BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q6YWF1
(165 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4RJ9-A nrPDB 328 7e-91
5A50-A nrPDB 208 9e-55
5A52-A nrPDB 203 3e-53
4NPK-A nrPDB 55 1e-08
4P42-A nrPDB 55 1e-08
3JZY-A nrPDB 48 2e-06
5YQ3-A nrPDB 48 2e-06
5IXC-A nrPDB 47 3e-06
5UE8-A nrPDB 47 5e-06
6NYT-A nrPDB 46 6e-06
5LOB-A nrPDB 45 2e-05
3RPB-A nrPDB 44 3e-05
2CM5-A nrPDB 44 3e-05
4DNL-A nrPDB 42 9e-05
3PFQ-A nrPDB 42 9e-05
1DQV-A nrPDB 42 1e-04
1A25-A nrPDB 40 5e-04
3NSJ-A nrPDB 39 8e-04
2UZP-A nrPDB 39 0.001
4LDC-A nrPDB 39 0.001
5W5C-F nrPDB 38 0.002
1RSY-A nrPDB 38 0.002
3F01-A nrPDB 38 0.002
2KI6-A nrPDB 38 0.002
6ANJ-A nrPDB 37 0.004
2D8K-A nrPDB 37 0.006
6ANK-A nrPDB 37 0.006
1UGK-A nrPDB 36 0.007
4LCV-A nrPDB 35 0.015
4MJJ-A nrPDB 35 0.022
1RH8-A nrPDB 33 0.075
2CHD-A nrPDB 32 0.088
2BWQ-A nrPDB 31 0.23
5EQJ-A nrPDB 30 0.56
2J3K-A nrPDB 30 0.61
1DXQ-A nrPDB 29 1.1
2DMG-A nrPDB 28 1.4
6DT1-A nrPDB 28 1.7
4V7O-A6 nrPDB 28 1.9
3CF4-A nrPDB 27 4.2
1OJL-A nrPDB 27 4.3
4WSI-A nrPDB 26 8.7
>4RJ9-A nrPDB
Length = 165
Score = 328 bits (841), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS 60
MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS
Sbjct: 1 MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS 60
Query: 61 IEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQNC 120
IEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQNC
Sbjct: 61 IEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQNC 120
Query: 121 LAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV 165
LAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV
Sbjct: 121 LAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV 165
>5A50-A nrPDB
Length = 177
Score = 208 bits (529), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 131/166 (78%), Gaps = 1/166 (0%)
Query: 1 MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS 60
++ L+GL+++R+ RGVNLAVRD+ SSDPYV+V+MGKQKLKTRVI K NPEWN++LTLS
Sbjct: 12 LMDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLS 71
Query: 61 IEDPAVPVRLEVYDKDTFI-DDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQN 119
+ D + V L VYD D F DD MG+AE +I P +E ++M+++G+ T+V V P+R+N
Sbjct: 72 VTDSNLTVLLTVYDHDMFSKDDKMGDAEFEISPYIEALRMQLDGLPSGTIVTTVKPSRRN 131
Query: 120 CLAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV 165
CLAEES + +GK+ QD+VLRLR VECGE+E QLQW+D+PGSKG+
Sbjct: 132 CLAEESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDLPGSKGL 177
>5A52-A nrPDB
Length = 168
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 128/165 (77%), Gaps = 4/165 (2%)
Query: 5 LVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDP 64
LVGL+++ V RGVNLA+RD+ SSDPY++V GKQKLKTRV+K + NPEWND+LTLS+ DP
Sbjct: 4 LVGLLRIHVKRGVNLAIRDISSSDPYIVVHCGKQKLKTRVVKHSVNPEWNDDLTLSVTDP 63
Query: 65 AVPVRLEVYDKDTF-IDDAMGNAELDIRPLVEVVKMKIE---GVADNTVVKKVVPNRQNC 120
+P++L VYD D DD MG AE I P +E +K + G+ + T++KK+ P+R+NC
Sbjct: 64 NLPIKLTVYDYDLLSADDKMGEAEFHIGPFIEAIKFAHQLGPGLPNGTIIKKIEPSRKNC 123
Query: 121 LAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV 165
L+E S I +++GK+ Q++ LRL+ VECGE+ELQL+W+D+PGS+G+
Sbjct: 124 LSESSHIVLNQGKIVQNMFLRLQHVECGEVELQLEWIDVPGSRGI 168
>4NPK-A nrPDB
Length = 299
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 11/103 (10%)
Query: 7 GLVKVRVVRGVNLAVRDLR-------SSDPYVIVRMGKQKLKTRVIKKTTNPEWNDEL-T 58
G++++ + +L +D SDPY I+R+G Q ++RVIK+ +P+WN+
Sbjct: 24 GVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEA 83
Query: 59 LSIEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKI 101
L E P + +E++D+D DD +G+ +D L+EV K ++
Sbjct: 84 LVYEHPGQELEIELFDEDPDKDDFLGSLMID---LIEVEKERL 123
>4P42-A nrPDB
Length = 474
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 11/103 (10%)
Query: 7 GLVKVRVVRGVNLAVRDLR-------SSDPYVIVRMGKQKLKTRVIKKTTNPEWNDEL-T 58
G++++ + +L +D SDPY I+R+G Q ++RVIK+ +P+WN+
Sbjct: 197 GVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEA 256
Query: 59 LSIEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKI 101
L E P + +E++D+D DD +G+ +D L+EV K ++
Sbjct: 257 LVYEHPGQELEIELFDEDPDKDDFLGSLMID---LIEVEKERL 296
>3JZY-A nrPDB
Length = 510
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 6 VGLVKVRVVRGVNL-AVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDP 64
+G + V V+ L A + S+PY + MG Q TR I+ T NP+WN I+D
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 65 AVPVR-LEVYDKDTFI-DDAMGNAELDI 90
V L ++D+D F DD +G E+ +
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPV 473
>5YQ3-A nrPDB
Length = 162
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 6 VGLVKVRVVRGVNLAVRDLRSS-DPYVIVRMGKQKLKTRVIKKTT--NPEWNDELTLSIE 62
VG+++V ++ G L D DPYV ++ Q K+ V K+ NP WND+L E
Sbjct: 3 VGILEVSLISGKGLKRSDFLGKIDPYVEIQYKGQTRKSSVAKEDGGRNPTWNDKLKWRAE 62
Query: 63 DPAVPVR----LEVYDKDTF-IDDAMGNAELDIRPLVEV 96
P ++V D DTF DD +G A + ++ L+E+
Sbjct: 63 FPGSGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEM 101
>5IXC-A nrPDB
Length = 814
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 34/144 (23%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRMGK---QKLKTRVIKKTTNPEWNDELTLSIEDP 64
+ VRV+ NL DL S +DPYVI+++ K KT+ + T++P WN+ I+
Sbjct: 28 LTVRVLEARNLRWADLLSEADPYVILQLSTAPGMKFKTKTLTDTSHPVWNEAFRFLIQSQ 87
Query: 65 AVPV-RLEVYDKDTFIDDAM--------------------------GNAELDIRPLVEVV 97
V L +YD+D+ +D + G ELD+ L+E
Sbjct: 88 VKNVLELSIYDEDSVTEDDICFKVLYDISEVLPGKLLRKTFSQSPQGEEELDVEFLMEET 147
Query: 98 KMKIEGVADNTVVKKVVPNRQNCL 121
+ E + N V +V +CL
Sbjct: 148 SDRPENLITNKV---IVARELSCL 168
>5UE8-A nrPDB
Length = 961
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 9 VKVRVVRGVNLAVRD-LRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVP 67
+ + VV L +D SSDPYV V++GK K +T+ I NP W + + +
Sbjct: 163 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 222
Query: 68 VRLEVYDKDTFI------------DDAMGNAELDIRPL 93
