BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q64536
(407 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
3CRK-A nrPDB 851 0.0
2Q8F-A nrPDB 598 e-171
1Y8N-A nrPDB 577 e-165
2E0A-A nrPDB 567 e-162
4DZY-A nrPDB 166 1e-41
3SL2-A nrPDB 44 2e-04
4I5S-A nrPDB 37 0.015
4U7O-A nrPDB 35 0.070
6AZR-A nrPDB 35 0.073
4GCZ-A nrPDB 35 0.083
4PL9-A nrPDB 32 0.37
1RY6-A nrPDB 32 0.51
4RIT-B nrPDB 31 0.93
5LFK-A nrPDB 30 2.0
4XEM-A nrPDB 29 4.6
4DH2-B nrPDB 29 4.6
4PU9-A nrPDB 28 6.1
3D36-A nrPDB 28 7.3
5MMP-A nrPDB 28 8.4
>3CRK-A nrPDB
Length = 407
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/407 (100%), Positives = 407/407 (100%)
Query: 1 MRWFRALLKNASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVR 60
MRWFRALLKNASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVR
Sbjct: 1 MRWFRALLKNASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVR 60
Query: 61 LANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIR 120
LANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIR
Sbjct: 61 LANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIR 120
Query: 121 NRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGST 180
NRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGST
Sbjct: 121 NRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGST 180
Query: 181 NPAHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVY 240
NPAHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVY
Sbjct: 181 NPAHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVY 240
Query: 241 VPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI 300
VPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI
Sbjct: 241 VPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI 300
Query: 301 ERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
ERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL
Sbjct: 301 ERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
Query: 361 KALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRVS 407
KALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRVS
Sbjct: 361 KALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRVS 407
>2Q8F-A nrPDB
Length = 407
Score = 598 bits (1542), Expect = e-171, Method: Compositional matrix adjust.
Identities = 274/398 (68%), Positives = 339/398 (85%), Gaps = 3/398 (0%)
Query: 11 ASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINL 70
AS G P ++ +++FSPSPLSMKQFLDFGS NACEKTSF FLRQELPVRLANIMKEI+L
Sbjct: 8 ASERGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISL 67
Query: 71 LPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTM 130
LPD +L TPSVQLVQSWY+QSL ++++F DK ED + + FTD ++ IRNRHNDV+PTM
Sbjct: 68 LPDNLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTM 127
Query: 131 AQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIF--DGSTNPAHPKHI 188
AQGV+EYK+++G DPV++QN+QYFLDRFY+SRISIRML+NQH+L+F G +P+H KHI
Sbjct: 128 AQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHI 187
Query: 189 GSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHM 248
GSI+PNC+V +V+KD Y+ A+ LCD YY+ SP+LE++E+NA + QPI +VYVPSHLYHM
Sbjct: 188 GSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHM 247
Query: 249 LFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMY 308
+FELFKNAMRAT+E H + PPI++ V LG EDL++KMSDRGGGVPLRKI+RLF+YMY
Sbjct: 248 VFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMY 307
Query: 309 STAPTPQPGTG-GTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDS 367
STAP P+ T PLAGFGYGLPISRLYA+YFQGDL+L+S+EG+GTDAVIY+KALSTDS
Sbjct: 308 STAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDS 367
Query: 368 VERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYR 405
+ERLPVYNK+AW+HY T EA DWCVPS EPK+ +T+R
Sbjct: 368 IERLPVYNKAAWKHYNTNHEADDWCVPSREPKDMTTFR 405
>1Y8N-A nrPDB
Length = 419
Score = 577 bits (1487), Expect = e-165, Method: Compositional matrix adjust.
Identities = 272/407 (66%), Positives = 331/407 (81%), Gaps = 7/407 (1%)
Query: 6 ALLKNASLAG---APKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLA 62
A L+N G PK IE +S+FSPSPLS+KQFLDFG NACEKTS+ FLR+ELPVRLA
Sbjct: 12 ARLENLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLA 71
Query: 63 NIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNR 122
N M+E+NLLPD +L+ PSV LVQSWY+QS L+++E+ +K PED + L F L+ +RNR
Sbjct: 72 NTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNR 131
Query: 123 HNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNP 182
HNDVVPTMAQGV+EYK+ +G DP + NIQYFLDRFY +RIS RMLINQHTL+F G TNP
Sbjct: 132 HNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNP 191
Query: 183 AHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVP 242
HPKHIGSIDP C+V+DVVKDAY+ AK+LC++YY+ +P+LE++E NA +PI +VYVP
Sbjct: 192 VHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVP 251
Query: 243 SHLYHMLFELFKNAMRATVESHESSLT-LPPIKIMVALGEEDLSIKMSDRGGGVPLRKIE 301
