BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q6P587 (224 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6FOH-A nrPDB 463 e-131 1NKQ-A nrPDB 156 7e-39 1GTT-A nrPDB 150 3e-37 1WZO-A nrPDB 142 8e-35 4DBH-A nrPDB 103 7e-23 3RD7-A nrPDB 30 0.61 1SV6-A nrPDB 28 2.2 6DQW-A nrPDB 28 2.6 >6FOH-A nrPDB Length = 224 Score = 463 bits (1191), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL Sbjct: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60 Query: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT Sbjct: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120 Query: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII Sbjct: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180 Query: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY 224 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY Sbjct: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY 224 >1NKQ-A nrPDB Length = 259 Score = 156 bits (394), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 134/248 (54%), Gaps = 40/248 (16%) Query: 12 RFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYA------------PEGS-- 57 + + + I+C+GRNYA H++E+ ++ +P FLKP+++ P S Sbjct: 4 NYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTF 63 Query: 58 -----------PILMPAYTRNLHHELELGVVMGKRCRAV----PEAAAMDYVGGYALCLD 102 PI +P + +HHE+EL +++ K V PE D + G AL LD Sbjct: 64 NGLNEDGTNPGPIFIPRGVK-VHHEIELALIVSKHLSNVTKMKPEEV-YDSISGVALALD 121 Query: 103 MTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHK-----LKLWLKVNGELR 157 +TAR+VQDE KKKGLPWT++K F P+SA V +EK ++ VNG+LR Sbjct: 122 LTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLR 181 Query: 158 QEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGI----HGLV 213 Q+G T+ M+ + I+ ++S +I+LE GDIILTGTP GVG +K D + + +V Sbjct: 182 QDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIV 241 Query: 214 SMTFKVEK 221 M F+ E Sbjct: 242 DMNFECEN 249 >1GTT-A nrPDB Length = 429 Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 106/178 (59%), Gaps = 4/178 (2%) Query: 20 IVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMG 79 + +G NYADH E+ EP++FLK + + P +H+E EL VV+G Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIG 284 Query: 80 KRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCP-VSAFVPKE 138 K+ R V EA AMDYV GY +C D RD + + L KS P +S VPKE Sbjct: 285 KQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNL---RVKSRDGLTPMLSTIVPKE 341 Query: 139 KIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGV 196 IPDPH L L VNGELRQ+G T+ +IFS+P++I+Y+S+ +TL GD+I TGTPKG+ Sbjct: 342 AIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGL 399 Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 17/201 (8%) Query: 20 IVCVGRNYADHVREMRSAVLSEP--------VLFLKPSTAYAPEGSPILMPAYTRNLHHE 71 I V N+ + + A P V F+KP G PI P + L Sbjct: 5 IFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQGEKVLSGA 64 Query: 72 LELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPV 131 + +++GK V E A +Y+ GYAL D++ + +E + P AK CP+ Sbjct: 65 T-VALIVGKTATKVREEDAAEYIAGYALANDVS---LPEESFYR--PAIKAKCRDGFCPI 118 Query: 132 SAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTG 191 V + L ++ ++NG T+ + + ++S +S+ TL GD IL G Sbjct: 119 GETVALSNV---DNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLG 175 Query: 192 TPKGVGPVKENDEIEAGIHGL 212 TP+ ++ D + G Sbjct: 176 TPQARVEIQPGDRVRVLAEGF 196 >1WZO-A nrPDB Length = 246 Score = 142 bits (359), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 3/203 (1%) Query: 19 NIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVM 78 I+ V NYADH E+ + EP LF KP+T+ P +L P R +H+E+EL VV+ Sbjct: 45 KILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVV 104 Query: 79 GKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKE 138 G+ + V A+DYV GY + D+ ARD + P AK P+ F+ E Sbjct: 105 GRPMKRVRAKDALDYVLGYTIANDLVARDYVTNTFR---PPIRAKGRDTFLPLGPFLVVE 161 Query: 139 KIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGP 198 ++ DP L L VNGELRQEG TS M++S+ ++ ++S+ +TLE D++LTGTPKG+ Sbjct: 162 EVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEFISEFMTLEPYDVLLTGTPKGISQ 221 Query: 199 VKENDEIEAGIHGLVSMTFKVEK 221 V+ D + I GL ++ +E+ Sbjct: 222 VRPGDVMRLEIEGLGALENPIEE 244 >4DBH-A nrPDB Length = 288 Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 11/200 (5%) Query: 20 IVCVGRNYADHVREM--RSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVV 77 +V +GRNYADHV E+ +SA P LFLKP TA SPI +P++ + E EL VV Sbjct: 83 VVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELAVV 142 Query: 78 MGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPK 137 +GK C+ V V G+ + D+++RD+Q + W AK P+ ++ Sbjct: 143 IGKPCKNVKADDWKSVVLGFTIINDVSSRDLQFADGQ----WARAKGIDTFGPIGPWIET 198 Query: 138 EKIP---DPHKLKLWLKVNGE--LRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGT 192 + D +K L +GE L+Q+ ++ MI + II +++ +TL GD+I TG+ Sbjct: 199 DINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFITASMTLLPGDVIATGS 258 Query: 193 PKGVGPVKENDEIEAGIHGL 212 P G + + D IE I G+ Sbjct: 259 PAGTEAMVDGDYIEIEIPGI 278 >3RD7-A nrPDB Length = 286 Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 141 PDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKG 195 P P +L++WL+ NGE+ + +S +++Y+S + LE + TP G Sbjct: 173 PPPPRLRIWLRANGEVTDDPLVNSC------VVAYLSALTLLECVMTTMRTTPVG 221 >1SV6-A nrPDB Length = 269 Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 182 LEEGDIILTGTPKGVGPVKENDEIEAGIHGL--VSMTFKVEKPE 223 L GDIILTG + V D EA I G+ V+ TF P+ Sbjct: 222 LRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATFSSAAPK 265 >6DQW-A nrPDB Length = 585 Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Query: 95 GGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNG 154 G +A LD+ D+++ K K + + FT C ++ + D K ++W KV Sbjct: 190 GAFAAYLDIDHPDIEEFLKIKSIGNPIQNLFTGICVPDYWMQEMIDGDADKRQIWAKVLE 249 Query: 155 ELRQEGETSSMIFSIPYII 173 +Q+G +PYI Sbjct: 250 SRQQKG--------LPYIF 260 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6FOH-A nrPDB 355 8e-99 1WZO-A nrPDB 293 5e-80 1NKQ-A nrPDB 274 3e-74 4DBH-A nrPDB 258 1e-69 1GTT-A nrPDB 251 2e-67 Sequences not found previously or not previously below threshold: 2Q18-X nrPDB 67 7e-12 1QCO-A nrPDB 49 2e-06 5TI1-A nrPDB 46 1e-05 4QKU-A nrPDB 45 3e-05 5DFZ-C nrPDB 41 4e-04 1SV6-A nrPDB 39 0.002 2X6F-A nrPDB 31 0.36 4IG9-A nrPDB 30 0.62 4ZZH-A nrPDB 30 0.80 5BTR-A nrPDB 30 0.91 3KGB-A nrPDB 27 6.2 >6FOH-A nrPDB Length = 224 Score = 355 bits (911), Expect = 8e-99, Method: Composition-based stats. Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL Sbjct: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60 Query: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT Sbjct: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120 Query: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII Sbjct: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180 Query: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY 224 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY Sbjct: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY 224 >1WZO-A nrPDB Length = 246 Score = 293 bits (749), Expect = 5e-80, Method: Composition-based stats. Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 3/203 (1%) Query: 19 NIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVM 78 I+ V NYADH E+ + EP LF KP+T+ P +L P R +H+E+EL VV+ Sbjct: 45 KILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVV 104 Query: 79 GKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKE 138 G+ + V A+DYV GY + D+ ARD + P AK P+ F+ E Sbjct: 105 GRPMKRVRAKDALDYVLGYTIANDLVARDYVTNTFR---PPIRAKGRDTFLPLGPFLVVE 161 Query: 139 KIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGP 198 ++ DP L L VNGELRQEG TS M++S+ ++ ++S+ +TLE D++LTGTPKG+ Sbjct: 162 EVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEFISEFMTLEPYDVLLTGTPKGISQ 221 Query: 199 VKENDEIEAGIHGLVSMTFKVEK 221 V+ D + I GL ++ +E+ Sbjct: 222 VRPGDVMRLEIEGLGALENPIEE 244 >1NKQ-A nrPDB Length = 259 Score = 274 bits (700), Expect = 3e-74, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 38/247 (15%) Query: 12 RFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYA------------PEGS-- 57 + + + I+C+GRNYA H++E+ ++ +P FLKP+++ P S Sbjct: 4 NYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTF 63 Query: 58 -----------PILMPAYTRNLHHELELGVVMGKRCRAV---PEAAAMDYVGGYALCLDM 103 PI +P + +HHE+EL +++ K V D + G AL LD+ Sbjct: 64 NGLNEDGTNPGPIFIPRGVK-VHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDL 122 Query: 104 TARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHK-----LKLWLKVNGELRQ 158 TAR+VQDE KKKGLPWT++K F P+SA V +EK ++ VNG+LRQ Sbjct: 123 TARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQ 182 Query: 159 EGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGI----HGLVS 214 +G T+ M+ + I+ ++S +I+LE GDIILTGTP GVG +K D + + +V Sbjct: 183 DGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVD 242 Query: 215 MTFKVEK 221 M F+ E Sbjct: 243 MNFECEN 249 >4DBH-A nrPDB Length = 288 Score = 258 bits (660), Expect = 1e-69, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 107/208 (51%), Gaps = 11/208 (5%) Query: 19 NIVCVGRNYADHVREM--RSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGV 76 +V +GRNYADHV E+ +SA P LFLKP TA SPI +P++ + E EL V Sbjct: 82 KVVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELAV 141 Query: 77 VMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVP 136 V+GK C+ V V G+ + D+++RD+Q + W AK P+ ++ Sbjct: 142 VIGKPCKNVKADDWKSVVLGFTIINDVSSRDLQFADGQ----WARAKGIDTFGPIGPWIE 197 Query: 137 KEKIP---DPHKLKLWLKVNGE--LRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTG 191 + D +K L +GE L+Q+ ++ MI + II +++ +TL GD+I TG Sbjct: 198 TDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFITASMTLLPGDVIATG 257 Query: 192 TPKGVGPVKENDEIEAGIHGLVSMTFKV 219 +P G + + D IE I G+ + V Sbjct: 258 SPAGTEAMVDGDYIEIEIPGIGKLGNPV 285 >1GTT-A nrPDB Length = 429 Score = 251 bits (640), Expect = 2e-67, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 106/179 (59%), Gaps = 4/179 (2%) Query: 20 IVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMG 79 + +G NYADH E+ EP++FLK + + P +H+E EL VV+G Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIG 284 Query: 80 KRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCP-VSAFVPKE 138 K+ R V EA AMDYV GY +C D RD + + L KS P +S VPKE Sbjct: 285 KQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNL---RVKSRDGLTPMLSTIVPKE 341 Query: 139 KIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVG 197 IPDPH L L VNGELRQ+G T+ +IFS+P++I+Y+S+ +TL GD+I TGTPKG+ Sbjct: 342 AIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLS 400 Score = 126 bits (317), Expect = 6e-30, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 9/183 (4%) Query: 37 AVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGG 96 A V F+KP G PI P + + +++GK V E A +Y+ G Sbjct: 30 APPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLSGATVALIVGKTATKVREEDAAEYIAG 88 Query: 97 YALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGEL 156 YAL D++ + + + P AK CP+ V + + L ++ ++NG Sbjct: 89 YALANDVSLPE--ESFYR---PAIKAKCRDGFCPIGETV---ALSNVDNLTIYTEINGRP 140 Query: 157 RQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMT 216 T+ + + ++S +S+ TL GD IL GTP+ ++ D + G + Sbjct: 141 ADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLE 200 Query: 217 FKV 219 V Sbjct: 201 NPV 203 >2Q18-X nrPDB Length = 293 Score = 66.6 bits (161), Expect = 7e-12, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 20/188 (10%) Query: 42 PVLFLKP-STAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALC 100 P +F K G I + + + E EL VV+ + + GY + Sbjct: 113 PEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVL----------DSNGKILGYTIM 162 Query: 101 LDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDP--HKLKLWLKVNGELRQ 158 D++ARD++ E + A PV V ++I +P + L + G + Sbjct: 163 DDVSARDLEAENPLYLPQSKIYAGCCAFGPV--IVTSDEIKNPYSLDITLKIVREGRVFF 220 Query: 159 EG--ETSSMIFSIPYIISYVSKIITLEEGDIILTGT---PKGVGPVKENDEIEAGIHGLV 213 EG T+ M I I Y+ + + +G I+ TGT P +K+ D +E I + Sbjct: 221 EGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIG 280 Query: 214 SMTFKVEK 221 ++ V+K Sbjct: 281 TLITPVKK 288 >1QCO-A nrPDB Length = 423 Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 32/201 (15%) Query: 47 KPSTAYAPEGSPILMPAYTRNLHHELELGVVMG---KRCRAVPEAAAMDYVGGYALCLDM 103 +P P+ S + R L ELE+ +G + +P + A +++ G L D Sbjct: 177 RPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDW 236 Query: 104 TARDVQDECKKKGLPWTLAKSF-TASCP-------VSAFVPKEKIPDPHKL--------- 146 +ARD+Q L L KSF T P + FV DP L Sbjct: 237 SARDIQQWEYVP-LGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPY 295 Query: 147 ----KLWLKVNGE-LRQEGETSSMIFS------IPYIISYVSKIITLEEGDIILTGTPKG 195 L + + GE + Q F + + + L GD++ +GT G Sbjct: 296 TFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISG 355 Query: 196 VGPVKENDEIEAGIHGLVSMT 216 P +E G ++ Sbjct: 356 SDPESFGSMLELSWKGTKAID 376 >5TI1-A nrPDB Length = 444 Score = 46.2 bits (108), Expect = 1e-05, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 25/169 (14%) Query: 11 SRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAY------ 64 + F+ ++ VG + D + P+ + +++ G+P+ P Sbjct: 152 TDFYSSKEHATNVGSMFRDPKNALLPNWSEMPIGYNGRASSVVVSGTPVRRPNGQLKLPD 211 Query: 65 --------TRNLHHELELGVVMGKR---CRAVPEAAAMDYVGGYALCLDMTARDVQDECK 113 R L ELE G V+G V A A ++ G L D +ARD+Q Sbjct: 212 QERPVFGACRKLDIELETGFVIGAGNALGEPVTCADAEAHIFGMVLLNDWSARDIQQWEY 271 Query: 114 KKGLPWTLAKSFTASCP-------VSAFVPKEKIPDPHKLKLWLKVNGE 155 P+ T P + F + DP L +L+ +GE Sbjct: 272 VPLGPFNAKTFATTISPWIVTLDALEPFRVAQPAQDPQPL-AYLRHDGE 319 >4QKU-A nrPDB Length = 441 Score = 44.7 bits (104), Expect = 3e-05, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 20/144 (13%) Query: 11 SRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAY------ 64 + F+ ++ VG + D + P+ + +++ G+P+ P Sbjct: 148 TDFYSSKEHATNVGSMFRDPKNALLPNWSEMPIGYNGRASSVVVSGTPVRRPNGQLKLPD 207 Query: 65 --------TRNLHHELELGVVMGKR---CRAVPEAAAMDYVGGYALCLDMTARDVQDECK 113 R L ELE G ++GK + A ++ G L D +ARD+Q Sbjct: 208 QERPVFGACRKLDIELETGFIVGKGNALGEPIACEDAEAHIFGMVLLNDWSARDIQQWEY 267 Query: 114 