BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q5CZR5
         (315 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4ZNQ-A nrPDB                                                          642   0.0  
1II2-A nrPDB                                                           32   0.47 
5F9Y-A nrPDB                                                           30   1.3  
3HQT-A nrPDB                                                           29   2.9  
5XIP-A nrPDB                                                           28   4.3  
1GM5-A nrPDB                                                           27   8.4  
1NL3-A nrPDB                                                           27   8.5  

>4ZNQ-A nrPDB
          Length = 335

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/315 (100%), Positives = 315/315 (100%)

Query: 1   MTYPTNLEIIGGQGGSSFSFTGENNGASLEKIWVWVGGWQIKAVRAWLSDGRDETFGVPS 60
           MTYPTNLEIIGGQGGSSFSFTGENNGASLEKIWVWVGGWQIKAVRAWLSDGRDETFGVPS
Sbjct: 21  MTYPTNLEIIGGQGGSSFSFTGENNGASLEKIWVWVGGWQIKAVRAWLSDGRDETFGVPS 80

Query: 61  GSHQEYVFTPGECFTSLSLWGNGAGTRLGAIKFKTNKGGEFFAHMTSWGLKTEYPMDVGS 120
           GSHQEYVFTPGECFTSLSLWGNGAGTRLGAIKFKTNKGGEFFAHMTSWGLKTEYPMDVGS
Sbjct: 81  GSHQEYVFTPGECFTSLSLWGNGAGTRLGAIKFKTNKGGEFFAHMTSWGLKTEYPMDVGS 140

Query: 121 GYCLGIVGRGGSDIDCMGFMFLNAVQSTVLTNVNYPTINQLIPKVATEEIKSVSFENKTS 180
           GYCLGIVGRGGSDIDCMGFMFLNAVQSTVLTNVNYPTINQLIPKVATEEIKSVSFENKTS
Sbjct: 141 GYCLGIVGRGGSDIDCMGFMFLNAVQSTVLTNVNYPTINQLIPKVATEEIKSVSFENKTS 200

Query: 181 VKQEQKVETSKKVIKTSSWSMTKSFSSTFSVEVSAGIPEIAEVSTGFSISFGVESTHSLE 240
           VKQEQKVETSKKVIKTSSWSMTKSFSSTFSVEVSAGIPEIAEVSTGFSISFGVESTHSLE
Sbjct: 201 VKQEQKVETSKKVIKTSSWSMTKSFSSTFSVEVSAGIPEIAEVSTGFSISFGVESTHSLE 260

Query: 241 QTDEKNETLTTTVEVPPKKKVDVHITIGRASFDLPYTGTVKITCKNGSVLQYETKGQYKG 300
           QTDEKNETLTTTVEVPPKKKVDVHITIGRASFDLPYTGTVKITCKNGSVLQYETKGQYKG
Sbjct: 261 QTDEKNETLTTTVEVPPKKKVDVHITIGRASFDLPYTGTVKITCKNGSVLQYETKGQYKG 320

Query: 301 VAYTDIKVNTVEKDL 315
           VAYTDIKVNTVEKDL
Sbjct: 321 VAYTDIKVNTVEKDL 335


>1II2-A nrPDB
          Length = 524

 Score = 31.6 bits (70), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 13/153 (8%)

Query: 85  GTRLGAIKFKTNKGGEFFA-HMTSWGLKTEYPMD--------VGSGYCLGIVGRGGSDID 135
           GTR     F +  GG F   H T +G +    M         + +GY  G   RG   + 
Sbjct: 370 GTRTARPIFSSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKRMP 429

Query: 136 C-MGFMFLNAVQSTVLTNVNY---PTINQLIPKVATEEIKSVSFENKTSVKQEQKVETSK 191
             +    ++A+    L    Y   P     IPK   +  + +    K      Q  ETSK
Sbjct: 430 LRVTRAIIDAIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWKDVRQFNETSK 489

Query: 192 KVIKTSSWSMTKSFSSTFSVEVSAGIPEIAEVS 224
           +++     S +  F++  S E+ + +P   E +
Sbjct: 490 ELVAMFQESFSARFAAKASQEMKSAVPRYVEFA 522


>5F9Y-A nrPDB
          Length = 511

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 86  TRLGAIKFKTNKGGEFFAHMTSWGLKT 112
           +++  ++F+  KG + +AH TSWGL T
Sbjct: 251 SKMFGVEFEDEKGNKEYAHQTSWGLTT 277


>3HQT-A nrPDB
          Length = 409

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 72  ECFTSLSLWGNGAGTRLGAIKFKTNKGGEFFAHMTSW 108
           EC  S S W    G      +  TN   +FFAHM+ W
Sbjct: 121 ECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLW 157