SHL+HMLFELFKN+MRATVE +E P +K +V LG+EDLSIK+SD GGGVPLRKI+
Sbjct: 252 SHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKID 311
Query: 302 RLFSYMYSTAPTP--QPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIY 359
RLF+YMYSTAP P +P T PLAGFGYGLPISRLYA+YFQGDL+L+SMEG GTDAVIY
Sbjct: 312 RLFNYMYSTAPRPSLEP-TRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIY 370
Query: 360 LKALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRV 406
LKALS++S ERLPV+NKSAWRHY+T EA DW PS+EP++ S Y+
Sbjct: 371 LKALSSESFERLPVFNKSAWRHYKTTPEADDWSNPSSEPRDASKYKA 417
>2E0A-A nrPDB
Length = 394
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 257/386 (66%), Positives = 326/386 (84%), Gaps = 2/386 (0%)
Query: 16 APKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPDRV 75
P+ +EHFS++SPSPLSMKQ LDFGS NACE+TSF FLRQELPVRLANI+KEI++LP ++
Sbjct: 3 VPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQL 62
Query: 76 LSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVL 135
++T SVQLV+SWY+QSL+D++EF +K P+D + LS F D L+ +RNRH++VVPTMAQG++
Sbjct: 63 VNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 122
Query: 136 EYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHIGSIDPNC 195
EYKD DPV+NQN+QYFLDRFY++RIS RML+NQH LIF S +P HIGSIDPNC
Sbjct: 123 EYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQT-GNPSHIGSIDPNC 181
Query: 196 SVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKN 255
V VV+DA++ +++LCD+YY++SP+L++ +VN QPIH+VYVPSHL+HMLFELFKN
Sbjct: 182 DVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKN 241
Query: 256 AMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP- 314
AMRATVE E+ +L PI+++V LG+EDL+IK+SDRGGGVPLR I+RLFSY YSTAPTP
Sbjct: 242 AMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPV 301
Query: 315 QPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVY 374
+ PLAGFGYGLPISRLYAKYFQGDL L+S+ G+GTDA+IYLKALS++S+E+LPV+
Sbjct: 302 MDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPVF 361
Query: 375 NKSAWRHYQTIQEAGDWCVPSTEPKN 400
NKSA++HYQ EA DWC+PS EPKN
Sbjct: 362 NKSAFKHYQMSSEADDWCIPSREPKN 387
>4DZY-A nrPDB
Length = 418
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 173/338 (51%), Gaps = 37/338 (10%)
Query: 49 SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHR 107
S +L+QELPVR+A+ +K LP + P++ V Y+++ + +F KD D
Sbjct: 90 SGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEA 149
Query: 108 TLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM 167
Q L+ + H DVV +A+G+ E + D+ + ++YFLD+ SR+ IRM
Sbjct: 150 QYCQLVRQLL---DDHKDVVTLLAEGLRESRKHIEDEKL----VRYFLDKTLTSRLGIRM 202
Query: 168 LINQHTLIFDGSTNPAHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEV 227
L H + + P +G I S +++ D A+ LC+ Y +P + I
Sbjct: 203 LATHHLALHEDK-----PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRI--- 254
Query: 228 NATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESH-ESSLTLPPIKIMVALGEEDLSI 286
N ++P L ++L EL KNAMRAT+ESH ++ +P + I +A + DL I
Sbjct: 255 ---NGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLII 311
Query: 287 KMSDRGGGVPLRKIERLFSYMYSTA------PTPQP---------GTGGTPLAGFGYGLP 331
++SDRGGG+ + ++R+ Y ++TA P P G P+ GFG+GLP
Sbjct: 312 RISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLP 371
Query: 332 ISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVE 369
SR YA+Y G LQL S++G GTD +YL+ D E
Sbjct: 372 TSRAYAEYLGGSLQLQSLQGIGTD--VYLRLRHIDGRE 407
>3SL2-A nrPDB
Length = 177
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLF 304
+ +L + NA++ + E + ++ V EE L I + D G G+P + +E++F
Sbjct: 44 ITQVLDNIISNALKYSPEGGHVTFSID-----VNEEEELLYISVKDEGIGIPKKDVEKVF 98
Query: 305 SYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGT 354
Y GGT G GL I++ + GD+ S+EG GT
Sbjct: 99 DRFYRVDKARTRKLGGT-----GLGLAIAKEMVQAHGGDIWADSIEGKGT 143
>4I5S-A nrPDB
Length = 450
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 272 PIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLP 331
+ I + + L + +SD+G G+P + + +F Y GGT G GL
Sbjct: 348 KVTITMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGT-----GLGLA 402
Query: 332 ISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
I++ K +G + S EG G+ I L
Sbjct: 403 IAKEIVKQHKGFIWANSEEGEGSTFTIVL 431
>4U7O-A nrPDB
Length = 277
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 286 IKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQ 345
I +SD+G G+P + +F + GGT G GL IS+ + G +
Sbjct: 191 ISISDQGLGIPRADLGHVFDRFFRVDKARSRAQGGT-----GLGLAISKEVVQMLGGRIW 245
Query: 346 LFSMEGFGTDAVIYL 360
+ S+EG G+ I L
Sbjct: 246 VDSVEGKGSTFYISL 260
>6AZR-A nrPDB
Length = 259
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 19/136 (13%)
Query: 230 TNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEED--LSIK 287
+N P+ P+ + +L L N ++ S P + V L E+D + I
Sbjct: 125 SNVPCPVEAYIDPTRIRQVLLNLLNNGVKY------SKKDAPDKYVKVILDEKDGGVLII 178
Query: 288 MSDRGGGVPLRKIERLFSYMY---STAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDL 344
