BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q6LZY8
         (271 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4CAD-C nrPDB                                                          531   e-151

>4CAD-C nrPDB
          Length = 271

 Score =  531 bits (1367), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/271 (99%), Positives = 271/271 (100%)

Query: 1   MISSYKYNPKLYFLSTFVVTYILWFTGAYLSFSSTYSGIYMLIMLPGLMAPFIISTILIA 60
           MISSYKYNPKLYFLSTFVVTYILWFTGAYLSFSSTYSGIYMLIMLPGLMAPFIISTILIA
Sbjct: 1   MISSYKYNPKLYFLSTFVVTYILWFTGAYLSFSSTYSGIYMLIMLPGLMAPFIISTILIA 60

Query: 61  KSKNNELKKDFINRLFNLKLINLKTIPVVFLLMPAVILLSILLSIPFGGSISQFQFSGGF 120
           KSKNN+LKKDFINRLFNLKLINLKTIPVVFLLMPAVILLSILLSIPFGGSISQFQFSGGF
Sbjct: 61  KSKNNDLKKDFINRLFNLKLINLKTIPVVFLLMPAVILLSILLSIPFGGSISQFQFSGGF 120

Query: 121 SFSTDFVPVLFLLLLAATFEELGWRGYAFDSLQSRYSLFKASILFGIFWSLWHFPLIFVN 180
           SFSTDFVPVLFLLLLAATFEELGWRGYAFDSLQSRYSLFKASILFGIFWSLWHFPLIFVN
Sbjct: 121 SFSTDFVPVLFLLLLAATFEELGWRGYAFDSLQSRYSLFKASILFGIFWSLWHFPLIFVN 180

Query: 181 NSYQYEIFNQSIWYGLNFFLSILPMGIIITWMCLKNRKSIILAIIFHFLINLNQELLAIT 240
           NSYQYEIFNQSIWYGLNFFLSILPMGIIITWMCLKNRKSIILAIIFHFLINLNQELLAIT
Sbjct: 181 NSYQYEIFNQSIWYGLNFFLSILPMGIIITWMCLKNRKSIILAIIFHFLINLNQELLAIT 240

Query: 241 QDTKIIETGVLFLVAAAIILYDKKMFFEKLG 271
           QDTKIIETGVLFLVAAAIILYDKKMFFEKLG
Sbjct: 241 QDTKIIETGVLFLVAAAIILYDKKMFFEKLG 271


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4CAD-C nrPDB                                                          408   e-114

Sequences not found previously or not previously below threshold:

2FTW-A nrPDB                                                           28   5.4  


CONVERGED!
>4CAD-C nrPDB
          Length = 271

 Score =  408 bits (1049), Expect = e-114,   Method: Composition-based stats.
 Identities = 270/271 (99%), Positives = 271/271 (100%)

Query: 1   MISSYKYNPKLYFLSTFVVTYILWFTGAYLSFSSTYSGIYMLIMLPGLMAPFIISTILIA 60
           MISSYKYNPKLYFLSTFVVTYILWFTGAYLSFSSTYSGIYMLIMLPGLMAPFIISTILIA
Sbjct: 1   MISSYKYNPKLYFLSTFVVTYILWFTGAYLSFSSTYSGIYMLIMLPGLMAPFIISTILIA 60

Query: 61  KSKNNELKKDFINRLFNLKLINLKTIPVVFLLMPAVILLSILLSIPFGGSISQFQFSGGF 120
           KSKNN+LKKDFINRLFNLKLINLKTIPVVFLLMPAVILLSILLSIPFGGSISQFQFSGGF
Sbjct: 61  KSKNNDLKKDFINRLFNLKLINLKTIPVVFLLMPAVILLSILLSIPFGGSISQFQFSGGF 120

Query: 121 SFSTDFVPVLFLLLLAATFEELGWRGYAFDSLQSRYSLFKASILFGIFWSLWHFPLIFVN 180
           SFSTDFVPVLFLLLLAATFEELGWRGYAFDSLQSRYSLFKASILFGIFWSLWHFPLIFVN
Sbjct: 121 SFSTDFVPVLFLLLLAATFEELGWRGYAFDSLQSRYSLFKASILFGIFWSLWHFPLIFVN 180

Query: 181 NSYQYEIFNQSIWYGLNFFLSILPMGIIITWMCLKNRKSIILAIIFHFLINLNQELLAIT 240
           NSYQYEIFNQSIWYGLNFFLSILPMGIIITWMCLKNRKSIILAIIFHFLINLNQELLAIT
Sbjct: 181 NSYQYEIFNQSIWYGLNFFLSILPMGIIITWMCLKNRKSIILAIIFHFLINLNQELLAIT 240

Query: 241 QDTKIIETGVLFLVAAAIILYDKKMFFEKLG 271
           QDTKIIETGVLFLVAAAIILYDKKMFFEKLG
Sbjct: 241 QDTKIIETGVLFLVAAAIILYDKKMFFEKLG 271


>2FTW-A nrPDB
          Length = 521

 Score = 27.9 bits (61), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 12/80 (15%)

Query: 91  LLMPAVILLSILLSIPFGGSIS--------QFQFSGGFSFSTDFV-PVLFLLLLAATFEE 141
           LL+P  I       +PF G++S        Q   +GG +F  DFV P     LL A  + 
Sbjct: 57  LLLPGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQ- 115

Query: 142 LGWRGYAFDSLQSRYSLFKA 161
             W+ +A + +   YSL  A
Sbjct: 116 --WKKWADEKVNCDYSLHVA 133


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.327    0.153    0.496 

Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,168,653
Number of Sequences: 36641
Number of extensions: 647093
Number of successful extensions: 1598
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 37
length of query: 271
length of database: 10,336,785
effective HSP length: 95
effective length of query: 176
effective length of database: 6,855,890
effective search space: 1206636640
effective search space used: 1206636640
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.1 bits)