+++ V+D+D I DD +G +++R L
Sbjct: 223 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 260
>6NYT-A nrPDB
Length = 148
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 9 VKVRVVRGVNLAVRD-LRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVP 67
+ + VV L +D SSDPYV V++GK K +T+ I NP W + + +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 68 VRLEVYDKDTFI------------DDAMGNAELDIRPL 93
+++ V+D+D I DD +G +++R L
Sbjct: 79 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
>5LOB-A nrPDB
Length = 162
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVR----MGKQ-KLKTRVIKKTTNPEWNDELTLS 60
GL+ V ++R V+LA D SDP+V + MGK+ K KT++ KKT NPE+N+E
Sbjct: 38 GLI-VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 61 IEDPAVPVR---LEVYDKDTF-IDDAMGNAELDIRPLVEVVKMKIE 102
I+ + + + V+D D +D +G +L I E +K E
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 142
>3RPB-A nrPDB
Length = 140
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVR----MGKQ-KLKTRVIKKTTNPEWNDELTLS 60
GL+ V ++R V+LA D SDP+V + MGK+ K KT++ KKT NPE+N+E
Sbjct: 16 GLI-VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 61 IEDPAVPVR---LEVYDKDTF-IDDAMGNAELDIRPLVEVVKMKIE 102
I+ + + + V+D D +D +G +L I E +K E
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120
>2CM5-A nrPDB
Length = 166
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVR----MGKQ-KLKTRVIKKTTNPEWNDELTLS 60
GL+ V ++R V+LA D SDP+V + MGK+ K KT++ KKT NPE+N+E
Sbjct: 38 GLI-VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 61 IEDPAVPVR---LEVYDKDTF-IDDAMGNAELDIRPLVEVVKMKIE 102
I+ + + + V+D D +D +G +L I E +K E
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 142
>4DNL-A nrPDB
Length = 140
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 27 SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRL--EVYDKD-TF 78
SDPYV +++ + K KT+ I+ T NP+WN+ T ++ RL E++D D T
Sbjct: 39 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 98
Query: 79 IDDAMGNAELDIRPLVEVVKMKIEG 103
+D MG+ + E++KM G
Sbjct: 99 RNDFMGSLSFGV---SELMKMPASG 120
>3PFQ-A nrPDB
Length = 674
Score = 42.4 bits (98), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 27 SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRL--EVYDKD-TF 78
SDPYV +++ + K KT+ IK + NPEWN+ +++ RL E++D D T
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 79 IDDAMGNAELDIRPL 93
+D MG+ I L
Sbjct: 253 RNDFMGSLSFGISEL 267
>1DQV-A nrPDB
Length = 296
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 11 VRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI---ED 63
VR+++ ++L +D SDPYV + + K+K +T+V +KT NP +N+ S+ E
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83
Query: 64 PAVPVRLEVYDKDTFI-DDAMGNAELD 89
+ VYD D F D +G LD
Sbjct: 84 AQRKLHFSVYDFDRFSRHDLIGQVVLD 110
>1A25-A nrPDB
Length = 149
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 27 SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRL--EVYDKD-TF 78
SDPYV +++ + K KT+ IK + NPEWN+ +++ RL E++D D T
Sbjct: 52 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 79 IDDAMGNAELDIRPL 93
+D MG+ I L
Sbjct: 112 RNDFMGSLSFGISEL 126
>3NSJ-A nrPDB
Length = 540
Score = 39.3 bits (90), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 26 SSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS--IEDPAVPVRLEVYDKD-TFIDDA 82
++D Y+ V G Q+ +T V+ NP W D++ + P+R++V+D D + DD
Sbjct: 413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDL 472
Query: 83 MGNAE 87
+G+ +
Sbjct: 473 LGSCD 477
>2UZP-A nrPDB
Length = 144
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 27 SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRL--EVYDKD-TF 78
SDPYV +++ K KTR +K T NP WN+ +++ V RL EV+D D T
Sbjct: 41 SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTS 100
Query: 79 IDDAMGNAELDIRPLVEVVKMKIEG 103
+D MG + E++K ++G
Sbjct: 101 RNDFMGAMSFGVS---ELLKAPVDG 122
>4LDC-A nrPDB
Length = 149
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 11 VRVVRGVNLAVRDLRS-SDPYVIVRMG-----KQKLKTRVIKKTTNPEWNDELTLSIE 62
V +VR +LA D SDPYV + K K KT V KKT NPE+N+E I+
Sbjct: 22 VGIVRCAHLAAMDANGYSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIK 79
>5W5C-F nrPDB
Length = 282
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 11 VRVVRGVNLAVRDLR-SSDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI---ED 63
V +++ L D+ +SDPYV V + K+K +T+V +KT NP +N++ T + E
Sbjct: 21 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 80
Query: 64 PAVPVRLEVYDKDTF 78
+ + VYD D F
Sbjct: 81 GGKTLVMAVYDFDRF 95
>1RSY-A nrPDB
Length = 152
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 11 VRVVRGVNLAVRDLR-SSDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI---ED 63
V +++ L D+ +SDPYV V + K+K +T+V +KT NP +N++ T + E
Sbjct: 46 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105
Query: 64 PAVPVRLEVYDKDTF 78
+ + VYD D F
Sbjct: 106 GGKTLVMAVYDFDRF 120
>3F01-A nrPDB
Length = 143
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 11 VRVVRGVNLAVRDLR-SSDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI---ED 63
V +++ L D+ +SDPYV V + K+K +T+V +KT NP +N++ T + E
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 64 PAVPVRLEVYDKDTF 78
+ + VYD D F
Sbjct: 98 GGKTLVMAVYDFDRF 112
>2KI6-A nrPDB
Length = 128
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 11 VRVVRGVNLAVRDLR-SSDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI---ED 63
V +++ L D+ +SDPYV V + K+K +T+V +KT NP +N++ T + E
Sbjct: 21 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 80
Query: 64 PAVPVRLEVYDKDTF 78
+ + VYD D F
Sbjct: 81 GGKTLVMAVYDFDRF 95
>6ANJ-A nrPDB
Length = 148
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 11 VRVVRGVNLAVRDLR-SSDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTL 59
V+V++ L +D +SDP+V + + K KL+T+V +K NP WN+
Sbjct: 40 VKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 92
