BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q86WV5
         (123 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4JOI-D nrPDB                                                          251   5e-68
4XIG-S nrPDB                                                           27   3.0  
3QUB-A nrPDB                                                           26   3.4  
1O92-A nrPDB                                                           26   4.7  
2YIB-D nrPDB                                                           25   8.0  
2YIB-A nrPDB                                                           25   8.6  

>4JOI-D nrPDB
          Length = 122

 Score =  251 bits (641), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 2   MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKL 61
           MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKL
Sbjct: 1   MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKL 60

Query: 62  VEPFHAQVGSLYIVLGELQHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQERGG 121
           VEPFHAQVGSLYIVLGELQHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQERGG
Sbjct: 61  VEPFHAQVGSLYIVLGELQHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQERGG 120

Query: 122 SQ 123
           SQ
Sbjct: 121 SQ 122


>4XIG-S nrPDB
          Length = 363

 Score = 26.6 bits (57), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 25/87 (28%)

Query: 2   MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKL 61
           +LP+ GT+  P                 G+  ++ +    VTL    GS++ Q+     +
Sbjct: 265 LLPRAGTHLAP-----------------GQEVVFGIRPEDVTLDGVEGSERAQIKATVDI 307

Query: 62  VEP------FHAQVG--SLYIVLGELQ 80
           VEP       HA VG  SL + +G L 
Sbjct: 308 VEPLGSESILHATVGDHSLVVKVGGLN 334


>3QUB-A nrPDB
          Length = 243

 Score = 26.2 bits (56), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 18 GQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVL 56
          G VP GS +R   +  L+DM       M  H    HQV+
Sbjct: 12 GLVPRGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVM 50


>1O92-A nrPDB
          Length = 396

 Score = 25.8 bits (55), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 79  LQHQQDRGSVVKARVLTCV------EGMNLPLLEQAIREQ 112
           +Q+ QD G+V+  RV T V      E + L  + +A++EQ
Sbjct: 187 VQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQ 226


>2YIB-D nrPDB
          Length = 770

 Score = 25.0 bits (53), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 88  VVKARVLTCVEGMNLPLLEQAIREQRLYKQER 119
           +V+   +  V G N PLLE A +   L K++R
Sbjct: 610 IVRYEAIRLVGGWNNPLLETAAKHMSLDKRKR 641


>2YIB-A nrPDB
          Length = 853

 Score = 25.0 bits (53), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 88  VVKARVLTCVEGMNLPLLEQAIREQRLYKQER 119
           +V+   +  V G N PLLE A +   L K++R
Sbjct: 610 IVRYEAIRLVGGWNNPLLETAAKHMSLDKRKR 641


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4JOI-D nrPDB                                                          250   1e-67

Sequences not found previously or not previously below threshold:

1O92-A nrPDB                                                           27   2.6  
3QUB-A nrPDB                                                           26   4.0  
4XIG-S nrPDB                                                           26   4.1  
2YIB-D nrPDB                                                           25   9.2  
2YIB-A nrPDB                                                           25   9.2  


CONVERGED!
>4JOI-D nrPDB
          Length = 122

 Score =  250 bits (639), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 2   MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKL 61
           MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKL
Sbjct: 1   MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKL 60

Query: 62  VEPFHAQVGSLYIVLGELQHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQERGG 121
           VEPFHAQVGSLYIVLGELQHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQERGG
Sbjct: 61  VEPFHAQVGSLYIVLGELQHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQERGG 120

Query: 122 SQ 123
           SQ
Sbjct: 121 SQ 122


>1O92-A nrPDB
          Length = 396

 Score = 26.5 bits (57), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 79  LQHQQDRGSVVKARVLTCV------EGMNLPLLEQAIREQ 112
           +Q+ QD G+V+  RV T V      E + L  + +A++EQ
Sbjct: 187 VQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQ 226


>3QUB-A nrPDB
          Length = 243

 Score = 26.2 bits (56), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 18 GQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVL 56
          G VP GS +R   +  L+DM       M  H    HQV+
Sbjct: 12 GLVPRGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVM 50


>4XIG-S nrPDB
          Length = 363

 Score = 26.2 bits (56), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 25/86 (29%)

Query: 2   MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKL 61
           +LP+ GT+  P                 G+  ++ +    VTL    GS++ Q+     +
Sbjct: 265 LLPRAGTHLAP-----------------GQEVVFGIRPEDVTLDGVEGSERAQIKATVDI 307

Query: 62  VEP------FHAQVG--SLYIVLGEL 79
           VEP       HA VG  SL + +G L
Sbjct: 308 VEPLGSESILHATVGDHSLVVKVGGL 333


>2YIB-D nrPDB
          Length = 770

 Score = 25.0 bits (53), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 88  VVKARVLTCVEGMNLPLLEQAIREQRLYKQER 119
           +V+   +  V G N PLLE A +   L K++R
Sbjct: 610 IVRYEAIRLVGGWNNPLLETAAKHMSLDKRKR 641


>2YIB-A nrPDB
          Length = 853

 Score = 25.0 bits (53), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 88  VVKARVLTCVEGMNLPLLEQAIREQRLYKQER 119
           +V+   +  V G N PLLE A +   L K++R
Sbjct: 610 IVRYEAIRLVGGWNNPLLETAAKHMSLDKRKR 641


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.321    0.137    0.409 

Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,933,961
Number of Sequences: 36641
Number of extensions: 171788
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 12
length of query: 123
length of database: 10,336,785
effective HSP length: 85
effective length of query: 38
effective length of database: 7,222,300
effective search space: 274447400
effective search space used: 274447400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)