BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q6NXT2 (135 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4Z5T-A nrPDB 273 1e-74 3WTP-E nrPDB 258 7e-70 4KUD-A nrPDB 236 2e-63 5ZBX-A nrPDB 217 1e-57 5AY8-A nrPDB 210 1e-55 3W98-A nrPDB 198 5e-52 6FTX-E nrPDB 189 3e-49 5MLU-A nrPDB 189 3e-49 5BO0-A nrPDB 155 4e-39 2YFV-A nrPDB 129 3e-31 2YFW-A nrPDB 124 1e-29 2L5A-A nrPDB 112 6e-26 6BUZ-A nrPDB 106 3e-24 3AN2-A nrPDB 106 3e-24 3R45-A nrPDB 106 3e-24 3NQJ-A nrPDB 91 2e-19 2LY8-A nrPDB 77 2e-15 5A2P-A nrPDB 31 0.18 6F3T-F nrPDB 31 0.18 5G1D-A nrPDB 30 0.21 6MZM-L nrPDB 30 0.26 4A5P-A nrPDB 30 0.43 3WC1-A nrPDB 28 0.98 1WSR-A nrPDB 28 1.0 1TAF-A nrPDB 28 1.0 4EYU-A nrPDB 28 1.5 4YNN-A nrPDB 26 4.1 2FRX-A nrPDB 26 4.1 1R6J-A nrPDB 26 4.3 4YO1-A nrPDB 26 6.1 >4Z5T-A nrPDB Length = 138 Score = 273 bits (699), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/135 (100%), Positives = 135/135 (100%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL 60 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL 63 Query: 61 LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM 120 LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM Sbjct: 64 LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM 123 Query: 121 PKDIQLARRIRGERA 135 PKDIQLARRIRGERA Sbjct: 124 PKDIQLARRIRGERA 138 >3WTP-E nrPDB Length = 140 Score = 258 bits (658), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 130/136 (95%), Positives = 131/136 (96%), Gaps = 1/136 (0%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59 MARTKQTARKSTGGKAPRKQLATKAARKS PST GVK PHRYRPGTVALREIRRYQKSTE Sbjct: 5 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 64 Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119 LLIRKLPFQRLVREIAQDF TDLRFQSAA+GALQEASEAYLVGL EDTNLCAIHAKRVTI Sbjct: 65 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 124 Query: 120 MPKDIQLARRIRGERA 135 MPKDIQLARRIRGERA Sbjct: 125 MPKDIQLARRIRGERA 140 >4KUD-A nrPDB Length = 136 Score = 236 bits (602), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 117/136 (86%), Positives = 126/136 (92%), Gaps = 1/136 (0%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59 MARTKQTARKSTGGKAPRKQLA+KAARKS PST GVK PHRY+PGTVALREIRR+QKSTE Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTE 60 Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119 LLIRKLPFQRLVREIAQDF TDLRFQS+A+GALQE+ EAYLV L EDTNL AIHAKRVTI Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTI 120 Query: 120 MPKDIQLARRIRGERA 135 KDI+LARR+RGER+ Sbjct: 121 QKKDIKLARRLRGERS 136 >5ZBX-A nrPDB Length = 141 Score = 217 bits (553), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/138 (81%), Positives = 120/138 (86%), Gaps = 3/138 (2%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59 MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63 Query: 60 LLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRV 117 LLIRKLPFQRLVREI QDF D +Q+ A+ ALQEA+EA+LV L ED L +HAKRV Sbjct: 64 LLIRKLPFQRLVREICQDFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAKRV 123 Query: 118 TIMPKDIQLARRIRGERA 135 TIMPKDIQLARRIRGERA Sbjct: 124 TIMPKDIQLARRIRGERA 141 >5AY8-A nrPDB Length = 139 Score = 210 bits (535), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 1/134 (0%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59 MARTKQTARK+T +APRK LATKAA K P T G+K PHRY+PGT+ALREIR+YQKST+ Sbjct: 4 MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 63 Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119 LL+RKLPFQRLVREIAQ + DLRFQSAA+GALQEASEAYLV L EDTNLCAIHA+RVTI Sbjct: 64 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 123 Query: 120 MPKDIQLARRIRGE 133 MP+D+QLARR+R E Sbjct: 124 MPRDMQLARRLRRE 137 >3W98-A nrPDB Length = 112 Score = 198 bits (504), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 99/108 (91%), Positives = 101/108 (93%), Gaps = 1/108 (0%) Query: 29 STPSTCGVK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSA 87 S P+T GVK PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF TDLRFQS+ Sbjct: 5 SAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS 64 Query: 88 AVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135 AV ALQEA EAYLVGL EDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 65 AVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 112 >6FTX-E nrPDB Length = 110 Score = 189 bits (480), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 92/97 (94%), Positives = 93/97 (95%) Query: 39 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEA 98 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEA Sbjct: 14 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 73 Query: 99 YLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135 YLV L EDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 74 YLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 110 >5MLU-A nrPDB Length = 97 Score = 189 bits (480), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 92/97 (94%), Positives = 93/97 (95%) Query: 39 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEA 98 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEA Sbjct: 1 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 60 Query: 99 YLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135 YLV L EDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 61 YLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 97 >5BO0-A nrPDB Length = 80 Score = 155 bits (392), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 76/80 (95%), Positives = 77/80 (96%) Query: 56 KSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAK 115 KSTELLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEAYLVGL EDTNLCAIHAK Sbjct: 1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 60 Query: 116 RVTIMPKDIQLARRIRGERA 135 RVTIMPKDIQLARRIRGERA Sbjct: 61 RVTIMPKDIQLARRIRGERA 80 >2YFV-A nrPDB Length = 100 Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 63/95 (66%), Positives = 78/95 (82%), Gaps = 3/95 (3%) Query: 40 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTD---LRFQSAAVGALQEAS 96 RY+P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+ ALQEAS Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEAS 65 Query: 97 EAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIR 131 EAYLVGLLE TNL A+HAKR+TIM KD+QLARRIR Sbjct: 66 EAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100 >2YFW-A nrPDB Length = 92 Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 61/90 (67%), Positives = 75/90 (83%), Gaps = 3/90 (3%) Query: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTD---LRFQSAAVGALQEASEAYLVGL 103 AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+ ALQEASEAYLVGL Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60 Query: 104 LEDTNLCAIHAKRVTIMPKDIQLARRIRGE 133 LE TNL A+HAKR+TIM KD+QLARRIRG+ Sbjct: 61 LEHTNLLALHAKRITIMRKDMQLARRIRGQ 90 >2L5A-A nrPDB Length = 235 Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 54/77 (70%), Positives = 64/77 (83%), Gaps = 3/77 (3%) Query: 60 LLIRKLPFQRLVREIAQDFNT---DLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKR 116 LLI K+PF RLV+E+ +F T DLR+QS A+ ALQEASEAYLVGLLE TNL A+HAKR Sbjct: 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69 Query: 117 VTIMPKDIQLARRIRGE 133 +TIM KD+QLARRIRG+ Sbjct: 70 ITIMKKDMQLARRIRGQ 86 >6BUZ-A nrPDB Length = 160 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 54/87 (62%), Positives = 64/87 (73%), Gaps = 2/87 (2%) Query: 48 LREIRRYQKSTELLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLE 105 L+EIR+ QKST LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV L E Sbjct: 68 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 127 Query: 106 DTNLCAIHAKRVTIMPKDIQLARRIRG 132 D L +HA RVT+ PKD+QLARRIRG Sbjct: 128 DAYLLTLHAGRVTLFPKDVQLARRIRG 154 >3AN2-A nrPDB Length = 143 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 54/87 (62%), Positives = 64/87 (73%), Gaps = 2/87 (2%) Query: 48 LREIRRYQKSTELLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLE 105 L+EIR+ QKST LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV L E Sbjct: 51 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 110 Query: 106 DTNLCAIHAKRVTIMPKDIQLARRIRG 132 D L +HA RVT+ PKD+QLARRIRG Sbjct: 111 DAYLLTLHAGRVTLFPKDVQLARRIRG 137 >3R45-A nrPDB Length = 156 Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 54/87 (62%), Positives = 64/87 (73%), Gaps = 2/87 (2%) Query: 48 LREIRRYQKSTELLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLE 105 L+EIR+ QKST LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV L E Sbjct: 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 123 Query: 106 DTNLCAIHAKRVTIMPKDIQLARRIRG 132 D L +HA RVT+ PKD+QLARRIRG Sbjct: 124 DAYLLTLHAGRVTLFPKDVQLARRIRG 150 >3NQJ-A nrPDB Length = 82 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 2/75 (2%) Query: 60 LLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRV 117 LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV L ED L +HA RV Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61 Query: 118 TIMPKDIQLARRIRG 132 T+ PKD+QLARRIRG Sbjct: 62 TLFPKDVQLARRIRG 76 >2LY8-A nrPDB Length = 121 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%) Query: 61 LIRKLPFQRLVREIAQDFNT---DLRFQSAAVGALQEASEAYLVGLLEDTNLCAIH 113 LI K+PF RLV+E+ +F T DLR+QS A+ ALQEASEAYLVGLLE TNL A+H Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56 >5A2P-A nrPDB Length = 163 Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 54 YQKSTELLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCA 111 + + + IR PF+R V + +D + F+S + ++ + S A GLL D ++C Sbjct: 73 FGEKITMTIRDRPFERTVT-MHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHICE 131 Query: 112 IHAKRVTIMPKDIQLA 127 I+ + V I KD Q+A Sbjct: 132 INGQNV-IGLKDAQIA 146 >6F3T-F nrPDB Length = 116 Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust. Identities = 12/52 (23%), Positives = 30/52 (57%) Query: 84 FQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135 ++ + + E + Y+ +L+D + + HAK+ T+ D++LA + R +++ Sbjct: 27 YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQS 78 >5G1D-A nrPDB Length = 201 Score = 30.4 bits (67), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 54 YQKSTELLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCA 111 + + + IR PF+R V + +D + F+S + ++ + S A GLL D ++C Sbjct: 85 FGEKITMTIRDRPFERTVT-MHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHICE 143 Query: 112 IHAKRVTIMPKDIQLA 127 I+ + V I KD Q+A Sbjct: 144 INGQNV-IGLKDAQIA 158 >6MZM-L nrPDB Length = 264 Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust. Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 69 RLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLAR 128 +++ +I +D ++ + + E + Y+ +L+D + + HAK+ T+ D++LA Sbjct: 17 QMMAQILKDMGI-TEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAI 75 Query: 129 RIRGERA 135 + R +++ Sbjct: 76 QCRADQS 82 >4A5P-A nrPDB Length = 383 Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLL 104 ALRE+R +K+ LL+ + +R V+ + D RF+S V + E EAY + +L Sbjct: 329 ALRELRNAKKNFVLLV-SVDIRRFVKRL-----IDNRFKSILVISYAEIDEAYTINVL 380 >3WC1-A nrPDB Length = 271 Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Query: 10 KSTGGKAPRKQLATKAARKSTP--STCGVKPHR----YRPGTVALREIRRYQKSTELLIR 63 K T +A ++ + T A+ K+ CGV + Y+ GT+ +RE Y+ E + Sbjct: 174 KMTPQQAEQRLMGTVASDKNEILFKECGVNYNNESEMYKKGTIIVREFENYETEDEAELS 