BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q61805
         (481 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4M4D-A nrPDB                                                          939   0.0  
1BP1-A nrPDB                                                          405   e-113
4F2A-A nrPDB                                                          101   7e-22
4QNN-A nrPDB                                                           35   0.10 
4NQY-A nrPDB                                                           29   4.2  
1TC5-A nrPDB                                                           28   6.5  
3DGA-C nrPDB                                                           28   8.6  
4DP3-A nrPDB                                                           28   9.6  

>4M4D-A nrPDB
          Length = 467

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 25  GVNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQ 84
           GVNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQ
Sbjct: 4   GVNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQ 63

Query: 85  NCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLL 144
           NCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLL
Sbjct: 64  NCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLL 123

Query: 145 GMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKS 204
           GMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKS
Sbjct: 124 GMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKS 183

Query: 205 VTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPT 264
           VTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPT
Sbjct: 184 VTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPT 243

Query: 265 PTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPF 324
           PTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPF
Sbjct: 244 PTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPF 303

Query: 325 TPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVV 384
           TPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVV
Sbjct: 304 TPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVV 363

Query: 385 TNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAEL 444
           TNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAEL
Sbjct: 364 TNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAEL 423

Query: 445 AQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQYMRV 481
           AQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQYMRV
Sbjct: 424 AQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQYMRV 460


>1BP1-A nrPDB
          Length = 456

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/455 (43%), Positives = 296/455 (65%), Gaps = 2/455 (0%)

Query: 26  VNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQN 85
           VNPGVV RI+ KGL YA+++G  ALQ+EL +I +PD+S  FKIK +G+G Y F+S++I+ 
Sbjct: 1   VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIRE 60

Query: 86  CELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLG 145
            +L  S + ++P  GL  +IS+++I + GKWK +K FLK+ G+FDL ++G++IS DL LG
Sbjct: 61  FQLPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLG 120

Query: 146 MDP-SGRPTVSASGCSSRICDLDVHIS-GNVGWLLNLFHNQIESKLQKVLENKVCEMIQK 203
            +P SG+PT++ S CSS I  + VHIS   VGWL+ LFH +IES L+  + ++VCE +  
Sbjct: 121 SNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTN 180

Query: 204 SVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATP 263
           SV+S LQPY QTLPV  +ID+V GI+Y LVA P   A+ LDV  KGE ++ NH +P    
Sbjct: 181 SVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPPPFA 240

Query: 264 TPTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRP 323
            P M  P    +MVY  +SDY FN A  VY +AG L  ++ DDM+P +S  RL TK F  
Sbjct: 241 PPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGT 300

Query: 324 FTPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGV 383
           F P++ KK+P+MK+++  +  + P L+V P  L+  P ++++ F +LP SA   +F +G+
Sbjct: 301 FLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGM 360

Query: 384 VTNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAE 443
            T     ++  ++++ G L  D+  + L  S +G F V L Q  +NY +   + P VN +
Sbjct: 361 HTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEK 420

Query: 444 LAQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQY 478
           L +GFPLP P  +QL+++  Q  ++FL  GA+V Y
Sbjct: 421 LQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVY 455


>4F2A-A nrPDB
          Length = 476

 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 29  GVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQNCEL 88
           G+V RIT   L     E    +Q    + + PD +G+  +  +G+ +Y  H+++I +  +
Sbjct: 10  GIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSI 69

Query: 89  RGSSLKLLPGQGLSLAISDSSIGVRGKWK---VRKSFLKLHGSFDLDV-KGVTISVDLLL 144
             S ++L+  + + ++I D S+  +G  K       +L +  S D ++   + + ++  L
Sbjct: 70  ASSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINTQL 129

Query: 145 GMDPSGRPTVSASGCSSRICDLDVHISGNV--GWLLNLFHNQIESKLQKVLENKVCEMIQ 202
             D SGR    A  C      L +H+ G    GW+  LF N I   L+ VL+ ++C+ I 
Sbjct: 130 TAD-SGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEI- 187

Query: 203 KSVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVAT 262
             +++ +  ++QT   +   D  +G+D SL   P   A  L+   KG    ++    +  
Sbjct: 188 NVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPL 247