>2D8K-A nrPDB
Length = 141
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 11 VRVVRGVNLAVRDLR-SSDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTL 59
V++++ L +D +SDP+V + + K KL+T+V +K NP WN+
Sbjct: 30 VKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
>6ANK-A nrPDB
Length = 289
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 11 VRVVRGVNLAVRDLR-SSDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTL 59
V+V++ L +D +SDP+V + + K KL+T+V +K NP WN+
Sbjct: 40 VKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 92
>1UGK-A nrPDB
Length = 138
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 9 VKVRVVRGVNLAVRDLRSSDPYV---IVRMGKQKLKTRVIKKTTNPEWNDELTL 59
V ++ RG+ +SDPY+ I+ K K+KTRV++KT +P +++ T
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
>4LCV-A nrPDB
Length = 138
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 27 SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELT-LSIEDPAV---PVRLEVYDKDT 77
+DPYV + + KL+T+ ++ T NP WN+ LT I D + +R+ V D+D
Sbjct: 45 ADPYVKLHLLPGASKANKLRTKTLRNTLNPSWNETLTYYGITDEDMIRKTLRISVCDEDK 104
Query: 78 F 78
F
Sbjct: 105 F 105
>4MJJ-A nrPDB
Length = 138
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLS-I 61
+ ++R L D +DPYV + + KLKT+ + T NP WN++LT S I
Sbjct: 27 LHCSILRAKGLKPMDFNGLADPYVKLHLLPGACKANKLKTKTQRNTLNPVWNEDLTYSGI 86
Query: 62 EDPAVP---VRLEVYDKD 76
D + +R+ V D+D
Sbjct: 87 TDDDITHKVLRIAVCDED 104
>1RH8-A nrPDB
Length = 142
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 24/109 (22%)
Query: 2 LGHLVGLVKVRVVRGVNLAVRDLRS-SDPYVIVRM--------------GKQKLKTRVIK 46
LG+L+ + +++ NL RD SDP+V V + + K +T+ ++
Sbjct: 17 LGNLI----IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 47 KTTNPEWNDEL---TLSIED-PAVPVRLEVYDKDTF-IDDAMGNAELDI 90
K+ NPEWN + ++S+E + + V+D D F +D +G +D+
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>2CHD-A nrPDB
Length = 142
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 27 SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELT---LSIED-PAVPVRLEVYDKDT 77
+DPYV + + KL+T+ ++ T NP WN+ L ++ ED +R+ V D+D
Sbjct: 50 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 109
Query: 78 F-IDDAMGNAELDIRPL 93
F ++ +G ++ L
Sbjct: 110 FGHNEFIGETRFSLKKL 126
>2BWQ-A nrPDB
Length = 129
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 23 DLRSSDPYVIV-----RMGKQKLKTRVIKKTTNPEWNDELTLS 60
D R +PYV + R K K +T+ +KKT P+WN S
Sbjct: 35 DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
>5EQJ-A nrPDB
Length = 488
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 1 MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNP--EWNDELT 58
++G+ GL G ++ + R S P + +GK +L ++ IK N + E
Sbjct: 56 IIGYPFGLTFEIYYDGEEVSSDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPP 115
Query: 59 LSIEDPAVPVRLEVYDKDTFIDD--AMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPN 116
LSI++ +V + L D + MG+ ++ + E+ KMK E ++ ++ K++ +
Sbjct: 116 LSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELT-VEEIEKMKQESLSSKEIIDKIIKS 174
Query: 117 RQNCLAEESTIYISEGKV 134
++ T+Y E V
Sbjct: 175 HKSF--HNKTVYSQEKYV 190
>2J3K-A nrPDB
Length = 345
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 9 VKVRVVRGVN-LAVRDLR-SSDPYVIVRMGKQKLKTRVIKKTTNP 51
V++RV G N + V++L S DPY+ +RMGK T + + P
Sbjct: 30 VELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTP 74
>1DXQ-A nrPDB
Length = 273
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 104 VADNTVVKKVVPNRQNCLAEESTIYISEGKVKQDVVLRLRDVECGEI---ELQLQWVDIP 160
++ N + ++ ++ ES++ EG++ D+V + +E ++ + LQW +P
Sbjct: 50 ISRNDITGELKDSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVP 109
Query: 161 G 161
Sbjct: 110 A 110
>2DMG-A nrPDB
Length = 142
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 18 NLAVRDLRSSDPYVIV-------RMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVR 69
NL SDPYV + R G++K T V KKT NP ++ S+ P V R
Sbjct: 35 NLIAFSEDGSDPYVRMYLLPDKRRSGRRK--THVSKKTLNPVFDQSFDFSVSLPEVQRR 91
>6DT1-A nrPDB
Length = 507
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 119 NCLAEESTIYISEGKVKQDV-VLR---LRDVECG 148
N EE T YI++GK K DV VLR +RD+ECG
Sbjct: 104 NAAIEELTGYITDGK-KDDVEVLRRVMMRDLECG 136
>4V7O-A6 nrPDB
Length = 997
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 29 PYVIVRMGKQKLKTRVIKKTTNPEWNDELTL---SIEDP--------AVPVRLEVYDKDT 77
PY VR KL T +++ +NP +D TL DP +VP +++ Y K
Sbjct: 647 PYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQ 706
Query: 78 F 78
F
Sbjct: 707 F 707
>3CF4-A nrPDB
Length = 807
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 89 DIRPLVEVVKMKIEGVADNTVVKKVVPNRQNCLAEESTIYISEGKVKQDVVL 140
DI P E K+KI +A N + +PNR + +E+ + GK+ V+L
Sbjct: 327 DIVP--EAQKLKIPVIASNPKIMYGLPNRTDADVDETMEELKSGKIPGCVML 376
>1OJL-A nrPDB
Length = 304
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 74 DKDTFIDDAMGNAELDIRPLVEVVKMK------IEGVADNTVVK---KVVPNRQNCLAEE 124
D T D +G DI PL++V ++ ++ V N + +++ LAEE
Sbjct: 96 DGGTLFLDEIG----DISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEE 151
Query: 125 STIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIP 160
+S G+ +QD+ RL V L+ + DIP
Sbjct: 152 ----VSAGRFRQDLYYRLNVVAIEMPSLRQRREDIP 183
>4WSI-A nrPDB
Length = 394
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 102 EGVADNTVVKKVVPNRQNCLA-EESTIYISEGKVKQDVVLRLRDVECGEIELQ 153
EG DN + +VP ++ L EE ++Y K+ ++L + CG+ EL+
Sbjct: 164 EGDEDNQPLAGLVPGKEEILTYEEMSLYHQPANRKRPIIL-IGPQNCGQNELR 215
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4RJ9-A nrPDB 239 5e-64
5A50-A nrPDB 237 2e-63
5A52-A nrPDB 234 2e-62
5IXC-A nrPDB 108 2e-24
5LOB-A nrPDB 106 5e-24
5UE8-A nrPDB 105 7e-24
3RPB-A nrPDB 105 8e-24
2CM5-A nrPDB 105 1e-23
3JZY-A nrPDB 103 3e-23
4LDC-A nrPDB 103 4e-23
4P42-A nrPDB 103 4e-23
4NPK-A nrPDB 102 1e-22
6NYT-A nrPDB 100 5e-22
3PFQ-A nrPDB 96 8e-21
4DNL-A nrPDB 95 1e-20
5YQ3-A nrPDB 94 3e-20