233 Query: 64 KLPFQRL 70 K QRL Sbjct: 234 KRQVQRL 240 >1WSR-A nrPDB Length = 375 Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 35 GVKPHRY-RPGTVALREIRRYQKSTELLIRKLPF 67 G P Y RPGT+ L E+RR Q+ ++ K+PF Sbjct: 335 GYVPCEYSRPGTMLLVEVRRKQQMA--VVSKMPF 366 >1TAF-A nrPDB Length = 68 Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 26/47 (55%) Query: 84 FQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRI 130 ++ V L E + Y+ +L+D + A HA++ TI D++LA + Sbjct: 19 YEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 >4EYU-A nrPDB Length = 486 Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Query: 20 QLATKAARKSTPSTCGVKP---HRYRPGT-VALREIRRYQKSTELLIRKLPFQRL 70 Q TKAARKS P+T G H + GT + L + +R++ + L++ F R+ Sbjct: 145 QGPTKAARKSAPATGGGSSGSHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRV 199 >4YNN-A nrPDB Length = 448 Score = 26.2 bits (56), Expect = 4.1, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%) Query: 68 QRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVT 118 Q L E+AQ FQ A V + + S A L GL + I+ ++T Sbjct: 262 QHLTPELAQSMGYAEDFQGALVSQVNQNSPAQLAGLKSGDVIVQINDTKIT 312 >2FRX-A nrPDB Length = 479 Score = 26.2 bits (56), Expect = 4.1, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 13/64 (20%) Query: 49 REIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGAL-------------QEA 95 +E+ + E LI K+ F RL ++A+ N R+Q AV AL QEA Sbjct: 362 KELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALASPDNMNAFELTPQEA 421 Query: 96 SEAY 99 E Y Sbjct: 422 EEWY 425 >1R6J-A nrPDB Length = 82 Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 84 FQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLA 127 F++ + ++ + S A GLL + N+C I+ + V I KD Q+A Sbjct: 22 FKNGKITSIVKDSSAARNGLLTEHNICEINGQNV-IGLKDSQIA 64 >4YO1-A nrPDB Length = 351 Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 23/51 (45%) Query: 68 QRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVT 118 Q L E+AQ FQ A V + + S A L GL + I+ ++T Sbjct: 262 QHLTPELAQSMGYAEDFQGALVSQVNQNSPAQLAGLKSGDVIVQINDTKIT 312 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4Z5T-A nrPDB 210 2e-55 3WTP-E nrPDB 206 2e-54 5ZBX-A nrPDB 199 3e-52 4KUD-A nrPDB 187 1e-48 5AY8-A nrPDB 185 6e-48 3W98-A nrPDB 176 3e-45 6FTX-E nrPDB 157 2e-39 5MLU-A nrPDB 157 2e-39 5BO0-A nrPDB 133 3e-32 2YFV-A nrPDB 130 1e-31 2YFW-A nrPDB 128 8e-31 6BUZ-A nrPDB 125 8e-30 3R45-A nrPDB 124 1e-29 2L5A-A nrPDB 123 2e-29 3AN2-A nrPDB 123 2e-29 3NQJ-A nrPDB 115 6e-27 2LY8-A nrPDB 86 5e-18 Sequences not found previously or not previously below threshold: 2K3Y-A nrPDB 34 0.017 4EYU-A nrPDB 33 0.043 4A5P-A nrPDB 32 0.12 2FRX-A nrPDB 31 0.14 1WSR-A nrPDB 29 0.51 3U5R-E nrPDB 29 0.59 5CJH-A nrPDB 29 0.66 5L9T-R nrPDB 29 0.67 3WC1-A nrPDB 29 0.74 4E44-A nrPDB 28 0.99 2IDC-A nrPDB 28 1.2 2NZ2-A nrPDB 28 1.4 4NE3-A nrPDB 27 2.6 1KU5-A nrPDB 27 2.7 4C5U-A nrPDB 27 3.1 5XXU-I nrPDB 25 6.9 4NE1-C nrPDB 25 7.1 1J93-A nrPDB 25 7.3 1B67-A nrPDB 25 8.0 CONVERGED! >4Z5T-A nrPDB Length = 138 Score = 210 bits (534), Expect = 2e-55, Method: Composition-based stats. Identities = 135/135 (100%), Positives = 135/135 (100%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL 60 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL 63 Query: 61 LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM 120 LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM Sbjct: 64 LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM 123 Query: 121 PKDIQLARRIRGERA 135 PKDIQLARRIRGERA Sbjct: 124 PKDIQLARRIRGERA 138 >3WTP-E nrPDB Length = 140 Score = 206 bits (525), Expect = 2e-54, Method: Composition-based stats. Identities = 130/136 (95%), Positives = 131/136 (96%), Gaps = 1/136 (0%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59 