Query: 263 PTPTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDD 306
           PT + +L  DS+ M+YF  S+  F+  ++V  Q G L  S+  D
Sbjct: 248 PTFSPTLLGDSR-MLYFWFSERVFHSLAKVAFQDGRLMLSLMGD 290


>4QNN-A nrPDB
          Length = 300

 Score = 34.7 bits (78), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 7/44 (15%)

Query: 143 LLGMDPSGRPTVSASGCSSRICDLD------VHISGNVGWLLNL 180
           ++G+DP+G P+  ++ CS RIC  D      +H S ++G L+ L
Sbjct: 161 IIGLDPAG-PSFKSNDCSERICKTDAHYVQIIHTSNHLGTLVTL 203


>4NQY-A nrPDB
          Length = 443

 Score = 29.3 bits (64), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 196 KVCEMIQKSVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVM 246
           KV E I  ++T DLQPY+ +  V   I   +G+D +   A Q   + +  M
Sbjct: 174 KVPETIYFNITGDLQPYVTSKDVILSIIGEVGVDGATYKACQFGGETVKKM 224


>1TC5-A nrPDB
          Length = 194

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 303 ITDDMLPHDSGIRLNTKAFRPFTPQ 327
           ITD+ L H  G+ L+TK F  F+P+
Sbjct: 53  ITDEALRHAVGVLLHTKIFTHFSPE 77


>3DGA-C nrPDB
          Length = 328

 Score = 28.1 bits (61), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 240 AQVLDVMFKGEIFNRNH-------RSPVATPTPTMSLPEDSKQMVYFAISDYAFNIASRV 292
           AQ + V+    ++N NH        + +  P PT+ L  D K +  F ISD  F I + V
Sbjct: 261 AQFIHVLGNAHVYN-NHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISD--FTIQNYV 317

Query: 293 YHQ 295
           +H+
Sbjct: 318 HHE 320


>4DP3-A nrPDB
          Length = 608

 Score = 28.1 bits (61), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 240 AQVLDVMFKGEIFNRNH-------RSPVATPTPTMSLPEDSKQMVYFAISDYAFNIASRV 292
           AQ + V+    ++N NH        + +  P PT+ L  D K +  F ISD  F I + V
Sbjct: 541 AQFIHVLGNAHVYN-NHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISD--FTIQNYV 597

Query: 293 YHQA 296
           +H+ 
Sbjct: 598 HHEK 601


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4M4D-A nrPDB                                                          742   0.0  
1BP1-A nrPDB                                                          688   0.0  
4F2A-A nrPDB                                                          393   e-110

Sequences not found previously or not previously below threshold:

4C1O-A nrPDB                                                           36   0.031
2ZUE-A nrPDB                                                           33   0.34 
5O9X-A nrPDB                                                           31   1.0  
6BT2-A nrPDB                                                           31   1.3  
3MZ1-A nrPDB                                                           31   1.4  
5L51-A nrPDB                                                           30   1.7  
3RKO-N nrPDB                                                           30   2.6  
4RS5-D nrPDB                                                           29   4.5  
6CVZ-A nrPDB                                                           29   5.8  
3ZH3-A nrPDB                                                           28   7.7  


CONVERGED!
>4M4D-A nrPDB
          Length = 467

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 25  GVNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQ 84
           GVNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQ
Sbjct: 4   GVNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQ 63

Query: 85  NCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLL 144
           NCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLL
Sbjct: 64  NCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLL 123

Query: 145 GMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKS 204
           GMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKS
Sbjct: 124 GMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKS 183

Query: 205 VTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPT 264
           VTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPT
Sbjct: 184 VTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPT 243

Query: 265 PTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPF 324
           PTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPF
Sbjct: 244 PTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPF 303

Query: 325 TPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVV 384
           TPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVV
Sbjct: 304 TPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVV 363

Query: 385 TNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAEL 444
           TNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAEL
Sbjct: 364 TNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAEL 423

Query: 445 AQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQYMRV 481
           AQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQYMRV
Sbjct: 424 AQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQYMRV 460


>1BP1-A nrPDB
          Length = 456

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 199/455 (43%), Positives = 296/455 (65%), Gaps = 2/455 (0%)