+ D G G+P +R+F Y S+ PGT G GL I++ + G +
Sbjct: 179 VEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGT--------GLGLAITKEIVELHGGRI 230
Query: 345 QLFSMEGFGTDAVIYL 360
+ S G G+ +++
Sbjct: 231 WVESEVGKGSRFFVWI 246
>4GCZ-A nrPDB
Length = 385
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 244 HLYHMLFELFKNAMRATVESHESSLTL---PPIKIMVALGEEDLSIKMSDRGGGVPLRKI 300
+ +L LF+NA+ A +S L + P M+ +++SD G G I
Sbjct: 268 QIQQVLVNLFRNALEAMAQSQRRELVVTNTPAADDMI-------EVEVSDTGSGFQDDVI 320
Query: 301 ERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISR 334
LF ++T T G G GL ISR
Sbjct: 321 PNLFQTFFTTKDT-----------GMGVGLSISR 343
>4PL9-A nrPDB
Length = 183
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 284 LSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGD 343
L +K+ D G G+ + I ++F+ T +GG+ G GL IS+ + +G+
Sbjct: 101 LRVKVKDSGAGINPQDIPKIFTKFAQTQSLATRSSGGS-----GLGLAISKRFVNLMEGN 155
Query: 344 LQLFSMEGFG 353
+ + S +G G
Sbjct: 156 IWIES-DGLG 164
>1RY6-A nrPDB
Length = 360
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 249 LFELF-KNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI 300
L++L K M A +E+ + + + +KI+ L +E+L +KM D GV LRKI
Sbjct: 151 LYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMID---GVLLRKI 200
>4RIT-B nrPDB
Length = 486
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 175 IFDGSTNPAHPKHIGSIDPNCSVSDVVKD 203
+ DGS NPA+P +IG +DP + ++ D
Sbjct: 78 MVDGSMNPANPGYIGHMDPMPATMAILGD 106
>5LFK-A nrPDB
Length = 298
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 194 NCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELF 253
N VS+ +K +++L + + A + VN P++ P+ L L +
Sbjct: 142 NALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLY--GNPNALESALENIV 199
Query: 254 KNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPT 313
+NA+R SH I++ A+ ++ ++I + D G GV E++F Y T
Sbjct: 200 RNALRY---SHTK------IEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEA 250
Query: 314 PQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
+GGT G GL I + +G ++ G VI+L
Sbjct: 251 RDRESGGT-----GLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWL 292
>4XEM-A nrPDB
Length = 475
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 18/76 (23%)
Query: 328 YGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKA----LSTDSVERLPVYNKSAWRHYQ 383
+G+PI RLY YF GD E G +A + K L D + LP K
Sbjct: 146 FGIPIERLYVTYFGGD------EAAGLEADLECKQIWQNLGLDDTKILPGNMKD------ 193
Query: 384 TIQEAGDW--CVPSTE 397
E GD C P +E
Sbjct: 194 NFWEMGDTGPCGPCSE 209
>4DH2-B nrPDB
Length = 82
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 188 IGSIDPN--CSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHL 245
IG ++ + ++SD V + +++ D + A D+ + +VN N I Y+ +L
Sbjct: 7 IGDVNADGVVNISDYVLMKRYILRIIAD--FPADDDMWVGDVNGDNVINDIDCNYLKRYL 64
Query: 246 YHMLFELFKNA 256
HM+ E KN+
Sbjct: 65 LHMIREFPKNS 75
>4PU9-A nrPDB
Length = 398
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP 296
L+HM+FE+ NA+ + H K ++ D S+ + D G G+P
Sbjct: 42 LHHMVFEVVDNAIDEALAGH--------CKEIIVTIHADNSVSVQDDGRGIP 85
>3D36-A nrPDB
Length = 244
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 255 NAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP 314
N M+ +E+ + TL ++ V++ + I+++D G G+ ++ERL ++T
Sbjct: 130 NVMKNAIEAMPNGGTL---QVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTT---- 182
Query: 315 QPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
G GT G G+ + + G +++ S GT IYL
Sbjct: 183 -KGVKGT-----GLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYL 222
>5MMP-A nrPDB
Length = 234
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP 296
L+HM+FE+ NA+ + H K ++ D S+ + D G G+P
Sbjct: 50 LHHMVFEVVDNAIDEALAGH--------CKEIIVTIHADNSVSVQDDGRGIP 93
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
3CRK-A nrPDB 711 0.0
2Q8F-A nrPDB 674 0.0
1Y8N-A nrPDB 657 0.0
2E0A-A nrPDB 639 0.0
4DZY-A nrPDB 411 e-115
3SL2-A nrPDB 135 3e-32
Sequences not found previously or not previously below threshold:
4I5S-A nrPDB 93 2e-19
4U7O-A nrPDB 89 4e-18
6AZR-A nrPDB 73 2e-13
5LFK-A nrPDB 58 9e-09
4PL9-A nrPDB 55 6e-08
4GCZ-A nrPDB 52 4e-07
4Q20-A nrPDB 52 5e-07
6BLK-C nrPDB 48 9e-06
1ID0-A nrPDB 47 1e-05
3D36-A nrPDB 47 1e-05
1R62-A nrPDB 47 2e-05
1MX0-A nrPDB 46 3e-05
2ZBK-B nrPDB 46 3e-05
6DK7-A nrPDB 44 1e-04
3CGZ-A nrPDB 43 3e-04
1YSR-A nrPDB 39 0.004
3JZ3-A nrPDB 37 0.014
5IDM-A nrPDB 37 0.016
5IDJ-A nrPDB 37 0.016
4XIV-A nrPDB 35 0.046
1I5D-A nrPDB 35 0.046
1XRE-A nrPDB 35 0.084
3JA6-C nrPDB 34 0.086
4JPB-A nrPDB 33 0.20
5CPH-A nrPDB 32 0.39
4URM-A nrPDB 32 0.39
5MMP-A nrPDB 31 0.85
4PU9-A nrPDB 31 0.85
4XEM-A nrPDB 31 1.1
1TID-A nrPDB 30 1.2
5AA5-C nrPDB 30 1.6
4KP4-A nrPDB 30 1.7
4CTI-A nrPDB 30 1.7
1BXD-A nrPDB 30 1.7
4OKD-A nrPDB 30 2.4
3ZKD-A nrPDB 30 2.5
4KPA-A nrPDB 29 4.7
>3CRK-A nrPDB
Length = 407
Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats.