MARTKQTARKSTGGKAPRKQLATKAARKS PST GVK PHRYRPGTVALREIRRYQKSTE Sbjct: 5 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 64 Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119 LLIRKLPFQRLVREIAQDF TDLRFQSAA+GALQEASEAYLVGL EDTNLCAIHAKRVTI Sbjct: 65 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 124 Query: 120 MPKDIQLARRIRGERA 135 MPKDIQLARRIRGERA Sbjct: 125 MPKDIQLARRIRGERA 140 >5ZBX-A nrPDB Length = 141 Score = 199 bits (506), Expect = 3e-52, Method: Composition-based stats. Identities = 113/138 (81%), Positives = 120/138 (86%), Gaps = 3/138 (2%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59 MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63 Query: 60 LLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRV 117 LLIRKLPFQRLVREI QDF D +Q+ A+ ALQEA+EA+LV L ED L +HAKRV Sbjct: 64 LLIRKLPFQRLVREICQDFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAKRV 123 Query: 118 TIMPKDIQLARRIRGERA 135 TIMPKDIQLARRIRGERA Sbjct: 124 TIMPKDIQLARRIRGERA 141 >4KUD-A nrPDB Length = 136 Score = 187 bits (475), Expect = 1e-48, Method: Composition-based stats. Identities = 117/136 (86%), Positives = 126/136 (92%), Gaps = 1/136 (0%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59 MARTKQTARKSTGGKAPRKQLA+KAARKS PST GVK PHRY+PGTVALREIRR+QKSTE Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTE 60 Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119 LLIRKLPFQRLVREIAQDF TDLRFQS+A+GALQE+ EAYLV L EDTNL AIHAKRVTI Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTI 120 Query: 120 MPKDIQLARRIRGERA 135 KDI+LARR+RGER+ Sbjct: 121 QKKDIKLARRLRGERS 136 >5AY8-A nrPDB Length = 139 Score = 185 bits (469), Expect = 6e-48, Method: Composition-based stats. Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 1/134 (0%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59 MARTKQTARK+T +APRK LATKAA K P T G+K PHRY+PGT+ALREIR+YQKST+ Sbjct: 4 MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 63 Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119 LL+RKLPFQRLVREIAQ + DLRFQSAA+GALQEASEAYLV L EDTNLCAIHA+RVTI Sbjct: 64 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 123 Query: 120 MPKDIQLARRIRGE 133 MP+D+QLARR+R E Sbjct: 124 MPRDMQLARRLRRE 137 >3W98-A nrPDB Length = 112 Score = 176 bits (446), Expect = 3e-45, Method: Composition-based stats. Identities = 99/108 (91%), Positives = 101/108 (93%), Gaps = 1/108 (0%) Query: 29 STPSTCGVK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSA 87 S P+T GVK PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF TDLRFQS+ Sbjct: 5 SAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS 64 Query: 88 AVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135 AV ALQEA EAYLVGL EDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 65 AVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 112 >6FTX-E nrPDB Length = 110 Score = 157 bits (396), Expect = 2e-39, Method: Composition-based stats. Identities = 92/97 (94%), Positives = 93/97 (95%) Query: 39 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEA 98 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEA Sbjct: 14 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 73 Query: 99 YLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135 YLV L EDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 74 YLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 110 >5MLU-A nrPDB Length = 97 Score = 157 bits (396), Expect = 2e-39, Method: Composition-based stats. Identities = 92/97 (94%), Positives = 93/97 (95%) Query: 39 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEA 98 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEA Sbjct: 1 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 60 Query: 99 YLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135 YLV L EDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 61 YLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 97 >5BO0-A nrPDB Length = 80 Score = 133 bits (334), Expect = 3e-32, Method: Composition-based stats. Identities = 76/80 (95%), Positives = 77/80 (96%) Query: 56 KSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAK 115 KSTELLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEAYLVGL EDTNLCAIHAK Sbjct: 1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 60 Query: 116 RVTIMPKDIQLARRIRGERA 135 RVTIMPKDIQLARRIRGERA Sbjct: 61 RVTIMPKDIQLARRIRGERA 80 >2YFV-A nrPDB Length = 100 Score = 130 bits (328), Expect = 1e-31, Method: Composition-based stats. Identities = 63/95 (66%), Positives = 78/95 (82%), Gaps = 3/95 (3%) Query: 40 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTD---LRFQSAAVGALQEAS 96 RY+P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+ ALQEAS Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEAS 65 Query: 97 EAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIR 131 EAYLVGLLE TNL A+HAKR+TIM KD+QLARRIR Sbjct: 66 EAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100 >2YFW-A nrPDB Length = 92 Score = 128 bits (321), Expect = 8e-31, Method: Composition-based stats. Identities = 61/90 (67%), Positives = 75/90 (83%), Gaps = 3/90 (3%) Query: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTD---LRFQSAAVGALQEASEAYLVGL 103 AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+ ALQEASEAYLVGL Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60 Query: 104 LEDTNLCAIHAKRVTIMPKDIQLARRIRGE 133 LE TNL A+HAKR+TIM KD+QLARRIRG+ Sbjct: 61 LEHTNLLALHAKRITIMRKDMQLARRIRGQ 90 >6BUZ-A nrPDB Length = 160 Score = 125 bits (313), Expect = 8e-30, Method: Composition-based stats. Identities = 62/130 (47%), Positives = 78/130 (60%), Gaps = 6/130 (4%) Query: 9 RKSTGGKAPRKQLATKAAR----KSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRK 64 R+S +APR++ + + PS R L+EIR+ QKST LLIRK Sbjct: 25 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRK 84 Query: 65 LPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPK 122 LPF RL REI F D +Q+ A+ ALQEA+EA+LV L ED L +HA RVT+ PK Sbjct: 85 LPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPK 144 Query: 123 DIQLARRIRG 132 D+QLARRIRG Sbjct: 145 DVQLARRIRG 154 >3R45-A nrPDB Length = 156 Score = 124 bits (312), Expect = 1e-29, Method: Composition-based stats. Identities = 62/130 (47%), Positives = 78/130 (60%), Gaps = 6/130 (4%) Query: 9 RKSTGGKAPRKQLATKAAR----KSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRK 64 R+S +APR++ + + PS R L+EIR+ QKST LLIRK Sbjct: 21 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRK 80 Query: 65 LPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPK 122 LPF RL REI F D +Q+ A+ ALQEA+EA+LV L ED L +HA RVT+ PK Sbjct: 81 LPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPK 140 Query: 123 DIQLARRIRG 132 D+QLARRIRG Sbjct: 141 DVQLARRIRG 150 >2L5A-A nrPDB Length = 235 Score = 123 bits (309), Expect = 2e-29, Method: Composition-based stats. Identities = 54/78 (69%), Positives = 65/78 (83%), Gaps = 3/78 (3%) Query: 59 ELLIRKLPFQRLVREIAQDFNT---DLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAK 115 +LLI K+PF RLV+E+ +F T DLR+QS A+ ALQEASEAYLVGLLE TNL A+HAK Sbjct: 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAK 68 Query: 116 RVTIMPKDIQLARRIRGE 133 R+TIM KD+QLARRIRG+ Sbjct: 69 RITIMKKDMQLARRIRGQ 86 >3AN2-A nrPDB Length = 143 Score = 123 bits (309), Expect = 2e-29, Method: Composition-based stats. Identities = 62/130 (47%), Positives = 78/130 (60%), Gaps = 6/130 (4%) Query: 9 RKSTGGKAPRKQLATKAAR----KSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRK 64 R+S +APR++ + + PS R L+EIR+ QKST LLIRK Sbjct: 8 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRK 67 Query: 65 LPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPK 122 LPF RL REI F D +Q+ A+ ALQEA+EA+LV L ED L +HA RVT+ PK Sbjct: 68 LPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPK 127 Query: 123 DIQLARRIRG 132 D+QLARRIRG Sbjct: 128 DVQLARRIRG 137 >3NQJ-A nrPDB Length = 82 Score = 115 bits (288), Expect = 6e-27, Method: Composition-based stats. Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 2/75 (2%) Query: 60 LLIRKLPFQRLVREIAQDF--NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRV 117 LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV L ED L +HA RV Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61 Query: 118 TIMPKDIQLARRIRG 132 T+ PKD+QLARRIRG Sbjct: 62 TLFPKDVQLARRIRG 76 >2LY8-A nrPDB Length = 121 Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats. Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%) Query: 61 LIRKLPFQRLVREIAQDFNT---DLRFQSAAVGALQEASEAYLVGLLEDTNLCAIH 113 LI K+PF RLV+E+ +F T DLR+QS A+ ALQEASEAYLVGLLE TNL A+H Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56 >2K3Y-A nrPDB Length = 136 Score = 34.2 bits (77), Expect = 0.017, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 2/29 (6%) Query: 16 APRKQLATKAARK-STPSTCGV-KPHRYR 42 A +K+LA +A S P+T GV KPHRYR Sbjct: 108 AMKKRLANEAGSTGSAPATGGVKKPHRYR 136 >4EYU-A nrPDB Length = 486 Score = 32.7 bits (73), Expect = 0.043, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Query: 20 QLATKAARKSTPSTCGVKP---HRYRPGT-VALREIRRYQKSTELLIRKLPFQRL 70 Q TKAARKS P+T G H + GT + L + +R++ + L++ F R+ Sbjct: 145 QGPTKAARKSAPATGGGSSGSHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRV 199 >4A5P-A nrPDB Length = 383 Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLE 105 ALRE+R +K+ LL+ + +R V+ + D RF+S V + E EAY + +L+ Sbjct: 329 ALRELRNAKKNFVLLVS-VDIRRFVKRL-----IDNRFKSILVISYAEIDEAYTINVLK 381 >2FRX-A nrPDB Length = 479 Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 36/128 (28%) Query: 1 MARTKQT-------ARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRR 53 +AR ++T A K G P + + A + + GV G +R Sbjct: 305 VARLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQIRQAATGV-------GLNWDENLRL 357 Query: 54 YQKSTEL---------LIRKLPFQRLVREIAQDFNTDLRFQSAAVGAL------------ 92 +Q+ EL LI K+ F RL ++A+ N R+Q AV AL Sbjct: 358 WQRDKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALASPDNMNAFELT 417 Query: 93 -QEASEAY 99 QEA E Y Sbjct: 418 PQEAEEWY 425 >1WSR-A nrPDB Length = 375 Score = 29.2 bits (64), Expect = 0.51, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 35 GVKPHRY-RPGTVALREIRRYQKSTELLIRKLPF 67 G P Y RPGT+ L E+RR Q+ ++ K+PF Sbjct: 335 GYVPCEYSRPGTMLLVEVRRKQQMA--VVSKMPF 366 >3U5R-E nrPDB Length = 218 Score = 29.2 bits (64), Expect = 0.59, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 15/76 (19%) Query: 21 LATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLI----RKLPFQRLVREIAQ 76 L T+AA P G L + ++ S LL+ + PF L+RE Sbjct: 34 LGTRAADFVLPDAGG-----------NLFTLAEFKDSPALLVAFISNRCPFVVLIREALA 82 Query: 77 DFNTDLRFQSAAVGAL 92 F D Q AV A+ Sbjct: 83 KFAGDYAGQGLAVVAI 98 >5CJH-A nrPDB Length = 764 Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 16 APRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELL 61 AP + A KS + G + H + P + L +R++Q S L Sbjct: 24 APETTTFGRCAVKSNQAGGGTRSHDWWPCQLRLDVLRQFQPSQNPL 69 >5L9T-R nrPDB Length = 493 Score = 28.9 bits (63), Expect = 0.67, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 25 AARKSTPSTCG-VKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL-VREIAQDFNTDL 82 + ++S+P V P+ P + +++ R + I K+PF+ L E+ DF +L Sbjct: 133 STKRSSPDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNL 192 Query: 83 -RFQSAAVGALQEASEAYL 100 + S V ++ + YL Sbjct: 193 VDWSSLNVLSVGLGTCVYL 211 >3WC1-A nrPDB Length = 271 Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 10 KSTGGKAPRKQLATKAARKSTP--STCGV----KPHRYRPGTVALREIRRYQKSTELLIR 63 K T +A ++ + T A+ K+ CGV + Y+ GT+ +RE Y+ E + Sbjct: 174 KMTPQQAEQRLMGTVASDKNEILFKECGVNYNNESEMYKKGTIIVREFENYETEDEAELS 233 Query: 64 KLPFQRLVRE 73 K QRL ++ Sbjct: 234 KRQVQRLEKK 243 >4E44-A nrPDB Length = 112 Score = 28.5 bits (62), Expect = 0.99, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 70 LVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQ-LAR 128 L E+A D +++F + A+ E + +D + A HAKR TI +D++ LAR Sbjct: 32 LCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 89 Query: 129 R 129 R Sbjct: 90 R 90 >2IDC-A nrPDB Length = 179 Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats. Identities = 10/14 (71%), Positives = 13/14 (92%) Query: 121 PKDIQLARRIRGER 134 K+I+LARR+RGER Sbjct: 166 KKEIKLARRLRGER 179 >2NZ2-A nrPDB Length = 413 Score = 27.7 bits (60), Expect = 1.4, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 70 LVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARR 129 + +++++F + + A+Q ++ L ED L R I K +++A+R Sbjct: 61 FIEDVSREFVEEFIWP-----AIQSSA------LYEDRYLLGTSLARPCIARKQVEIAQR 109 >4NE3-A nrPDB Length = 93 Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 74 IAQDFNTD--LRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQ-LARR 129 + ++ D ++F + A+ E + +D + A HAKR TI +D++ LARR Sbjct: 17 LCEEVALDKAMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 75 >1KU5-A nrPDB Length = 70 Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 66 PFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQ 125 P RL+R+ + R A L E E Y + + + A HA R T+ +DI+ Sbjct: 11 PVDRLIRKAGAE-----RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIK 65 Query: 126 LA 127 LA Sbjct: 66 LA 67 >4C5U-A nrPDB Length = 707 Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 9/43 (20%) Query: 31 PSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 73 P VKPH PG + E+ E L+R PFQ L RE Sbjct: 294 PLIHKVKPH---PGQIESAEL------LEWLLRSSPFQELSRE 327 >5XXU-I nrPDB Length = 205 Score = 25.4 bits (54), Expect = 6.9, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRP 43 ++R ++ + TGG+ P Q K P+ + P R RP Sbjct: 3 ISRDRRHKHRRTGGRMPVHQKKRKFELGRPPAMTKLGPKRVRP 45 >4NE1-C nrPDB Length = 105 Score = 25.4 bits (54), Expect = 7.1, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 74 IAQDFNTD--LRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARR 129 + ++ D ++F + A+ E + +D + A HAKR TI +D++L R Sbjct: 17 LCEEVALDKAMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 74 >1J93-A nrPDB Length = 353 Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 42 RPGTVALREIRRYQKSTELLIRKLPFQR 69 RP +R+ RY KS +LL K P R Sbjct: 26 RPPVWLMRQAGRYMKSYQLLCEKYPLFR 53 >1B67-A nrPDB Length = 68 Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 66 PFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQ 125 P R+++ + R A AL + E + + A HA R TI +DI+ Sbjct: 7 PIGRIIKNAGAE-----RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIE 61 Query: 126 LARRI 130 LAR++ Sbjct: 62 LARKM 66 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.136 0.378 Lambda K H 0.267 0.0405 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,750,586 Number of Sequences: 36641 Number of extensions: 159524 Number of successful extensions: 579 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 471 Number of HSP's gapped (non-prelim): 102 length of query: 135 length of database: 10,336,785 effective HSP length: 87 effective length of query: 48 effective length of database: 7,149,018 effective search space: 343152864 effective search space used: 343152864 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 53 (25.0 bits)