Query: 26  VNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQN 85
           VNPGVV RI+ KGL YA+++G  ALQ+EL +I +PD+S  FKIK +G+G Y F+S++I+ 
Sbjct: 1   VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIRE 60

Query: 86  CELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLG 145
            +L  S + ++P  GL  +IS+++I + GKWK +K FLK+ G+FDL ++G++IS DL LG
Sbjct: 61  FQLPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLG 120

Query: 146 MDP-SGRPTVSASGCSSRICDLDVHIS-GNVGWLLNLFHNQIESKLQKVLENKVCEMIQK 203
            +P SG+PT++ S CSS I  + VHIS   VGWL+ LFH +IES L+  + ++VCE +  
Sbjct: 121 SNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTN 180

Query: 204 SVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATP 263
           SV+S LQPY QTLPV  +ID+V GI+Y LVA P   A+ LDV  KGE ++ NH +P    
Sbjct: 181 SVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPPPFA 240

Query: 264 TPTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRP 323
            P M  P    +MVY  +SDY FN A  VY +AG L  ++ DDM+P +S  RL TK F  
Sbjct: 241 PPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGT 300

Query: 324 FTPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGV 383
           F P++ KK+P+MK+++  +  + P L+V P  L+  P ++++ F +LP SA   +F +G+
Sbjct: 301 FLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGM 360

Query: 384 VTNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAE 443
            T     ++  ++++ G L  D+  + L  S +G F V L Q  +NY +   + P VN +
Sbjct: 361 HTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEK 420

Query: 444 LAQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQY 478
           L +GFPLP P  +QL+++  Q  ++FL  GA+V Y
Sbjct: 421 LQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVY 455


>4F2A-A nrPDB
          Length = 476

 Score =  393 bits (1010), Expect = e-110,   Method: Composition-based stats.
 Identities = 103/462 (22%), Positives = 198/462 (42%), Gaps = 26/462 (5%)

Query: 29  GVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQNCEL 88
           G+V RIT   L     E    +Q    + + PD +G+  +  +G+ +Y  H+++I +  +
Sbjct: 10  GIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSI 69

Query: 89  RGSSLKLLPGQGLSLAISDSSIGVRGKWK---VRKSFLKLHGSFDLDV-KGVTISVDLLL 144
             S ++L+  + + ++I D S+  +G  K       +L +  S D ++   + + ++  L
Sbjct: 70  ASSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINTQL 129

Query: 145 GMDPSGRPTVSASGCSSRICDLDVHISGNV--GWLLNLFHNQIESKLQKVLENKVCEMIQ 202
             D SGR    A  C      L +H+ G    GW+  LF N I   L+ VL+ ++C+ I 
Sbjct: 130 TAD-SGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEI- 187

Query: 203 KSVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVAT 262
             +++ +  ++QT   +   D  +G+D SL   P   A  L+   KG    ++    +  
Sbjct: 188 NVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPL 247

Query: 263 PTPTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDD---MLPHDSGIRLNTK 319
           PT + +L  DS+ M+YF  S+  F+  ++V  Q G L  S+  D    +    G   N +
Sbjct: 248 PTFSPTLLGDSR-MLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTNQE 306

Query: 320 AFRPFTPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTS--AREP 377
            F+    ++   +P  + ++    +  P ++     + +   + ++     P    +   
Sbjct: 307 IFQ----EVVGGFPS-QAQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPDQQHSVAY 361

Query: 378 VFRLGVVTNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLY 437
            F   +VT V A  +++  K+   L  D        S +   +    Q+FL   +     
Sbjct: 362 TFEEDIVTTVQA--SYSKKKLFLSL-LDFQITPKTVSNLTESSSESIQSFLQSMITAVGI 418

Query: 438 PDVNAELAQGF-PLPLPRHIQLHDLD---FQIRKDFLYLGAN 475
           P+V + L   F  L   + + L D+       R  FL L  +
Sbjct: 419 PEVMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMD 460


>4C1O-A nrPDB
          Length = 727

 Score = 36.2 bits (82), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 27/174 (15%)