1DQV-A nrPDB 93 7e-20
2UZP-A nrPDB 92 1e-19
1A25-A nrPDB 87 3e-18
1RSY-A nrPDB 85 9e-18
5W5C-F nrPDB 85 1e-17
3NSJ-A nrPDB 84 2e-17
Sequences not found previously or not previously below threshold:
3F01-A nrPDB 86 8e-18
2KI6-A nrPDB 85 1e-17
5H4Y-A nrPDB 77 5e-15
2D8K-A nrPDB 75 2e-14
1RH8-A nrPDB 73 6e-14
6ANK-A nrPDB 73 7e-14
6ANJ-A nrPDB 72 1e-13
2CHD-A nrPDB 69 7e-13
4LCV-A nrPDB 68 2e-12
4MJJ-A nrPDB 68 2e-12
1UGK-A nrPDB 62 1e-10
3N5A-A nrPDB 60 5e-10
1UOW-A nrPDB 59 8e-10
3FDW-A nrPDB 57 3e-09
4TS6-A nrPDB 56 7e-09
1DJX-A nrPDB 56 8e-09
2BWQ-A nrPDB 55 1e-08
2Q3X-A nrPDB 54 3e-08
1CJY-A nrPDB 53 4e-08
1BCI-A nrPDB 52 9e-08
1RLW-A nrPDB 52 1e-07
1W15-A nrPDB 50 4e-07
2DMG-A nrPDB 47 5e-06
2DMH-A nrPDB 44 4e-05
2CJT-A nrPDB 38 0.002
2CJS-A nrPDB 35 0.018
1MM8-A nrPDB 34 0.027
1B7E-A nrPDB 33 0.040
5THM-A nrPDB 31 0.23
5LV1-A nrPDB 29 1.1
5WUS-A nrPDB 29 1.3
1AGX-A nrPDB 28 1.5
4WTV-A nrPDB 28 1.6
1FOU-A nrPDB 27 2.9
2G30-A nrPDB 27 4.5
2ENQ-A nrPDB 27 4.6
1NL3-A nrPDB 27 5.4
5DXT-A nrPDB 27 5.7
4I9T-A nrPDB 27 6.1
>4RJ9-A nrPDB
Length = 165
Score = 239 bits (609), Expect = 5e-64, Method: Composition-based stats.
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS 60
MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS
Sbjct: 1 MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS 60
Query: 61 IEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQNC 120
IEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQNC
Sbjct: 61 IEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQNC 120
Query: 121 LAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV 165
LAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV
Sbjct: 121 LAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV 165
>5A50-A nrPDB
Length = 177
Score = 237 bits (605), Expect = 2e-63, Method: Composition-based stats.
Identities = 97/166 (58%), Positives = 131/166 (78%), Gaps = 1/166 (0%)
Query: 1 MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS 60
++ L+GL+++R+ RGVNLAVRD+ SSDPYV+V+MGKQKLKTRVI K NPEWN++LTLS
Sbjct: 12 LMDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLS 71
Query: 61 IEDPAVPVRLEVYDKDTFI-DDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQN 119
+ D + V L VYD D F DD MG+AE +I P +E ++M+++G+ T+V V P+R+N
Sbjct: 72 VTDSNLTVLLTVYDHDMFSKDDKMGDAEFEISPYIEALRMQLDGLPSGTIVTTVKPSRRN 131
Query: 120 CLAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV 165
CLAEES + +GK+ QD+VLRLR VECGE+E QLQW+D+PGSKG+
Sbjct: 132 CLAEESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDLPGSKGL 177
>5A52-A nrPDB
Length = 168
Score = 234 bits (596), Expect = 2e-62, Method: Composition-based stats.
Identities = 90/168 (53%), Positives = 130/168 (77%), Gaps = 4/168 (2%)
Query: 2 LGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSI 61
+ +LVGL+++ V RGVNLA+RD+ SSDPY++V GKQKLKTRV+K + NPEWND+LTLS+
Sbjct: 1 MENLVGLLRIHVKRGVNLAIRDISSSDPYIVVHCGKQKLKTRVVKHSVNPEWNDDLTLSV 60
Query: 62 EDPAVPVRLEVYDKDTFI-DDAMGNAELDIRPLVEVVKMKIE---GVADNTVVKKVVPNR 117
DP +P++L VYD D DD MG AE I P +E +K + G+ + T++KK+ P+R
Sbjct: 61 TDPNLPIKLTVYDYDLLSADDKMGEAEFHIGPFIEAIKFAHQLGPGLPNGTIIKKIEPSR 120
Query: 118 QNCLAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV 165
+NCL+E S I +++GK+ Q++ LRL+ VECGE+ELQL+W+D+PGS+G+
Sbjct: 121 KNCLSESSHIVLNQGKIVQNMFLRLQHVECGEVELQLEWIDVPGSRGI 168
>5IXC-A nrPDB
Length = 814
Score = 108 bits (269), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 40/170 (23%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRMG---KQKLKTRVIKKTTNPEWNDELTLSIEDP 64
+ VRV+ NL DL S +DPYVI+++ K KT+ + T++P WN+ I+
Sbjct: 28 LTVRVLEARNLRWADLLSEADPYVILQLSTAPGMKFKTKTLTDTSHPVWNEAFRFLIQSQ 87
Query: 65 AVPV-RLEVYDKDTFIDDAM--------------------------GNAELDIRPLVEVV 97
V L +YD+D+ +D + G ELD+ L+E
Sbjct: 88 VKNVLELSIYDEDSVTEDDICFKVLYDISEVLPGKLLRKTFSQSPQGEEELDVEFLMEET 147
Query: 98 KMKIEGVADNTVVKKVVPNRQNCL------AEESTIYISEGKVKQDVVLR 141
+ E + N V +V +CL + + + K++ ++VL+
Sbjct: 148 SDRPENLITNKV---IVARELSCLDVHLDSTGSTAVVADQDKLELELVLK 194
>5LOB-A nrPDB
Length = 162
Score = 106 bits (264), Expect = 5e-24, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVRMG-----KQKLKTRVIKKTTNPEWNDELTLS 60
G + V ++R V+LA D SDP+V + + K K KT++ KKT NPE+N+E
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 61 IEDPA---VPVRLEVYDKDTF-IDDAMGNAELDIRPLVEVVKMKIEGVAD 106
I+ + + V+D D +D +G +L I E +K E + +
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
>5UE8-A nrPDB
Length = 961
Score = 105 bits (263), Expect = 7e-24, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 9 VKVRVVRGVNLAVRD-LRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVP 67
+ + VV L +D SSDPYV V++GK K +T+ I NP W + + +
Sbjct: 163 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 222
Query: 68 VRLEVYDKDTF------------IDDAMGNAELDIRPLVEVVKMKIE 102
+++ V+D+D DD +G +++R L + +
Sbjct: 223 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYN 269
>3RPB-A nrPDB
Length = 140
Score = 105 bits (263), Expect = 8e-24, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVRMG-----KQKLKTRVIKKTTNPEWNDELTLS 60
G + V ++R V+LA D SDP+V + + K K KT++ KKT NPE+N+E
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 61 IEDPA---VPVRLEVYDKDTF-IDDAMGNAELDIRPLVEVVKMKIEGVAD 106
I+ + + V+D D +D +G +L I E +K E + +
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 124
>2CM5-A nrPDB
Length = 166
Score = 105 bits (261), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVRMG-----KQKLKTRVIKKTTNPEWNDELTLS 60
G + V ++R V+LA D SDP+V + + K K KT++ KKT NPE+N+E
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 61 IEDPA---VPVRLEVYDKDTF-IDDAMGNAELDIRPLVEVVKMKIEGVAD 106
I+ + + V+D D +D +G +L I E +K E + +
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
>3JZY-A nrPDB
Length = 510
