PSGIQPDLLISLTAPK 239
+ DL IS+ A K
Sbjct: 165 KRAFKADLTISMGAIK 180
>3RRE-A nrPDB
Length = 502
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 19/196 (9%)
Query: 60 QAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGL 119
+ +D+ EY LME AG+S A+ + S + LV+CG GNNGGDG
Sbjct: 14 KEIDELTIKEYGVDSRILMERAGISVVLAMEEELGNLSDYR----FLVLCGGGNNGGDGF 69
Query: 120 VCARHLKLFGYQPTIYY---PKRPNKPLFTGLVTQCQKMDIPFLGEMPP--EPMMVDELY 174
V AR+L + + K P+ GL + F G++ EP +++E +
Sbjct: 70 VVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKK-------FGGKVVEQFEPSILNE-F 121
Query: 175 ELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGN--PSGIQPDLL 232
++VVDAIFG +G++ + I+++++ + S+D+PSG D G + ++ DL
Sbjct: 122 DVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSGIDSNTGKVLRTAVKADLT 181
Query: 233 ISLTAPKKSATHFTGR 248
++ PK F GR
Sbjct: 182 VTFGVPKIGHILFPGR 197
>2WIY-A nrPDB
Length = 394
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 42 GSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKS 101
G A A YLS A+ ++ + N D L++ A T S++
Sbjct: 174 GDVDRAAVAFGYLSARVAEMLEDKRVNPGDGLADSLLDAARAGEITE----------SEA 223
Query: 102 PPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFL 160
T+LV G+ G + A ++LF +P ++ R ++ ++ + +MD P L
Sbjct: 224 IATILVFYAVGHMAI-GYLIASGIELFARRPEVFTAFRNDESARAAIINEMVRMDPPQL 281
>3LOY-A nrPDB
Length = 633
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 75 DQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTI 134
+ + E+ L+ I KA K PP V V+C P NG D ++ + Y +
Sbjct: 103 EDIQEIEELATTHPIVKA--EIEKLKLPPHVRVVCDPWMNGTDSKEDRMLIQCYMYLASA 160
Query: 135 YYPKRPN-------KPLFTGLVTQCQKMD 156
+P+ + P+F L + +MD
Sbjct: 161 AHPESNHYSLPLKFSPVFECLTKKFVRMD 189
>6F1T-i nrPDB
Length = 492
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 166 EPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEK 221
E +D LY+ +V +GF F L V ++ IP+GWD EK
Sbjct: 276 EEKNLDLLYKYIVHKTYGFHF-------------TTPALVVEKDAVFIPAGWDNEK 318
>3KD8-A nrPDB
Length = 399
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 118 GLVCAR---HLKLFGYQPTIYYPKR 139
G+ C H+ L GY P +YYP R
Sbjct: 55 GIRCGSDTSHMSLLGYDPKVYYPGR 79
>6F1Y-j nrPDB
Length = 337
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 166 EPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEK 221
E +D LY+ +V +GF F L V ++ IP+GWD EK
Sbjct: 240 EEKNLDLLYKYIVHKTYGFHF-------------TTPALVVEKDAVFIPAGWDNEK 282
>3NJT-A nrPDB
Length = 566
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 46 MAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 88
+AG +++ SQ Q Q+L N YQ +V +AG + T+
Sbjct: 427 LAGQPIQWASQLGFQYSRQQLLNSYQITVGDEYTVAGYNLRTS 469
>2QV5-A nrPDB
Length = 261
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 189 DVREPFHSILSVLSGLTVPIASIDIPS---GWD-VEKGNPSGIQPDLLISLTAPKKSATH 244
D R H IL L +P+ P G D + G+P+ + D L A T+
Sbjct: 74 DARREGHEIL-----LQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMA---KITN 125
Query: 245 FTGRYHYLGGRFV 257
+TG +YLGGRF+
Sbjct: 126 YTGVMNYLGGRFL 138
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
2O8N-A nrPDB 438 e-123
1JZT-A nrPDB 308 2e-84
3RRE-A nrPDB 193 8e-50
3K5W-A nrPDB 180 6e-46
Sequences not found previously or not previously below threshold:
2FYO-A nrPDB 30 0.96
3IT8-D nrPDB 29 1.9
5V1X-E nrPDB 29 2.4
2W6C-X nrPDB 28 4.1
3NJ4-A nrPDB 28 5.0
CONVERGED!