Query: 237 QAKAQVLDVMFKGEIFNRNHRSPVATPTPTMSLPEDS-----------KQMVYFAISDYA 285
             +   +  M K   FN +H    A  + T+  P  S           +Q VY  ++  +
Sbjct: 15  VPRGSHMASMPKNMFFNAHHSPVGAFASFTLGFPGKSGGLDLELGRPPRQNVYIGVASLS 74

Query: 286 FNIASRV--YHQAGYLNFSITDDMLPHDSGIRLNTKAFRPFTPQIYKKYPDMKLELLGTV 343
                 V  + +AG       DD         +      P  PQI   +P+  ++    V
Sbjct: 75  QPGMYEVLPFFEAG-------DD---ESKRYDIENPDPNPEKPQILVPFPNEMIQREFHV 124

Query: 344 VSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVVTNVFASLTFNNSK 397
            +        G+L+      ++  V  P +A+E   +  +V  V A LT +N+K
Sbjct: 125 STD---TWKAGDLTFTIYSPVKS-VPNPDTAKEEDLKFALVPAVIAELTIDNTK 174


>2ZUE-A nrPDB
          Length = 629

 Score = 32.7 bits (73), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 222 IDNVLG-----IDYSLVAAPQAKAQVLDVMFK---GEIFNRNHRSPVATPTPTMSLPEDS 273
           ID+ LG     ++  L   P+ + ++ D+M K   GE++ R     V       +     
Sbjct: 203 IDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGV 262

Query: 274 KQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPFTPQIYKKYP 333
           K  +    SD        +  +   L     +  +P D   R        F   + K +P
Sbjct: 263 KYDLLVWESDIVRRKLFEIALE---LLSKNENFYIPSDGKYR------GAFVMDLRKLFP 313

Query: 334 DMKLELLG 341
           DMK  +L 
Sbjct: 314 DMKNPILV 321


>5O9X-A nrPDB
          Length = 549

 Score = 31.2 bits (69), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 179 NLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYL---QTLPVTAEIDNVLGIDYSLVAA 235
             ++ ++ +  ++V+       ++ S+T D    +   +   +   +    G+D  +V  
Sbjct: 189 QGYYEKLAAAFKRVMRGV---KVKGSLTVDCANGVGGPKLRELIKYLPEDTGLDIKIVND 245

Query: 236 PQAKAQVLDVMFKGEIFNRNHRSPVATPTPTM----SLPEDSKQMVYFAISD 283
                  L+     +      R+P ++    +    SL  D+ +++Y+ + +
Sbjct: 246 DVINPDSLNFECGADYVKTKQRAPPSSKASILDRCASLDGDADRILYYFLDE 297


>6BT2-A nrPDB
          Length = 313

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 24/169 (14%)

Query: 123 LKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFH 182
            KL  S ++ +  +T+  + +         T+       + C    H+    GW      
Sbjct: 127 FKLVNSANIRLTAMTLKTNQVAIAQ-----TLECKESGRQFCIAVTHLKARTGW------ 175

Query: 183 NQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQV 242
                  ++    + C+++Q      LQ   Q   +   +      + +        +  
Sbjct: 176 -------ERFRSAQGCDLLQN-----LQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSS 223

Query: 243 LDVMFKGEIFNRNHRSPVATPTPTMSLPEDSKQMV-YFAISDYAFNIAS 290
           L++    ++ + + +S     T  +    + +  + Y   S +A N+ S
Sbjct: 224 LNLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALNVRS 272


>3MZ1-A nrPDB
          Length = 300

 Score = 30.8 bits (68), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 23/116 (19%)

Query: 241 QVLDVMFKGEIFNRNHRSPVATPTPTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLN 300
           Q L+   + ++ NR  R  + TP             +Y+   + A  + S +    G L+
Sbjct: 34  QGLEAHLRTKLLNRTTRRVLVTP----------DGALYY---ERAARLLSDLDELDGSLS 80

Query: 301 FSITDDMLPHDSGIRLNT-KAFR-----PFTPQIYKKYPDMKLELLGTVVSAPILN 350
              T   LP    +R+ T  AF      P  P+ +KKYPD++++L  +  +   L 
Sbjct: 81  ---TAQSLPK-GRLRVETASAFANLVIIPALPEFHKKYPDIQIDLGVSDRTIDYLA 132