Score = 103 bits (257), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 6 VGLVKVRVVRGVNL-AVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDP 64
+G + V V+ L A + S+PY + MG Q TR I+ T NP+WN I+D
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 65 AVPVR-LEVYDKDTFI-DDAMGNAELDI 90
V L ++D+D F DD +G E+ +
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPV 473
>4LDC-A nrPDB
Length = 149
Score = 103 bits (256), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIE 62
+ V +VR +LA D SDPYV + K K KT V KKT NPE+N+E I+
Sbjct: 20 LLVGIVRCAHLAAMDANGYSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIK 79
Query: 63 DPA---VPVRLEVYDKDTF-IDDAMGNAELDIRPLVEVVKMKIEGVAD 106
+ + V+D D +D +G L I E +K + + +
Sbjct: 80 HGDLAKKTLEVTVWDYDIGKSNDFIGGVVLGINAKGERLKHWFDCLKN 127
>4P42-A nrPDB
Length = 474
Score = 103 bits (256), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 11/103 (10%)
Query: 7 GLVKVRVVRGVNLAVRDL-------RSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDEL-T 58
G++++ + +L +D SDPY I+R+G Q ++RVIK+ +P+WN+
Sbjct: 197 GVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEA 256
Query: 59 LSIEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKI 101
L E P + +E++D+D DD +G+ +D L+EV K ++
Sbjct: 257 LVYEHPGQELEIELFDEDPDKDDFLGSLMID---LIEVEKERL 296
Score = 46.9 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 8 LVKVRVVRGVNLAVRDLRSSDP--YVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPA 65
L+ + + NL SS+P V + +G + ++++ KT P W + T I +P
Sbjct: 349 LLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPK 408
Query: 66 -VPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIE 102
+ +EV D+ +GN ++ + L+ M +
Sbjct: 409 RQDLEVEVRDEQHQCS--LGNLKVPLSQLLTSEDMTVS 444
>4NPK-A nrPDB
Length = 299
Score = 102 bits (253), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 11/103 (10%)
Query: 7 GLVKVRVVRGVNLAVRDL-------RSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDEL-T 58
G++++ + +L +D SDPY I+R+G Q ++RVIK+ +P+WN+
Sbjct: 24 GVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEA 83
Query: 59 LSIEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKI 101
L E P + +E++D+D DD +G+ +D L+EV K ++
Sbjct: 84 LVYEHPGQELEIELFDEDPDKDDFLGSLMID---LIEVEKERL 123
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 8 LVKVRVVRGVNLAVRDLRSSDP--YVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPA 65
L+ + + NL SS+P V + +G + ++++ KT P W + T I +P
Sbjct: 176 LLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPK 235
Query: 66 -VPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIE 102
+ +EV D+ +GN ++ + L+ M +
Sbjct: 236 RQDLEVEVRDEQHQCS--LGNLKVPLSQLLTSEDMTVS 271
>6NYT-A nrPDB
Length = 148
Score = 99.7 bits (247), Expect = 5e-22, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 9 VKVRVVRGVNLAVRD-LRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVP 67
+ + VV L +D SSDPYV V++GK K +T+ I NP W + + +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 68 VRLEVYDKDTF------------IDDAMGNAELDIRPLVEVVKMKIE 102
+++ V+D+D DD +G +++R L + +
Sbjct: 79 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYN 125
>3PFQ-A nrPDB
Length = 674
Score = 95.9 bits (237), Expect = 8e-21, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 8 LVKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSI 61
++ V V NL D SDPYV +++ + K KT+ IK + NPEWN+ +
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 62 EDPAVPVRLEV--YDKD-TFIDDAMGNAELDIRPLVEVVKMKIEG 103
++ RL V +D D T +D MG+ I E+ K ++G
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGIS---ELQKAGVDG 274
>4DNL-A nrPDB
Length = 140
Score = 95.1 bits (235), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIE 62
+ V V NL D SDPYV +++ + K KT+ I+ T NP+WN+ T ++
Sbjct: 20 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 63 DPAVPVRLEV--YDKD-TFIDDAMGNAELDIRPLVEVVKMKIEG 103
RL V +D D T +D MG+ + E++KM G
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVS---ELMKMPASG 120
>5YQ3-A nrPDB
Length = 162
Score = 93.5 bits (231), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 6 VGLVKVRVVRGVNLAVRDLRSS-DPYVIVRMGKQKLKTRVIKKTT--NPEWNDELTLSIE 62
VG+++V ++ G L D DPYV ++ Q K+ V K+ NP WND+L E
Sbjct: 3 VGILEVSLISGKGLKRSDFLGKIDPYVEIQYKGQTRKSSVAKEDGGRNPTWNDKLKWRAE 62
Query: 63 DPAVPVR----LEVYDKDTF-IDDAMGNAELDIRPLVEV 96
P ++V D DTF DD +G A + ++ L+E+
Sbjct: 63 FPGSGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEM 101
>1DQV-A nrPDB
Length = 296
Score = 92.8 bits (229), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI--- 61
+ VR+++ ++L +D SDPYV + + K+K +T+V +KT NP +N+ S+
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 62 EDPAVPVRLEVYDKDTFI-DDAMGNAELDIRPLVEVVKMKIE 102
E + VYD D F D +G LD L+E+ + +
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLD--NLLELAEQPPD 121
Score = 65.0 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLS 60
GL+ V +++ NL DL SDPYV + +K KT + K T NP +N+ L
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 61 IED---PAVPVRLEVYDKD-TFIDDAMGNAELD 89
+ V + + V D D ++ +G +
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVG 244
>2UZP-A nrPDB
Length = 144
Score = 92.0 bits (227), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIE 62
+ V V NL D SDPYV +++ K KTR +K T NP WN+ +++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 63 DPAVPVRL--EVYDKD-TFIDDAMGNAELDIRPLVEVVKMKIEG 103
V RL EV+D D T +D MG + E++K ++G
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVS---ELLKAPVDG 122
>1A25-A nrPDB
Length = 149
Score = 87.0 bits (214), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 8 LVKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSI 61
++ V V NL D SDPYV +++ + K KT+ IK + NPEWN+ +
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 62 EDPAVPVRLEV--YDKD-TFIDDAMGNAELDIRPL 93
++ RL V +D D T +D MG+ I L
Sbjct: 92 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126
>3F01-A nrPDB
Length = 143