Identities = 407/407 (100%), Positives = 407/407 (100%)
Query: 1 MRWFRALLKNASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVR 60
MRWFRALLKNASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVR
Sbjct: 1 MRWFRALLKNASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVR 60
Query: 61 LANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIR 120
LANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIR
Sbjct: 61 LANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIR 120
Query: 121 NRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGST 180
NRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGST
Sbjct: 121 NRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGST 180
Query: 181 NPAHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVY 240
NPAHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVY
Sbjct: 181 NPAHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVY 240
Query: 241 VPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI 300
VPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI
Sbjct: 241 VPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI 300
Query: 301 ERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
ERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL
Sbjct: 301 ERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
Query: 361 KALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRVS 407
KALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRVS
Sbjct: 361 KALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRVS 407
>2Q8F-A nrPDB
Length = 407
Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats.
Identities = 274/400 (68%), Positives = 340/400 (85%), Gaps = 3/400 (0%)
Query: 11 ASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINL 70
AS G P ++ +++FSPSPLSMKQFLDFGS NACEKTSF FLRQELPVRLANIMKEI+L
Sbjct: 8 ASERGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISL 67
Query: 71 LPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTM 130
LPD +L TPSVQLVQSWY+QSL ++++F DK ED + + FTD ++ IRNRHNDV+PTM
Sbjct: 68 LPDNLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTM 127
Query: 131 AQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFD--GSTNPAHPKHI 188
AQGV+EYK+++G DPV++QN+QYFLDRFY+SRISIRML+NQH+L+F G +P+H KHI
Sbjct: 128 AQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHI 187
Query: 189 GSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHM 248
GSI+PNC+V +V+KD Y+ A+ LCD YY+ SP+LE++E+NA + QPI +VYVPSHLYHM
Sbjct: 188 GSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHM 247
Query: 249 LFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMY 308
+FELFKNAMRAT+E H + PPI++ V LG EDL++KMSDRGGGVPLRKI+RLF+YMY
Sbjct: 248 VFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMY 307
Query: 309 STAPTPQPGT-GGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDS 367
STAP P+ T PLAGFGYGLPISRLYA+YFQGDL+L+S+EG+GTDAVIY+KALSTDS
Sbjct: 308 STAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDS 367
Query: 368 VERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRVS 407
+ERLPVYNK+AW+HY T EA DWCVPS EPK+ +T+R +
Sbjct: 368 IERLPVYNKAAWKHYNTNHEADDWCVPSREPKDMTTFRSA 407
>1Y8N-A nrPDB
Length = 419
Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats.
Identities = 271/406 (66%), Positives = 329/406 (81%), Gaps = 5/406 (1%)
Query: 6 ALLKNASLAG---APKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLA 62
A L+N G PK IE +S+FSPSPLS+KQFLDFG NACEKTS+ FLR+ELPVRLA
Sbjct: 12 ARLENLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLA 71
Query: 63 NIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNR 122
N M+E+NLLPD +L+ PSV LVQSWY+QS L+++E+ +K PED + L F L+ +RNR
Sbjct: 72 NTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNR 131
Query: 123 HNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNP 182
HNDVVPTMAQGV+EYK+ +G DP + NIQYFLDRFY +RIS RMLINQHTL+F G TNP
Sbjct: 132 HNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNP 191
Query: 183 AHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVP 242
HPKHIGSIDP C+V+DVVKDAY+ AK+LC++YY+ +P+LE++E NA +PI +VYVP
Sbjct: 192 VHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVP 251
Query: 243 SHLYHMLFELFKNAMRATVESHESSLT-LPPIKIMVALGEEDLSIKMSDRGGGVPLRKIE 301
SHL+HMLFELFKN+MRATVE +E P +K +V LG+EDLSIK+SD GGGVPLRKI+
Sbjct: 252 SHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKID 311
Query: 302 RLFSYMYSTAPTPQPG-TGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
RLF+YMYSTAP P T PLAGFGYGLPISRLYA+YFQGDL+L+SMEG GTDAVIYL
Sbjct: 312 RLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYL 371
Query: 361 KALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRV 406
KALS++S ERLPV+NKSAWRHY+T EA DW PS+EP++ S Y+
Sbjct: 372 KALSSESFERLPVFNKSAWRHYKTTPEADDWSNPSSEPRDASKYKA 417
>2E0A-A nrPDB
Length = 394
Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats.
Identities = 257/389 (66%), Positives = 327/389 (84%), Gaps = 2/389 (0%)
Query: 16 APKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPDRV 75
P+ +EHFS++SPSPLSMKQ LDFGS NACE+TSF FLRQELPVRLANI+KEI++LP ++
Sbjct: 3 VPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQL 62
Query: 76 LSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVL 135
++T SVQLV+SWY+QSL+D++EF +K P+D + LS F D L+ +RNRH++VVPTMAQG++
Sbjct: 63 VNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 122
Query: 136 EYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHIGSIDPNC 195
EYKD DPV+NQN+QYFLDRFY++RIS RML+NQH LIF S +P HIGSIDPNC
Sbjct: 123 EYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQT-GNPSHIGSIDPNC 181
Query: 196 SVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKN 255
V VV+DA++ +++LCD+YY++SP+L++ +VN QPIH+VYVPSHL+HMLFELFKN
Sbjct: 182 DVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKN 241
Query: 256 AMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP- 314
AMRATVE E+ +L PI+++V LG+EDL+IK+SDRGGGVPLR I+RLFSY YSTAPTP
Sbjct: 242 AMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPV 301
Query: 315 QPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVY 374
+ PLAGFGYGLPISRLYAKYFQGDL L+S+ G+GTDA+IYLKALS++S+E+LPV+
Sbjct: 302 MDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPVF 361
Query: 375 NKSAWRHYQTIQEAGDWCVPSTEPKNTST 403
NKSA++HYQ EA DWC+PS EPKN +
Sbjct: 362 NKSAFKHYQMSSEADDWCIPSREPKNLAK 390
>4DZY-A nrPDB
Length = 418
Score = 411 bits (1056), Expect = e-115, Method: Composition-based stats.