>5XIP-A nrPDB
          Length = 498

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 86  TRLGAIKFKTNKGGEFFAHMTSWGLKT 112
           +R+ +I+F+  KG +   H TSWG  T
Sbjct: 238 SRMFSIEFEDEKGAKQLVHQTSWGCTT 264


>1GM5-A nrPDB
          Length = 780

 Score = 27.3 bits (59), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 141 FLNAVQSTVLTNVNYPTINQLIPKVATEEIKSVSFENKTS-----VKQEQKVETSKKVIK 195
           FLN V+  +   VN   I+QL+ ++    +++   E K       VK+   +  ++K  +
Sbjct: 25  FLNEVEKMLKNQVNTRRIHQLLKELDDPLLENKDLEEKLQAFLDYVKEIPNLPEARKRYR 84

Query: 196 TS-SWSMTKSFSSTFSVEVSAGIPEIAEVSTGFSISFGVESTHSLEQTDEKNETLTTTVE 254
              S  M +   S F ++      E  ++ST    + GV      +      ETL   +E
Sbjct: 85  IQKSLEMIEKLRSWFLIDYLECSGEEVDLSTDIQYAKGVGPNRKKKLKKLGIETLRDLLE 144

Query: 255 VPPKKKVD 262
             P+   D
Sbjct: 145 FFPRDYED 152


>1NL3-A nrPDB
          Length = 922

 Score = 27.3 bits (59), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 135 DCMGFMFLNAVQSTVLTNVNYPTINQLIPKVATEEIKSVSFENKTSVKQEQKVETSKKVI 194
           D +   F  A   T+LT +N P    +  K+ T  IKS     +T V+Q Q  E  K V+
Sbjct: 618 DELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIKSA----QTQVEQ-QNFEVRKNVL 672

Query: 195 K 195
           K
Sbjct: 673 K 673


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4ZNQ-A nrPDB                                                          668   0.0  

Sequences not found previously or not previously below threshold:

5GAQ-A nrPDB                                                           34   0.11 
5F9Y-A nrPDB                                                           32   0.29 
1II2-A nrPDB                                                           32   0.47 
5XIP-A nrPDB                                                           30   1.4  
3UCF-A nrPDB                                                           29   2.5  
3HQT-A nrPDB                                                           29   2.7  
2OXV-A nrPDB                                                           29   3.4  


CONVERGED!
>4ZNQ-A nrPDB
          Length = 335

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/315 (100%), Positives = 315/315 (100%)

Query: 1   MTYPTNLEIIGGQGGSSFSFTGENNGASLEKIWVWVGGWQIKAVRAWLSDGRDETFGVPS 60
           MTYPTNLEIIGGQGGSSFSFTGENNGASLEKIWVWVGGWQIKAVRAWLSDGRDETFGVPS
Sbjct: 21  MTYPTNLEIIGGQGGSSFSFTGENNGASLEKIWVWVGGWQIKAVRAWLSDGRDETFGVPS 80

Query: 61  GSHQEYVFTPGECFTSLSLWGNGAGTRLGAIKFKTNKGGEFFAHMTSWGLKTEYPMDVGS 120
           GSHQEYVFTPGECFTSLSLWGNGAGTRLGAIKFKTNKGGEFFAHMTSWGLKTEYPMDVGS
Sbjct: 81  GSHQEYVFTPGECFTSLSLWGNGAGTRLGAIKFKTNKGGEFFAHMTSWGLKTEYPMDVGS 140

Query: 121 GYCLGIVGRGGSDIDCMGFMFLNAVQSTVLTNVNYPTINQLIPKVATEEIKSVSFENKTS 180
           GYCLGIVGRGGSDIDCMGFMFLNAVQSTVLTNVNYPTINQLIPKVATEEIKSVSFENKTS
Sbjct: 141 GYCLGIVGRGGSDIDCMGFMFLNAVQSTVLTNVNYPTINQLIPKVATEEIKSVSFENKTS 200

Query: 181 VKQEQKVETSKKVIKTSSWSMTKSFSSTFSVEVSAGIPEIAEVSTGFSISFGVESTHSLE 240
           VKQEQKVETSKKVIKTSSWSMTKSFSSTFSVEVSAGIPEIAEVSTGFSISFGVESTHSLE
Sbjct: 201 VKQEQKVETSKKVIKTSSWSMTKSFSSTFSVEVSAGIPEIAEVSTGFSISFGVESTHSLE 260