KKGLPWTLAKSFTASCPVSAFVPK 137 L +K F + +S ++ Sbjct: 268 VP-LGPFNSKGFATT--ISPWIVT 288 >5DFZ-C nrPDB Length = 875 Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%) Query: 131 VSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILT 190 +S K L KV +LRQ+ +I + ++ + + L I+ T Sbjct: 604 LSPLKITFKTTLNQPYHLMFKVGDDLRQDQLVVQIISLMNELLKNENVDLKLTPYKILAT 663 Query: 191 GTPKGVGPVKENDEIEA------GIHGLVSMTFKVEK 221 G +G ND + + GI G + + + E Sbjct: 664 GPQEGAIEFIPNDTLASILSKYHGILGYLKLHYPDEN 700 >1SV6-A nrPDB Length = 269 Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 14/208 (6%) Query: 17 GKNIVC--VGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELEL 74 G+ +V VG + +++ LF + + I + E E+ Sbjct: 53 GRRVVGRKVGLTHPKVQQQLGVDQPDFGTLF---ADMCYGDNEIIPFSRVLQP-RIEAEI 108 Query: 75 GVVMGK--RCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVS 132 +V+ + + + + L++ ++D + S + Sbjct: 109 ALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRIRDWSIQFVDTVADNASCGVYV-IG 167 Query: 133 AFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMI-FSIPYIISYVSKIITL-EE---GDI 187 + D + + N E G S + + + K+ +L E GDI Sbjct: 168 GPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDI 227 Query: 188 ILTGTPKGVGPVKENDEIEAGIHGLVSM 215 ILTG + V D EA I G+ S+ Sbjct: 228 ILTGALGPMVAVNAGDRFEAHIEGIGSV 255 >2X6F-A nrPDB Length = 696 Score = 31.2 bits (69), Expect = 0.36, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 6/87 (6%) Query: 144 HKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKEND 203 H+ K +LRQ+ MI + ++ + + L ++ T + G ++ Sbjct: 438 HEYAAIFKHGDDLRQDQLILQMITLMDKLLRRENLDLKLTPYKVLATSSKHGFLQYVDSC 497 Query: 204 EI------EAGIHGLVSMTFKVEKPEY 224 + E IH + Y Sbjct: 498 TVAEVLAREGNIHNFFRKHHPCDNGPY 524 >4IG9-A nrPDB Length = 281 Score = 30.4 bits (67), Expect = 0.62, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 38 VLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEA 88 EP+ +KP + E P + E++L +V+G + P A Sbjct: 170 PADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVA 220 >4ZZH-A nrPDB Length = 356 Score = 30.0 bits (66), Expect = 0.80, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 38 VLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEA 88 EP+ +KP + E P + E++L +V+G + P A Sbjct: 217 PADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVA 267 >5BTR-A nrPDB Length = 397 Score = 30.0 bits (66), Expect = 0.91, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 38 VLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEA 88 EP+ +KP + E P + E++L +V+G + P A Sbjct: 259 PADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVA 309 >3KGB-A nrPDB Length = 294 Score = 27.0 bits (58), Expect = 6.2, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%) Query: 27 YADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHEL 72 Y DHV +R + P F + P P + + EL Sbjct: 237 YLDHVDSLRQQIQRPPRAF---PKLFVSPKGPRTEPEHFQYEDFEL 279 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.134 0.355 Lambda K H 0.267 0.0412 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,750,208 Number of Sequences: 36641 Number of extensions: 340522 Number of successful extensions: 929 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 880 Number of HSP's gapped (non-prelim): 32 length of query: 224 length of database: 10,336,785 effective HSP length: 93 effective length of query: 131 effective length of database: 6,929,172 effective search space: 907721532 effective search space used: 907721532 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 57 (26.6 bits)