Identities = 111/339 (32%), Positives = 173/339 (51%), Gaps = 37/339 (10%)
Query: 49 SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHR 107
S +L+QELPVR+A+ +K LP + P++ V Y+++ + +F KD D
Sbjct: 90 SGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEA 149
Query: 108 TLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM 167
Q L+ + H DVV +A+G+ E + D+ + ++YFLD+ SR+ IRM
Sbjct: 150 QYCQLVRQLL---DDHKDVVTLLAEGLRESRKHIEDEKL----VRYFLDKTLTSRLGIRM 202
Query: 168 LINQHTLIFDGSTNPAHPKHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEV 227
L H + + P +G I S +++ D A+ LC+ Y +P + I
Sbjct: 203 LATHHLALHEDK-----PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRI--- 254
Query: 228 NATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESH-ESSLTLPPIKIMVALGEEDLSI 286
N ++P L ++L EL KNAMRAT+ESH ++ +P + I +A + DL I
Sbjct: 255 ---NGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLII 311
Query: 287 KMSDRGGGVPLRKIERLFSYMYSTA------PTPQP---------GTGGTPLAGFGYGLP 331
++SDRGGG+ + ++R+ Y ++TA P P G P+ GFG+GLP
Sbjct: 312 RISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLP 371
Query: 332 ISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVER 370
SR YA+Y G LQL S++G GTD +YL+ D E
Sbjct: 372 TSRAYAEYLGGSLQLQSLQGIGTD--VYLRLRHIDGREE 408
>3SL2-A nrPDB
Length = 177
Score = 135 bits (340), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Query: 226 EVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLS 285
E + +++ + +L + NA++ + E + ++ V EE L
Sbjct: 25 EFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSID-----VNEEEELLY 79
Query: 286 IKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQ 345
I + D G G+P + +E++F Y GGT G GL I++ + GD+
Sbjct: 80 ISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGT-----GLGLAIAKEMVQAHGGDIW 134
Query: 346 LFSMEGFGT 354
S+EG GT
Sbjct: 135 ADSIEGKGT 143
>4I5S-A nrPDB
Length = 450
Score = 93.2 bits (230), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 223 EIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEE 282
++ E+ + + + + ++ + NA++ + + + + I + +
Sbjct: 306 KVYEIIRDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVT-------ITMQTTDT 358
Query: 283 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 342
L + +SD+G G+P + + +F Y GGT G GL I++ K +G
Sbjct: 359 QLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGT-----GLGLAIAKEIVKQHKG 413
Query: 343 DLQLFSMEGFGTDAVIYL 360
+ S EG G+ I L
Sbjct: 414 FIWANSEEGEGSTFTIVL 431
>4U7O-A nrPDB
Length = 277
Score = 88.6 bits (218), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLF 304
+L + NA++ + + + + + I +SD+G G+P + +F
Sbjct: 157 FTQVLDNIMNNAIKYSPDGGVVT-------CRLLETHNQVIISISDQGLGIPRADLGHVF 209
Query: 305 SYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
+ GGT G GL IS+ + G + + S+EG G+ I L
Sbjct: 210 DRFFRVDKARSRAQGGT-----GLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISL 260
>6AZR-A nrPDB
Length = 259
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 235 PIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGG 294
P+ P+ + +L L N ++ + + +K+++ + + I + D G G
Sbjct: 130 PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKY----VKVILDEKDGGVLIIVEDNGIG 185
Query: 295 VPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGT 354
+P +R+F Y + GT G GL I++ + G + + S G G+
Sbjct: 186 IPDHAKDRIFEQFYRVDSSLTYEVPGT-----GLGLAITKEIVELHGGRIWVESEVGKGS 240
Query: 355 DAVIYL 360
+++
Sbjct: 241 RFFVWI 246
>5LFK-A nrPDB
Length = 298
Score = 57.8 bits (138), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 242 PSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIE 301
P+ L L + +NA+R + I++ A+ ++ ++I + D G GV E
Sbjct: 188 PNALESALENIVRNALRYS---------HTKIEVGFAVDKDGITITVDDDGPGVSPEDRE 238
Query: 302 RLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
++F Y T +GGT G GL I + +G ++ G VI+L
Sbjct: 239 QIFRPFYRTDEARDRESGGT-----GLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWL 292
>4PL9-A nrPDB
Length = 183
Score = 54.7 bits (130), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
Query: 231 NATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEED------- 283
P +V L ++ + NA++ + + S+++ + D
Sbjct: 40 APDLPEFVVGDEKRLMQIILNIVGNAVKFSKQG---SISVTALVTKSDTRAADFFVVPTG 96
Query: 284 ----LSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKY 339
L +K+ D G G+ + I ++F+ T +GG+ G GL IS+ +
Sbjct: 97 SHFYLRVKVKDSGAGINPQDIPKIFTKFAQTQSLATRSSGGS-----GLGLAISKRFVNL 151
Query: 340 FQGDLQLFSME-GFGTDAVIYLKA 362
+G++ + S G G A+ +K
Sbjct: 152 MEGNIWIESDGLGKGCTAIFDVKL 175
>4GCZ-A nrPDB
Length = 385
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLF 304
+ +L LF+NA+ A +S L + ++ + +++SD G G I LF