Score = 85.8 bits (211), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI--- 61
+ V +++ L D+ SDPYV V + K+K +T+V +KT NP +N++ T +
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 62 EDPAVPVRLEVYDKDTFI-DDAMGNAELDIRP--LVEVVKMKIE 102
E + + VYD D F D +G ++ + V + +
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
>1RSY-A nrPDB
Length = 152
Score = 85.5 bits (210), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI--- 61
+ V +++ L D+ SDPYV V + K+K +T+V +KT NP +N++ T +
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 62 EDPAVPVRLEVYDKDTFI-DDAMGNAELDIRP--LVEVVKMKIE 102
E + + VYD D F D +G ++ + V + +
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 147
>2KI6-A nrPDB
Length = 128
Score = 85.5 bits (210), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI--- 61
+ V +++ L D+ SDPYV V + K+K +T+V +KT NP +N++ T +
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 62 EDPAVPVRLEVYDKDTFI-DDAMGNAELDIRP--LVEVVKMKIE 102
E + + VYD D F D +G ++ + V + +
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 122
>5W5C-F nrPDB
Length = 282
Score = 85.5 bits (210), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSI--- 61
+ V +++ L D+ SDPYV V + K+K +T+V +KT NP +N++ T +
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 62 EDPAVPVRLEVYDKDTFI-DDAMGNAELDIRP--LVEVVKMKIE 102
E + + VYD D F D +G ++ + V + +
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 122
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLS 60
G + V ++ NL D+ SDPYV + + +K KT + K T NP +N+ +
Sbjct: 148 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 207
Query: 61 I---EDPAVPVRLEVYDKD-TFIDDAMGNAELDIRPLVEVVKMKIEGVAD 106
+ + V V + V D D +DA+G + ++ + +A+
Sbjct: 208 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLAN 257
>3NSJ-A nrPDB
Length = 540
Score = 84.3 bits (207), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 9 VKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS--IEDPAV 66
+ V R +L ++D Y+ V G Q+ +T V+ NP W D++ +
Sbjct: 396 LVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGG 455
Query: 67 PVRLEVYDKD-TFIDDAMGNAE 87
P+R++V+D D + DD +G+ +
Sbjct: 456 PLRVQVWDADYGWDDDLLGSCD 477
>5H4Y-A nrPDB
Length = 150
Score = 76.6 bits (187), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 7 GLVKVRVVRGVNLAVRDLRSS-DPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLS-- 60
G + V +++ + LA DL S DPYV V + +++ +T+V ++T NP + +
Sbjct: 31 GQLLVGILQAMGLAALDLGGSSDPYVRVYLLPDKRRRYETKVHRQTLNPHFGETFAFKVP 90
Query: 61 -IEDPAVPVRLEVYDKDTFI-DDAMGNAELDIR 91
+E + + VYD D F +DA+G + +
Sbjct: 91 YVELGGRVLVMAVYDFDRFSRNDAIGEVRVPMS 123
>2D8K-A nrPDB
Length = 141
Score = 74.7 bits (182), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLS---- 60
+ V++++ L +D SDP+V + + K KL+T+V +K NP WN+
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 61 IEDPAVPVRLEVYDKDTFI-DDAMGNAELDIR--PLVEVVKMKIEGVADN 107
+ + L+V D D F +D +G + + L ++ +
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137
>1RH8-A nrPDB
Length = 142
Score = 72.7 bits (177), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 6 VGLVKVRVVRGVNLAVRDLRS-SDPYVIVRM--------------GKQKLKTRVIKKTTN 50
+G + + +++ NL RD SDP+V V + + K +T+ ++K+ N
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 51 PEWNDELTLSI----EDPAVPVRLEVYDKDTF-IDDAMGNAELDIR 91
PEWN + + + + V+D D F +D +G +D+
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
>6ANK-A nrPDB
Length = 289
Score = 72.7 bits (177), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSIEDP 64
+ V+V++ L +D SDP+V + + K KL+T+V +K NP WN+
Sbjct: 38 LTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 97
Query: 65 AVPVR----LEVYDKDTFI-DDAMGNAELDI 90
V+ L+V D D F +D +G + +
Sbjct: 98 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 128
Score = 59.6 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRMGKQKLKTRVIK-----KTTNPEWNDELTLSI- 61
+ V +++ NL D+ SDPYV V + + + K + NP +N+ I
Sbjct: 169 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 228
Query: 62 --EDPAVPVRLEVYDKDTFI-DDAMGNAELDIRPLVEVVKMKIEGVA 105
+ + + V DKD +D +G L + VK + +A
Sbjct: 229 TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIA 275
>6ANJ-A nrPDB
Length = 148
Score = 72.0 bits (175), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTLSIEDP 64
+ V+V++ L +D SDP+V + + K KL+T+V +K NP WN+
Sbjct: 38 LTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 97
Query: 65 AVPVR----LEVYDKDTFI-DDAMGNAELDI 90
V+ L+V D D F +D +G + +
Sbjct: 98 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 128
>2CHD-A nrPDB
Length = 142
Score = 69.3 bits (168), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTL--- 59
++ ++R L D +DPYV + + KL+T+ ++ T NP WN+ L
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 60 -SIEDPAVPVRLEVYDKDTF-IDDAMGNAELDIRPL 93
+ +R+ V D+D F ++ +G ++ L
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
>4LCV-A nrPDB
Length = 138
Score = 68.1 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLS-I 61
+ + + L D +DPYV + + KL+T+ ++ T NP WN+ LT I
Sbjct: 26 LHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKTLRNTLNPSWNETLTYYGI 85
Query: 62 EDPA---VPVRLEVYDKDTFI-DDAMGNAELDIRPL 93
D +R+ V D+D F ++ +G + ++ L
Sbjct: 86 TDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKL 121
>4MJJ-A nrPDB
Length = 138
Score = 67.7 bits (164), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLS-I 61
+ ++R L D +DPYV + + KLKT+ + T NP WN++LT S I
Sbjct: 27 LHCSILRAKGLKPMDFNGLADPYVKLHLLPGACKANKLKTKTQRNTLNPVWNEDLTYSGI 86
Query: 62 EDPA---VPVRLEVYDKDTFI-DDAMGNAELDIRPL 93
D +R+ V D+D ++ +G + +R L
Sbjct: 87 TDDDITHKVLRIAVCDEDKLSHNEFIGEIRVPLRRL 122
>1UGK-A nrPDB
Length = 138
Score = 62.3 bits (150), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 11 VRVVRGVNLAVRD--LRSSDPYVIVRM---GKQKLKTRVIKKTTNPEWNDELTL----SI 61
V + L D +SDPY+ + + K K+KTRV++KT +P +++ T