Query: 241 QTDEKNETLTTTVEVPPKKKVDVHITIGRASFDLPYTGTVKITCKNGSVLQYETKGQYKG 300
           QTDEKNETLTTTVEVPPKKKVDVHITIGRASFDLPYTGTVKITCKNGSVLQYETKGQYKG
Sbjct: 261 QTDEKNETLTTTVEVPPKKKVDVHITIGRASFDLPYTGTVKITCKNGSVLQYETKGQYKG 320

Query: 301 VAYTDIKVNTVEKDL 315
           VAYTDIKVNTVEKDL
Sbjct: 321 VAYTDIKVNTVEKDL 335


>5GAQ-A nrPDB
          Length = 310

 Score = 33.5 bits (75), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 175 FENKTSVKQEQKVETSKKVIKTSSWSMTKSFSSTFSVEVSAGIP-EIAEVSTGFSISFGV 233
           +EN+ S   +QK+  +K +   +S + T + + +    +S G   EI  V   +S S   
Sbjct: 26  YENRGSTSVDQKITITKGMKNVNSETRTVTATHSIGSTISTGDAFEIGSVEVSYSHSHE- 84

Query: 234 ESTHSLEQTD-EKNETLTTTVEVPPKKK 260
           ES  S+ +T+  +++ +  T+ +PP  K
Sbjct: 85  ESQVSMTETEVYESKVIEHTITIPPTSK 112


>5F9Y-A nrPDB
          Length = 511

 Score = 32.4 bits (72), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 86  TRLGAIKFKTNKGGEFFAHMTSWGLKT 112
           +++  ++F+  KG + +AH TSWGL T
Sbjct: 251 SKMFGVEFEDEKGNKEYAHQTSWGLTT 277


>1II2-A nrPDB
          Length = 524

 Score = 31.6 bits (70), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 83  GAGTRLGAIKFKTNKGGEFFA-HMTSWGLKTEYPMD--------VGSGYCLGIVGRGGSD 133
             GTR     F +  GG F   H T +G +    M         + +GY  G   RG   
Sbjct: 368 AGGTRTARPIFSSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKR 427

Query: 134 IDC-MGFMFLNAVQSTVLTNVNY---PTINQLIPKVATEEIKSVSFENKTSVKQEQKVET 189
           +   +    ++A+    L    Y   P     IPK   +  + +    K      Q  ET
Sbjct: 428 MPLRVTRAIIDAIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWKDVRQFNET 487

Query: 190 SKKVIKTSSWSMTKSFSSTFSVEVSAGIPEIAEVS 224
           SK+++     S +  F++  S E+ + +P   E +
Sbjct: 488 SKELVAMFQESFSARFAAKASQEMKSAVPRYVEFA 522


>5XIP-A nrPDB
          Length = 498

 Score = 30.1 bits (66), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 86  TRLGAIKFKTNKGGEFFAHMTSWGLKT 112
           +R+ +I+F+  KG +   H TSWG  T
Sbjct: 238 SRMFSIEFEDEKGAKQLVHQTSWGCTT 264


>3UCF-A nrPDB
          Length = 223

 Score = 29.3 bits (64), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 211 VEVSAGIPEIAEVSTGFSISFGVESTHSLEQTDEKNETLTTTVEVPPKKKV-DVHITIGR 269
           +E    I  +A   TG  IS      H  E     +  + T     P  KV DV +T  +
Sbjct: 26  LESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAK 85

Query: 270 ASFDLPYTGTVKITCKNGS 288
            +FD  + G V +  K+G+
Sbjct: 86  YAFDTKFWGAV-LAAKHGA 103


>3HQT-A nrPDB
          Length = 409

 Score = 28.9 bits (63), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 72  ECFTSLSLWGNGAGTRLGAIKFKTNKGGEFFAHMTSW 108
           EC  S S W    G      +  TN   +FFAHM+ W
Sbjct: 121 ECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLW 157


>2OXV-A nrPDB
          Length = 277

 Score = 28.5 bits (62), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 158 INQLIPKVATEEIKSVSFENKTSVKQEQKVETSKKVIKTSSWSMTKSFSSTFSVEVSAGI 217
           +++L+ K  + E   +SF  + S+K+ +  E  KK+      ++   F S  S++   GI
Sbjct: 38  VSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTL---FVSNSSIKPDGGI 94

Query: 218 PEIAEVSTGFSISFGVESTH 237
            E+ +    + +    E+ H
Sbjct: 95  VEVKDDYGEWRVVLVAEAKH 114


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.313    0.131    0.386 

Lambda     K      H
   0.267   0.0409    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,841,005
Number of Sequences: 36641
Number of extensions: 538898
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 26
length of query: 315
length of database: 10,336,785
effective HSP length: 97
effective length of query: 218
effective length of database: 6,782,608
effective search space: 1478608544
effective search space used: 1478608544
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)