>2O8N-A nrPDB
Length = 265
Score = 438 bits (1126), Expect = e-123, Method: Composition-based stats.
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 25 QQSVCRARPIWWGTQRRGSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLS 84
QQSVCRARPIWWGTQRRGSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLS
Sbjct: 2 QQSVCRARPIWWGTQRRGSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLS 61
Query: 85 CATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPL 144
CATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPL
Sbjct: 62 CATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPL 121
Query: 145 FTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGL 204
FTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGL
Sbjct: 122 FTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGL 181
Query: 205 TVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKK 264
TVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKK
Sbjct: 182 TVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKK 241
Query: 265 YQLNLPSYPDTECVYRLQ 282
YQLNLPSYPDTECVYRLQ
Sbjct: 242 YQLNLPSYPDTECVYRLQ 259
>1JZT-A nrPDB
Length = 246
Score = 308 bits (788), Expect = 2e-84, Method: Composition-based stats.
Identities = 102/251 (40%), Positives = 144/251 (57%), Gaps = 24/251 (9%)
Query: 49 AAVKYLSQEEAQAVDQELFN-EYQFSVDQLMELAGLSCATAIAKAYPPTSMSKS--PPTV 105
+ +K +S + A +D+EL + F++ QLMELAG S A A+ + +P +++ V
Sbjct: 2 STLKVVSSKLAAEIDKELMGPQIGFTLQQLMELAGFSVAQAVCRQFPLRGKTETEKGKHV 61
Query: 106 LVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNK-PLFTGLVTQCQKMDIPFLGE-- 162
VI GPGNNGGDGLVCARHLKLFGY P ++YPKR + + LV Q +P L +
Sbjct: 62 FVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVLSQDE 121
Query: 163 ------MPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGL--TVPIASIDIP 214
+ PE + +VDAIFGFSFK +REPF I+ L + +PI S+D+P
Sbjct: 122 GNWLEYLKPEKTLC------IVDAIFGFSFKPPMREPFKGIVEELCKVQNIIPIVSVDVP 175
Query: 215 SGWDVEKGNPS--GIQPDLLISLTAPKKSATHF--TGRYHYLGGRFVPPALEKKYQLNLP 270
+GWDV+KG S I P +L+SLT PK ++H HY+GGRF+P K+
Sbjct: 176 TGWDVDKGPISQPSINPAVLVSLTVPKPCSSHIRENQTTHYVGGRFIPRDFANKFGFEPF 235
Query: 271 SYPDTECVYRL 281
Y T+ + +L
Sbjct: 236 GYESTDQILKL 246
>3RRE-A nrPDB
Length = 502
Score = 193 bits (490), Expect = 8e-50, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 19/196 (9%)
Query: 60 QAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGL 119
+ +D+ EY LME AG+S A+ + S + LV+CG GNNGGDG
Sbjct: 14 KEIDELTIKEYGVDSRILMERAGISVVLAMEEELGNLSDYR----FLVLCGGGNNGGDGF 69
Query: 120 VCARHLKLFGYQPTIYY---PKRPNKPLFTGLVTQCQKMDIPFLGEMPP--EPMMVDELY 174
V AR+L + + K P+ GL + F G++ EP +++E +
Sbjct: 70 VVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKK-------FGGKVVEQFEPSILNE-F 121
Query: 175 ELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGN--PSGIQPDLL 232
++VVDAIFG +G++ + I+++++ + S+D+PSG D G + ++ DL
Sbjct: 122 DVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSGIDSNTGKVLRTAVKADLT 181
Query: 233 ISLTAPKKSATHFTGR 248
++ PK F GR
Sbjct: 182 VTFGVPKIGHILFPGR 197
>3K5W-A nrPDB
Length = 475
Score = 180 bits (457), Expect = 6e-46, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 35/198 (17%)