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85
Query: 62 EDPAVPVRLEVYDKDTFI-DDAMGNAELDIR 91
+ + + + D F DD +G + +
Sbjct: 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLS 116
>3N5A-A nrPDB
Length = 138
Score = 60.0 bits (144), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRMGKQKLKTRVIK-----KTTNPEWNDELTLSI- 61
+ V +++ NL D+ SDPYV V + + + K + NP +N+ I
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 62 --EDPAVPVRLEVYDKDTFI-DDAMGNAELDIRPLVEVVKMKIEGVA 105
+ + + V DKD +D +G L + VK + +A
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIA 124
>1UOW-A nrPDB
Length = 159
Score = 59.3 bits (142), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 7 GLVKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLS 60
G + V ++ NL D+ SDPYV + + +K KT + K T NP +N+ +
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 61 I---EDPAVPVRLEVYDKD-TFIDDAMGNAELDIRPLVEVVKMKIEGVAD 106
+ + V V + V D D +DA+G + ++ + +A+
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLAN 134
>3FDW-A nrPDB
Length = 148
Score = 57.3 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 9 VKVRVVRGVNLAVRDLRS--SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSI 61
+ V V LA D S+PYV + + K KT + + T NP +++ L I
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEI 84
Query: 62 EDP---AVPVRLEVYDKDTF-IDDAMGNAEL 88
+ ++ V+ F + +G AE+
Sbjct: 85 PESLLAQRTLQFSVWHHGRFGRNTFLGEAEI 115
>4TS6-A nrPDB
Length = 132
Score = 55.8 bits (133), Expect = 7e-09, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 9 VKVRVVRGVNLAVRDLR-SSDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTL--- 59
+ V +V L++R +PY V + K K +T+ + T P W
Sbjct: 25 LIVTLVCATGLSLRQSGAGRNPYAKVFLLPDRSHKSKRRTKTVGTTCEPRWGQTFVYSGL 84
Query: 60 -SIEDPAVPVRLEVYDKDTF-IDDAMGNAELDIR-PLVEVVKMKIE 102
+ + + ++D + +D +G +D+ +++ +
Sbjct: 85 RRCDLNGRLLEVTLWDYVRYGANDFIGEVVIDLAHHILDDEAEWYQ 130
>1DJX-A nrPDB
Length = 624
Score = 55.8 bits (133), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 8 LVKVRVVRGVNLAVRDLRSS---DPYVIVRMGKQ-----KLKTRVIKKTT-NPEWNDELT 58
++VR++ G L + + DP VIV + +T VI NP W+ E
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557
Query: 59 LSIEDPAVP-VRLEVYDKDTFI-DDAMGNAELDIRPLVEVVKMKI 101
+ P + VR V D D+ +D +G + + L + +
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVH 602
>2BWQ-A nrPDB
Length = 129
Score = 55.0 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 9 VKVRVVRGVNLAVR-DLRSSDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTL--- 59
+ V ++ +L R D R +PYV + K K +T+ +KKT P+WN
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 60 -SIEDPAVPVRLEVYDKDTFID---DAMGNAELDIRP-LVEVVKMKIE 102
E + + ++D+ + + +G +++ L++ +
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYK 127
>2Q3X-A nrPDB
Length = 171
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 2 LGHLVGLVKVRVVRGVNLAVRDLRSSDP--YVIVRMGKQ-----KLKTRVIKKTTNPEWN 54
+ G ++V V+R +L + S P YV V + + K KTR+ +KT +P +
Sbjct: 25 MEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQ 84
Query: 55 DELTLSIEDPAVPVRLEVY-DKDTFIDD-AMGNAELDIRPL 93
L +++ V+ D MG A++ + L
Sbjct: 85 QSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125
>1CJY-A nrPDB
Length = 749
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 28 DPYVIVRMGKQ---KLKTRVIKKTTNPEWNDELTLSIEDPAVP--VRLEVYDKDTFIDDA 82
DPYV + + + +TR NP WN+ I DP + + + D + +D+
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDANYVMDET 101
Query: 83 MGNAELDIRPL 93
+G A + +
Sbjct: 102 LGTATFTVSSM 112
>1BCI-A nrPDB
Length = 138
Score = 52.3 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 28 DPYVIVRMGKQ---KLKTRVIKKTTNPEWNDELTLSIEDPAVP--VRLEVYDKDTFIDDA 82
DPYV + + + +TR NP WN+ I DP + + + D + +D+
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDANYVMDET 101
Query: 83 MGNAELDIRPL 93
+G A + +
Sbjct: 102 LGTATFTVSSM 112
>1RLW-A nrPDB
Length = 126
Score = 52.3 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 28 DPYVIVRMGKQ---KLKTRVIKKTTNPEWNDELTLSIEDPAVP--VRLEVYDKDTFIDDA 82
DPYV + + + +TR NP WN+ I DP + + + D + +D+
Sbjct: 28 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDANYVMDET 86
Query: 83 MGNAELDIRPL 93
+G A + +
Sbjct: 87 LGTATFTVSSM 97
>1W15-A nrPDB
Length = 153
Score = 50.0 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 9 VKVRVVRGVNLAVRDLRS-SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIE 62
+ V V++ +L D+ SDPYV V + K KT V K T N +N+ I
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 63 DPAVP---VRLEVYDKDTFI-DDAMGNAELDIRPLVEVVKMKIE 102
++ V V D + ++ +G L E
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKE 135
>2DMG-A nrPDB
Length = 142
Score = 46.5 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 9 VKVRVVRGVNLAVRDLRSSDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIED 63
+ V V NL SDPYV + + + KT V KKT NP ++ S+
Sbjct: 26 LIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85
Query: 64 PAVPVR 69
P V R
Sbjct: 86 PEVQRR 91
>2DMH-A nrPDB
Length = 140
Score = 43.9 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 7 GLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIE---- 62
G+++V V N+ DP V V +K KT+ + NP WN+ L +
Sbjct: 7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66
Query: 63 DPAVPVRLEVYDKDT-FIDDAMGNAELDIRPL 93
D + + + V D +T + +G A + ++ L
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
>2CJT-A nrPDB
Length = 131
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 3 GHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIE 62
G ++ L+ V V + ++ ++ YV +++ K T ++ + P W + I
Sbjct: 1 GGVMSLLCVGVKKAKFDGAQEKFNT--YVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEIN 57
Query: 63 DPAVPVRLEVYDKDTFIDDAMGNAELDIRPL 93
+ + +EV++K D +G + +R +
Sbjct: 58 RLDLGLTVEVWNKGLIWDTMVGTVWIPLRTI 88
>2CJS-A nrPDB
Length = 167