Sbjct: 269 IQQVLVNLFRNALEAMAQSQRRELVVTNTPA----ADDMIEVEVSDTGSGFQDDVIPNLF 324
Query: 305 SYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFS 348
++T T G G GL ISR + G + S
Sbjct: 325 QTFFTTKDT-----------GMGVGLSISRSIIEAHGGRMWAES 357
>4Q20-A nrPDB
Length = 268
Score = 51.6 bits (122), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLF 304
L L L +NA+R T +L+ ALGE L +SD G GVP +F
Sbjct: 156 LAQTLDHLVENALRQTPPGGRVTLS-----ARRALGEVRL--DVSDTGRGVPFHVQAHIF 208
Query: 305 SYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
G P G GL + + + G + L S G G+ +L
Sbjct: 209 DRFVGRD-------RGGP----GLGLALVKALVELHGGWVALESEPGNGSTFTCHL 253
>6BLK-C nrPDB
Length = 158
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 235 PIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGG 294
P ++ S L + + NA + + + L + G +L I +D+G G
Sbjct: 37 PWQVIGDSSGLGRAVLNVLDNAAKWSPPGGRVGVRL----YQIDPGHAELVI--TDQGPG 90
Query: 295 VPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLF 347
+P ++ +F + +A + G G GL I + G L++
Sbjct: 91 IPPQERHLVFERFFRSASARS-------MPGSGLGLAIVKQVVLKHGGALRVD 136
>1ID0-A nrPDB
Length = 152
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 19/124 (15%)
Query: 247 HMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSY 306
++ + NA + +E ++I +E L I + D G G+PL K E +F
Sbjct: 47 EVMGNVLDNACKYCLEF---------VEISARQTDEHLYIVVEDDGPGIPLSKREVIFDR 97
Query: 307 MYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQL-FSMEGFGTDAVIYLKALST 365
T G G GL ++R + ++G + SM G VI+ + S
Sbjct: 98 GQRVD---------TLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSA 148
Query: 366 DSVE 369
E
Sbjct: 149 PKDE 152
>3D36-A nrPDB
Length = 244
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 247 HMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSY 306
L + KNA+ A +++ V++ + I+++D G G+ ++ERL
Sbjct: 126 QCLLNVMKNAIEAMPNGG-------TLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEP 178
Query: 307 MYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
++T + G G G+ + + G +++ S GT IYL
Sbjct: 179 YFTTK----------GVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYL 222
>1R62-A nrPDB
Length = 160
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 18/169 (10%)
Query: 199 DVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMR 258
V + + +A+ + M PD ++ + + + P + + P + +L + +NA++
Sbjct: 5 RVTESIHKVAERVVTLVSMELPD-NVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQ 62
Query: 259 A-TVESHESSL-TLPPIKIMVALGEEDLS--IKMSDRGGGVPLRKIERLFSYMYSTAPTP 314
A E E L T ++ + L+ I + D G G+P + LF P
Sbjct: 63 ALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLF--------YP 114
Query: 315 QPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKAL 363
G G GL I+R G ++ S G T+ +YL
Sbjct: 115 MVSGREG---GTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159
>1MX0-A nrPDB
Length = 472
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 226 EVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVAL---GEE 282
E N LY + EL +N++ AT + LP IKI + L +
Sbjct: 16 EFFKRNPELAG-FPNPARALYQTVRELIENSLDAT----DVHGILPNIKITIDLIDDARQ 70
Query: 283 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQ 341
+ + D G G+P +++ F + ++ T G +G G+ + LY++ Q
Sbjct: 71 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGM----YGLGVKAAVLYSQMHQ 125
>2ZBK-B nrPDB
Length = 530
Score = 45.9 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 226 EVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVAL---GEE 282
E N LY + EL +N++ AT + LP IKI + L +
Sbjct: 14 EFFKRNPELAG-FPNPARALYQTVRELIENSLDAT----DVHGILPNIKITIDLIDDARQ 68
Query: 283 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQ 341
+ + D G G+P +++ F + ++ T G +G G+ + LY++ Q
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGM----YGLGVKAAVLYSQMHQ 123
>6DK7-A nrPDB
Length = 227
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 24/163 (14%)
Query: 196 SVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKN 255
++ +++D D+ ++ ++ I+ ++ T P + P+ L ++ L N
Sbjct: 74 DLNALIEDCLDIFRVKAEQQ-------RIELISFTQPQVPRVIGGDPTRLRQVVLSLLDN 126
Query: 256 AMRATVESHESSLTLPPIKIMVALGEE----DLSIKMSDRGGGVPLRKIERLFSYMYSTA 311
A + T E I ++VAL ++ L I + D G ++ E L TA
Sbjct: 127 AFKQTEEG--------EILLVVALDDQGETPRLRIAVQDSGHPFDAKEREALL-----TA 173
Query: 312 PTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGT 354
G GL I+R + G+ + S GT
Sbjct: 174 ELHSGDFLSASKLGSHLGLIIARQLVRLMGGEFGIQSGSSQGT 216
>3CGZ-A nrPDB
Length = 157
Score = 42.8 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 247 HMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSY 306
++ + NA + +E ++I ++ L I + D G G+P K +F
Sbjct: 52 EVMGNVLDNACKYCLEF---------VEISARQTDDHLHIFVEDDGPGIPHSKRSLVFDR 102