Query: 57 EEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGG 116
E+ A+D+ E S D LME A ++ A+ + + V+++CG G+NGG
Sbjct: 7 EKVNALDKRAIEELFLSEDILMENAAMALERAVLQN------ASLGAKVIILCGSGDNGG 60
Query: 117 DGLVCARHLKLFG-YQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYE 175
DG AR +L G ++ ++ K P+ Q QK E + +V + YE
Sbjct: 61 DGYALAR--RLVGRFRVLVFEMKLTKSPM-----CQLQK-------ERAKKAGVVIKTYE 106
Query: 176 -----------LVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVE-KGN 223
+++D + G FKG + EPF + S+ IA DIPSG D + + +
Sbjct: 107 ENALNQNLECDVLIDCVIGSHFKGKL-EPFLNFESLSQKARFKIAC-DIPSGIDSKGRVD 164
Query: 224 PSGIQPDLLISLTAPKKS 241
+ DL IS+ A K
Sbjct: 165 KRAFKADLTISMGAIKSC 182
>2FYO-A nrPDB
Length = 653
Score = 30.5 bits (67), Expect = 0.96, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 13/100 (13%)
Query: 64 QELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLV----------ICGPGN 113
++ Y + L++ + A+ K + + +L I GP
Sbjct: 53 EDTMKRYLNAQKPLLDDSQFRRTEALCKNFETGVGKELHAHLLAQDKQNKHTSYISGPWF 112
Query: 114 NGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQ 153
D + AR + + P + + P L
Sbjct: 113 ---DMYLTARDSIVLNFNPFMAFNPDPKSEYNDQLTRATN 149
>3IT8-D nrPDB
Length = 324
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 242 ATHFTGRYHYLGGRFVPPALEKKYQLNL--PSYP 273
+ HF G Y Y+ GR+ P +K P +P
Sbjct: 219 SEHFKGEYKYVNGRYYP-EWGRKSNYEPGEPGFP 251
>5V1X-E nrPDB
Length = 501
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 177 VVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLIS-- 234
V+D + S VR PF I+ + I+ +D G + + PD LIS
Sbjct: 197 VIDVV---SSMPGVRFPFEDIVK-ICKEEEIISCVDGAQGIGMVDLKITETDPDFLISNC 252
Query: 235 ---LTAPKKSATHF 245
L P+ A +
Sbjct: 253 HKWLFTPRGCAVFY 266
>2W6C-X nrPDB
Length = 586
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 132 PTIYYPKRPNKPLFTGLVTQCQKMD--IPFLGEMPPEPMMVDELYELVVDAIFGFSFKGD 189
++ +R L L + I L E P+ ++ E L D+IF FSF
Sbjct: 257 VSVAEGRRRAVELGRNLNCNLNSDEELIHCLREKKPQELIDVEWNVLPFDSIFRFSFVPV 316
Query: 190 VREPF--HSILSVLSGLTVP 207
+ F S+ S+L+
Sbjct: 317 IDGEFFPTSLESMLNSGNFK 336
>3NJ4-A nrPDB
Length = 435
Score = 27.8 bits (60), Expect = 5.0, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 83 LSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNK 142
C ++ + V V+ G G+ G CA+ L+ FG + I
Sbjct: 196 YGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKG---CAQALRGFGARVII-----TEI 247
Query: 143 PLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFK 187
L + ++ + E E + +D I G F+
Sbjct: 248 DPINALQAAMEGYEVTTMDEACQEGNIFVTTTGC-IDIILGRHFE 291
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.312 0.130 0.340
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,288,309
Number of Sequences: 36641
Number of extensions: 398018
Number of successful extensions: 1071
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 31
length of query: 282
length of database: 10,336,785
effective HSP length: 96
effective length of query: 186
effective length of database: 6,819,249
effective search space: 1268380314
effective search space used: 1268380314
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 58 (27.0 bits)