>5L51-A nrPDB
          Length = 324

 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 309 PHDSGIRLNTKAFRPFTPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIE-GF 367
           PH S  +++  A   +T  I KKYP  ++  +    +   L+   G  + A   E     
Sbjct: 241 PHFSAYKVSKAALNAYTRIIAKKYPSFRINAVCPGYTKTDLSYGHGQFTDAEAAEAPVKL 300

Query: 368 VILPTSAREPVF 379
            +LP       F
Sbjct: 301 ALLPQGGPSGCF 312


>3RKO-N nrPDB
          Length = 485

 Score = 30.0 bits (66), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 25/176 (14%)

Query: 282 SDYAFNIASRVYHQAGYLNF-----SITDDMLPHDS------------GIRLNTKAFRPF 324
           S +     + VY Q+G L+F     ++ D ML                G +L+   F  +
Sbjct: 167 SSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLW 226

Query: 325 TPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGF-VILPTSAREPVFRLGV 383
           TP +Y+  P      L T     I  V       AP  + E   V+L   A   +    +
Sbjct: 227 TPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASI----I 282

Query: 384 VTNVFASLTFNNSKVTG---MLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSL 436
             N+ A    N  ++ G   + H     V LI  + G  ++     +L  YL +SL
Sbjct: 283 FGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSL 338


>4RS5-D nrPDB
          Length = 313

 Score = 29.3 bits (64), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 124 KLHGSFDLDVKGVTISVDLLLGMDPSGRPT 153
            L G  DL ++G ++     +GM PS RPT
Sbjct: 88  GLVGEIDLPLEGTSVKRGTSVGMKPSPRPT 117


>6CVZ-A nrPDB
          Length = 351

 Score = 28.9 bits (63), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 13/86 (15%)

Query: 86  CELRGSSLKLLPGQGLSLAISDSSIG-----------VRG-KWKVRKSFLKLHGSFDLDV 133
                     LPG G+ + +S +++            +RG  +      L L  S D  +
Sbjct: 41  ISQPSPQASFLPGFGVKM-LSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTI 99

Query: 134 KGVTISVDLLLGMDPSGRPTVSASGC 159
           K  ++  + ++    +GRP  S   C
Sbjct: 100 KLTSLETNTVVQTYNAGRPVWSCCWC 125


>3ZH3-A nrPDB
          Length = 419

 Score = 28.5 bits (62), Expect = 7.7,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 68/194 (35%), Gaps = 11/194 (5%)

Query: 190 QKVLENKVCEMIQKSVTSDLQPYLQTLPVTAEIDNVLGID-YSLVAAPQAKAQVLDVMFK 248
           + V+   +    + +++      +  +P     D+V+ +D    ++   +  +++++M  
Sbjct: 3   KIVINGGLPLQGEITISGAKNSVVALIPAIILADDVVTLDCVPDISDVASLVEIMELMGA 62

Query: 249 GEIFNRNHRSPVATPTPTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDML 308
                 +           + +P      +    + Y F  +         +      D+ 
Sbjct: 63  TVKRYDDVLEIDPRGVQNIPMPYGKINSLR---ASYYFYGSLLGRFGEATVGLPGGCDLG 119

Query: 309 PHDSGIRLNTKAFRPFTPQIYKKYPDMKLE-----LLGTVVSAPILNVSPGNLSLAPQME 363
           P    I L+ KAF         +  +MKL      L G  +    ++V     ++   ++
Sbjct: 120 PRP--IDLHLKAFEAMGATASYEGDNMKLSAKDTGLHGASIYMDTVSVGATINTMIAAVK 177

Query: 364 IEGFVILPTSAREP 377
             G  I+  +AREP
Sbjct: 178 ANGRTIIENAAREP 191


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.312    0.134    0.357 

Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,677,829
Number of Sequences: 36641
Number of extensions: 695197
Number of successful extensions: 1857
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1834
Number of HSP's gapped (non-prelim): 30
length of query: 481
length of database: 10,336,785
effective HSP length: 101
effective length of query: 380
effective length of database: 6,636,044
effective search space: 2521696720
effective search space used: 2521696720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 61 (28.1 bits)