Query: 307 MYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQL-FSMEGFGTDAVIYLKALST 365
T G G GL ++R + + G + S+ G V++ + T
Sbjct: 103 GQRAD---------TLRPGQGVGLAVAREITEQYAGQIIASDSLLGGARMEVVFGRQHPT 153
Query: 366 DSVE 369
E
Sbjct: 154 QKEE 157
>1YSR-A nrPDB
Length = 150
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 20/129 (15%)
Query: 220 PDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVAL 279
PDL++ V + +V +P+ L + NA++ ++L +++
Sbjct: 26 PDLDVSLV----PSPTCIIVGLPAGLRLAVDNAIANAVK----HGGATL----VQLSAVS 73
Query: 280 GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKY 339
+ I + D G GVP + + +F +G G GL + A+
Sbjct: 74 SRAGVEIAIDDNGSGVPEGERQVVFERFSR--------GSTASHSGSGLGLALVAQQAQL 125
Query: 340 FQGDLQLFS 348
G L +
Sbjct: 126 HGGTASLEN 134
>3JZ3-A nrPDB
Length = 222
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 19/104 (18%)
Query: 255 NAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP 314
NA+R + + + V L ++ ++ D G GV + R+ Y
Sbjct: 128 NAVRYSPQGS---------VVDVTLNADNFIVR--DNGPGVTPEALARIGERFYR----- 171
Query: 315 QPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVI 358
PG T G G GL I + AK +++ + E G +A +
Sbjct: 172 PPGQTAT---GSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKV 212
>5IDM-A nrPDB
Length = 179
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 285 SIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDL 344
I++SD G G+P + ++F ++T P + G G GL K G +
Sbjct: 97 FIEVSDDGPGIPPDVMGKIFDPFFTTKPVGE---------GTGLGLATVYGIVKQSDGWI 147
Query: 345 QLFSMEGFGTDAVIYL 360
+ S G I+L
Sbjct: 148 HVHSRPNEGAAFRIFL 163
>5IDJ-A nrPDB
Length = 242
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 285 SIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDL 344
I++SD G G+P + ++F ++T P + G G GL K G +
Sbjct: 171 FIEVSDDGPGIPPDVMGKIFDPFFTTKPVGE---------GTGLGLATVYGIVKQSDGWI 221
Query: 345 QLFSMEGFGTDAVIYL 360
+ S G I+L
Sbjct: 222 HVHSRPNEGAAFRIFL 237
>4XIV-A nrPDB
Length = 252
Score = 35.5 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 27/137 (19%)
Query: 249 LFELFKNAMRATVESHESSLTL--PPIKIMV---ALGEEDLSIKMSDRGGGVPLRKIER- 302
L L +NA+ +E E + PPI ++ ++ I++ D G G+ KI R
Sbjct: 115 LLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRK 174
Query: 303 -------------------LFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGD 343
+ ++++ P + ++G G G+ + + + G
Sbjct: 175 AIEKGLIDESKAATLSDQEILNFLF--VPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGS 232
Query: 344 LQLFSMEGFGTDAVIYL 360
+ + S + GT I L
Sbjct: 233 ISIESEKDKGTKVTIRL 249
>1I5D-A nrPDB
Length = 191
Score = 35.5 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 27/137 (19%)
Query: 249 LFELFKNAMRATVESHESSLTL--PPIKIMV---ALGEEDLSIKMSDRGGGVPLRKIER- 302
L L +NA+ +E E + PPI ++ ++ I++ D G G+ KI R
Sbjct: 54 LLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRK 113
Query: 303 -------------------LFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGD 343
+ ++++ P + ++G G G+ + + + G
Sbjct: 114 AIEKGLIDESKAATLSDQEILNFLF--VPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGS 171
Query: 344 LQLFSMEGFGTDAVIYL 360
+ + S + GT I L
Sbjct: 172 ISIESEKDKGTKVTIRL 188
>1XRE-A nrPDB
Length = 217
Score = 34.7 bits (78), Expect = 0.084, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 288 MSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYG 329
MS RGGG P + ++ Y ++T + ++ FG G
Sbjct: 99 MSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSG 140
>3JA6-C nrPDB
Length = 379
Score = 34.3 bits (77), Expect = 0.086, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 27/137 (19%)
Query: 249 LFELFKNAMRATVESHESSLTL--PPIKIMV---ALGEEDLSIKMSDRGGGVPLRKIER- 302
L L +NA+ +E E + PPI ++ ++ I++ D G G+ KI R
Sbjct: 111 LLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRK 170
Query: 303 -------------------LFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGD 343
+ ++++ P + ++G G G+ + + + G
Sbjct: 171 AIEKGLIDESKAATLSDQEILNFLF--VPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGS 228
Query: 344 LQLFSMEGFGTDAVIYL 360
+ + S + GT I L
Sbjct: 229 MGIESEKDKGTKVTIRL 245
>4JPB-A nrPDB
Length = 319
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 249 LFELFKNAMRATVESHESSLTL--PPIKIMV---ALGEEDLSIKMSDRGGGVPLRKIER- 302
L L +NA+ +E E + PPI ++ ++ I++ D G G+ KI R
Sbjct: 52 LLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRK 111
Query: 303 -------------------LFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGD 343
+ +++ P + ++G G G+ + + + G
Sbjct: 112 AIEKGLIDESKAATLSDQEILNFL---VPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGS 168
Query: 344 LQLFSMEGFGTDAVIYL 360
+ + S + GT I L
Sbjct: 169 ISIESEKDKGTKVTIRL 185
>5CPH-A nrPDB
Length = 212