Score = 34.6 bits (78), Expect = 0.018, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 28 DPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRLEVYDKDTFIDDAMGNAE 87
+ YV +++ + T ++ + P W + I + + +EV++K D +G
Sbjct: 33 NTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVW 91
Query: 88 LDIRPL 93
+ +R +
Sbjct: 92 IPLRTI 97
>1MM8-A nrPDB
Length = 481
Score = 34.2 bits (77), Expect = 0.027, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 54 NDELTLSIEDPAVPVRLEVYDKDTFIDD-AMGNAELDIRPLVEVVKMKIEGVADNTVVKK 112
N+ + + P V +Y D + +G ++ I +GV D +K
Sbjct: 208 NERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISI---------PQKGVVDKRGKRK 258
Query: 113 VVPNRQNCLA-EESTIYISEGKVKQDVVLRLRDVECGEIELQLQWV 157
P R+ L+ I + +G + + VL ++ + E L+W+
Sbjct: 259 NRPARKASLSLRSGRITLKQGNITLNAVLA-EEINPPKGETPLKWL 303
>1B7E-A nrPDB
Length = 420
Score = 33.5 bits (75), Expect = 0.040, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 54 NDELTLSIEDPAVPVRLEVYDKDTFIDD-AMGNAELDIRPLVEVVKMKIEGVADNTVVKK 112
N+ + + P V +Y D + +G ++ I +GV D +K
Sbjct: 149 NERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISI---------PQKGVVDKRGKRK 199
Query: 113 VVPNRQNCLA-EESTIYISEGKVKQDVVLRLRDVECGEIELQLQWV 157
P R+ L+ I + +G + + VL ++ + E L+W+
Sbjct: 200 NRPARKASLSLRSGRITLKQGNITLNAVLA-EEINPPKGETPLKWL 244
>5THM-A nrPDB
Length = 533
Score = 31.1 bits (69), Expect = 0.23, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 38 QKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRLEVYDKDT-FIDDAMGNAELDIRPLVEV 96
++ K+ V+ N W + + + ++ D + +GN DI E+
Sbjct: 339 KERKSGVVIDDLNERWLELAPYLLFYRDTKTKKDMDDYSRKIKQEYIGNQRFDIGSYSEL 398
Query: 97 VKMKIEGVADNTVVKKVVPNRQ 118
++ + + N + + +R+
Sbjct: 399 QRLFTDILFKNGTQESLDLHRK 420
>5LV1-A nrPDB
Length = 280
Score = 28.8 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 44 VIKKTTNPEWNDELTLSIEDPAVPVRLEVYDKDTFI 79
++ T +PE +++ + D L+ ++ D F
Sbjct: 211 TMRSTLSPELKEKIRFTFLDLDSDKVLKPFNADGFA 246
>5WUS-A nrPDB
Length = 460
Score = 28.8 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 17/72 (23%)
Query: 70 LEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIEGV--------------ADNTVVKKVVP 115
+ V+ D DD G+ PL+ +K ++ G K P
Sbjct: 334 IMVWSVDM--DDFRGSCGTGKYPLITAMKQELSGYKVKLEYDGPYESSSPTGQYTTK-DP 390
Query: 116 NRQNCLAEESTI 127
+ C E+ I
Sbjct: 391 HEVTCEEEDGHI 402
>1AGX-A nrPDB
Length = 331
Score = 28.4 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 40 LKTRVIKKTTNPEWNDELTLSIEDPAVPVRLEVYDKDTFIDD-AMGNAELDIRPLVEVVK 98
++ V K T N E+N E I+ A+P VY D + D A+ ++ ++
Sbjct: 192 FRSSVKKHTNNSEFNIE---KIQGDALPGVQIVYGSDNMMPDAYQAFAKAGVKAII---- 244
Query: 99 MKIEGVADNTVVKKVVPNRQNCLAEESTIYISEGKVKQDVVLR 141
G + ++ +VP + E+ + +V Q VLR
Sbjct: 245 --HAGTGNGSMANYLVPEVRKLHDEQGLQIVRSSRVAQGFVLR 285
>4WTV-A nrPDB
Length = 514
Score = 28.4 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 27 SDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRLEVY-DKDTFIDDAMGN 85
DP + +G K K+ NP+W + +RL++Y D + + +G+
Sbjct: 48 KDPKRKI-IGVFKPKSEEPYGQLNPKWTKYNIFEMLRIDEGLRLKIYKDTEGYYTIGIGH 106
Query: 86 AELDIRPLVEVVKMKIE---GVADNTVVKKVVPNRQ 118
L P + K +++ G N V+ K +
Sbjct: 107 L-LTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKL 141
>1FOU-A nrPDB
Length = 309
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 15 RGVNLAVRDLRSSD-PYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIE-DPAVPVRLEV 72
++ ++ +D PYV+ ++ QK N WN+ +T ++ + + + +
Sbjct: 189 EALDSDSIEVFKTDAPYVVDKLNAQK----------NAVWNEMMTFKLQTNANLEKKERM 238
Query: 73 YDKDTFIDD 81
+ +D
Sbjct: 239 VTDEVSSND 247
>2G30-A nrPDB
Length = 258
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 85 NAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQNCLAEESTIYISEGKVKQDVVLRLRD 144
+ L + L V+KM+ V + +CL + +++ +GK+++ V L
Sbjct: 104 DVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLATWK 163
Query: 145 VECGEIELQLQ 155
E ELQ Q
Sbjct: 164 DIPNENELQFQ 174
>2ENQ-A nrPDB
Length = 158
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 9 VKVRVVRG--VNLAVRDLRSSDPYVI--VRMGKQKLKTRVIKKTT---NPEWNDELTLSI 61
++++++ VN+ +RD+ YV + G + L V + NP WN+ L I
Sbjct: 11 LRIKILCATYVNVNIRDIDKI--YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDI 68
Query: 62 EDPAVPV 68
P +P
Sbjct: 69 YIPDLPR 75
>1NL3-A nrPDB
Length = 922
Score = 26.5 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 32 IVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRLEVYDKDTFIDDAMGNAELDIR 91
+R + K R+ NPE D+L A V D+ F MG A L +
Sbjct: 68 ELRAKTDEFKRRLA-DQKNPETLDDLLPEAFAVAREAAWRVLDQRPFDVQVMGAAALHLG 126
Query: 92 PLVEVVKMKIEGVADNTVVKKVVPNRQNCLA 122
+ E+ + + V+P N LA
Sbjct: 127 NVAEMKT------GEGKTLTCVLPAYLNALA 151
>5DXT-A nrPDB
Length = 962
Score = 26.5 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 9 VKVRVVRG--VNLAVRDLRSSDPYVI--VRMGKQKLKTRVIKKTT---NPEWNDELTLSI 61
++++++ VN+ +RD+ YV + G + L V + NP WN+ L I
Sbjct: 228 LRIKILCATYVNVNIRDIDKI--YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDI 285
Query: 62 EDPAVPV 68
P +P
Sbjct: 286 YIPDLPR 292
>4I9T-A nrPDB
Length = 310
Score = 26.5 bits (57), Expect = 6.1, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 34 RMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRLEVYDK 75
RMG +K+ T+ +W D T + + L+V D+
Sbjct: 166 RMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDE 207
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.313 0.138 0.381
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,057,387
Number of Sequences: 36641
Number of extensions: 208350
Number of successful extensions: 708
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 125
length of query: 165
length of database: 10,336,785
effective HSP length: 90
effective length of query: 75
effective length of database: 7,039,095
effective search space: 527932125
effective search space used: 527932125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 55 (25.7 bits)