Score = 32.4 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERL 303
L+H+++E+ N++ + + + I++++ E+D IK++D G G+P+ E++
Sbjct: 45 LHHLVWEIVDNSIDEALAGYANQ-----IEVVI---EKDNWIKVTDNGRGIPVDIQEKM 95
>4URM-A nrPDB
Length = 231
Score = 32.4 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERL 303
L+H+++E+ N++ + + + I++++ E+D IK++D G G+P+ E++
Sbjct: 44 LHHLVWEIVDNSIDEALAGYANQ-----IEVVI---EKDNWIKVTDNGRGIPVDIQEKM 94
>5MMP-A nrPDB
Length = 234
Score = 31.2 bits (69), Expect = 0.85, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP 296
L+HM+FE+ NA+ + H K ++ D S+ + D G G+P
Sbjct: 50 LHHMVFEVVDNAIDEALAGH--------CKEIIVTIHADNSVSVQDDGRGIP 93
>4PU9-A nrPDB
Length = 398
Score = 31.2 bits (69), Expect = 0.85, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP 296
L+HM+FE+ NA+ + H K ++ D S+ + D G G+P
Sbjct: 42 LHHMVFEVVDNAIDEALAGH--------CKEIIVTIHADNSVSVQDDGRGIP 85
>4XEM-A nrPDB
Length = 475
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 328 YGLPISRLYAKYFQGD 343
+G+PI RLY YF GD
Sbjct: 146 FGIPIERLYVTYFGGD 161
>1TID-A nrPDB
Length = 136
Score = 30.5 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 243 SHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIER 302
+ + ++ E NA+ + + + + I V + + + + + D G G+P IE
Sbjct: 38 TEIKTVVSEAVTNAI---IHGYNNDPN-GIVSISVIIEDGVVHLTVRDEGVGIP--DIEE 91
Query: 303 LFSYMYSTAPTPQPGTGG 320
+++T P + G
Sbjct: 92 ARQPLFTTKPELERSGMG 109
>5AA5-C nrPDB
Length = 579
Score = 30.5 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 305 SYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360
+Y + +P G LA G PI+RL+A G + + ++ G IYL
Sbjct: 369 NYTWVMSPRWLDKRTGDHLALDTGGGPIARLWATALAGLVDIGYIKSTGHSVKIYL 424
>4KP4-A nrPDB
Length = 236
Score = 30.1 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 16/125 (12%)
Query: 236 IHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGV 295
I + P + + + NA R IK+ ++ D G G+
Sbjct: 114 IEVKMHPLSIKRAVANMVVNAARYGN---------GWIKVSSGTEPNRAWFQVEDDGPGI 164
Query: 296 PLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTD 355
+ + LF ++G G GL I + G L+L + E G
Sbjct: 165 APEQRKHLFQPFVRGDSART-------ISGTGLGLAIVQRIVDNHNGMLELGTSERGGLS 217
Query: 356 AVIYL 360
+L
Sbjct: 218 IRAWL 222
>4CTI-A nrPDB
Length = 273
Score = 30.1 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 16/125 (12%)
Query: 236 IHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGV 295
I + P + + + NA R IK+ ++ D G G+
Sbjct: 151 IEVKMHPLSIKRAVANMVVNAARYGN---------GWIKVSSGTEPNRAWFQVEDDGPGI 201
Query: 296 PLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTD 355
+ + LF ++G G GL I + G L+L + E G
Sbjct: 202 APEQRKHLFQPFVRGDSART-------ISGTGLGLAIVQRIVDNHNGMLELGTSERGGLS 254
Query: 356 AVIYL 360
+L
Sbjct: 255 IRAWL 259
>1BXD-A nrPDB
Length = 161
Score = 30.1 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 16/125 (12%)
Query: 236 IHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGV 295
I + P + + + NA R IK+ ++ D G G+
Sbjct: 39 IEVKMHPLSIKRAVANMVVNAARYGN---------GWIKVSSGTEPNRAWFQVEDDGPGI 89
Query: 296 PLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTD 355
+ + LF ++G G GL I + G L+L + E G
Sbjct: 90 APEQRKHLFQPFVRGDSART-------ISGTGLGLAIVQRIVDNHNGMLELGTSERGGLS 142
Query: 356 AVIYL 360
+L
Sbjct: 143 IRAWL 147
>4OKD-A nrPDB
Length = 840
Score = 29.7 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 359 YLKALSTDSVERLPVYNKSAWRHYQTIQEAGDW 391
YLK+L +++E LPV+ + +Y I + +
Sbjct: 257 YLKSLGVNAIELLPVFEFNELEYYSQIPGSDQY 289
>3ZKD-A nrPDB
Length = 432
Score = 29.7 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 245 LYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP 296
L+H+++E+ NA+ + + +++ + + ED ++++D G G+P
Sbjct: 47 LHHLIWEVVDNAVDEAMAGYATTVNVVLL--------EDGGVEVADDGRGIP 90
>4KPA-A nrPDB
Length = 494
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 103 PEDHRTLSQFTDALVTIR----NRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRF 158
ED + ++ D ++ R + +D++ M G KD +P+ ++NI+Y + F
Sbjct: 230 QEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNG----KDPETGEPLDDENIRYQIITF 285
Query: 159 YLS 161
++
Sbjct: 286 LIA 288
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.131 0.357
Lambda K H
0.267 0.0401 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,548,413
Number of Sequences: 36641
Number of extensions: 619946
Number of successful extensions: 1734
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 71
length of query: 407
length of database: 10,336,785
effective HSP length: 99
effective length of query: 308
effective length of database: 6,709,326
effective search space: 2066472408
effective search space used: 2066472408
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 60 (27.8 bits)