BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q59289
         (659 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4MMI-A nrPDB                                                         1320   0.0  
5JMD-A nrPDB                                                          570   e-163
1U3W-A nrPDB                                                           32   1.1  
6D25-A nrPDB                                                           31   1.9  
4OJZ-A nrPDB                                                           30   3.0  
5YQ5-A nrPDB                                                           30   3.4  
2IW3-A nrPDB                                                           30   3.7  
1UU1-A nrPDB                                                           30   4.0  

>4MMI-A nrPDB
          Length = 643

 Score = 1320 bits (3415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/635 (99%), Positives = 634/635 (99%)

Query: 25  QSSSITRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPDFSNAEKP 84
           QSSS+TRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPDFSNAEKP
Sbjct: 1   QSSSVTRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPDFSNAEKP 60

Query: 85  ADIRQPIDKVTREMADKALVHQFQPHKGYGYFDYGKDINWQMWPVKDNEVRWQLHRVKWW 144
           ADIRQPIDKVTREMADKALVHQFQPHKGYGYFDYGKDINWQMWPVKDNEVRWQLHRVKWW
Sbjct: 61  ADIRQPIDKVTREMADKALVHQFQPHKGYGYFDYGKDINWQMWPVKDNEVRWQLHRVKWW 120

Query: 145 QAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQDNDKFVWRPLEVSDRVQSLPPTFS 204
           QAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQDNDKFVWRPLEVSDRVQSLPPTFS
Sbjct: 121 QAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQDNDKFVWRPLEVSDRVQSLPPTFS 180

Query: 205 LFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGNHRLFEAQRNLFAGVSFPEFKDSPR 264
           LFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGNHRLFEAQRNLFAGVSFPEFKDSPR
Sbjct: 181 LFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGNHRLFEAQRNLFAGVSFPEFKDSPR 240

Query: 265 WRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGSAKRVNLEKEFPQSYVQ 324
           WRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGSAKRVNLEKEFPQSYVQ
Sbjct: 241 WRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGSAKRVNLEKEFPQSYVQ 300

Query: 325 TVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQFASWARVFPANQAIKYFATDGKQG 384
           TVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQFASWARVFPANQAIKYFATDGKQG
Sbjct: 301 TVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQFASWARVFPANQAIKYFATDGKQG 360

Query: 385 KAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPPGEFHAQPDNGTFELFIKGRNFTPD 444
           KAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPPGEFHAQPDNGTFELFIKGRNFTPD
Sbjct: 361 KAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPPGEFHAQPDNGTFELFIKGRNFTPD 420

Query: 445 AGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMVITKARQNKWETGNNLDVLTYTNPS 504
           AGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMVITKARQNKWETGNNLDVLTYTNPS
Sbjct: 421 AGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMVITKARQNKWETGNNLDVLTYTNPS 480

Query: 505 YPNLDHQRSVLFINKKYFLVIDRAIGEATGNLGVHWQLKEDSNPVFDKTKNRVYTTYRDG 564
           YPNLDHQRSVLFINKKYFLVIDRAIGEATGNLGVHWQLKEDSNPVFDKTKNRVYTTYRDG
Sbjct: 481 YPNLDHQRSVLFINKKYFLVIDRAIGEATGNLGVHWQLKEDSNPVFDKTKNRVYTTYRDG 540

Query: 565 NNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPAFVFEKPKKNAGTQNFVSIVYPYDGQK 624
           NNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPAFVFEKPKKNAGTQNFVSIVYPYDGQK
Sbjct: 541 NNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPAFVFEKPKKNAGTQNFVSIVYPYDGQK 600

Query: 625 APEISIRENKGNDFEKGKLNLTLTINGKQQLVLVP 659
           APEISIRENKGNDFEKGKLNLTLTINGKQQLV VP
Sbjct: 601 APEISIRENKGNDFEKGKLNLTLTINGKQQLVSVP 635


>5JMD-A nrPDB
          Length = 655

 Score =  570 bits (1469), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/657 (44%), Positives = 405/657 (61%), Gaps = 31/657 (4%)

Query: 19  SGNILAQSSSITRKD-FDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPD 77
           S N+  Q S   + + F  +NL+Y GLEKV      G  +DAAKALL YYR ++  + PD
Sbjct: 3   SENLYFQGSQELKSEVFSLLNLDYPGLEKVKALHQEGKDEDAAKALLDYYRARTNVKTPD 62

Query: 78  FSNAEKPADIRQPIDKVTREMADKALVHQFQPHKGYG-YFDYGKDINWQMWPVKDNEVRW 136
             N +K       I K  ++ AD  L H F  HKGY   ++YG+DINWQ WPVKDNE+RW
Sbjct: 63  I-NLKKIT-----IGKEEQQWADDGLKHTFFVHKGYQPSYNYGEDINWQYWPVKDNELRW 116

Query: 137 QLHRVKWWQAMALVYHATGDEKYAREWVYQYSDWARKNPL--------GLSQD------- 181
           QLHR KW+  M   Y  +GDEKYA+EW YQY DW +KNPL         L  D       
Sbjct: 117 QLHRHKWFTPMGKAYRVSGDEKYAKEWAYQYIDWIKKNPLVKMDKKEYELVSDGKIKGEV 176

Query: 182 -NDKFVWRPLEVSDRVQSLPPTFSLFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGN 240
            N +F WRPLEVS+R+Q     F LF+ SP+FTP FL EFL +YH+ A ++  +Y++QGN
Sbjct: 177 ENVRFAWRPLEVSNRLQDQTTQFQLFLPSPSFTPDFLTEFLVNYHKHAVHILANYSDQGN 236

Query: 241 HRLFEAQRNLFAGVSFPEFKDSPRWRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAID 300
           H LFEAQR ++AG  FPEFK++P WR++GI +LN E+  QVY DG QFEL P YH+AAI+
Sbjct: 237 HLLFEAQRMIYAGAFFPEFKEAPAWRKSGIDILNREVNVQVYNDGGQFELDPHYHLAAIN 296

Query: 301 IFLKAYGSAKRVNLEKEFPQSYVQTVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQ 360
           IF KA G A       EFPQ Y+ T+E MIM   +IS PDY  P F D+ IT+K   +  
Sbjct: 297 IFCKALGIADVNGFRNEFPQEYLDTIEKMIMFYANISFPDYTNPCFSDAKITEKKEMLKN 356

Query: 361 FASWARVFPANQAIKYFATDGKQGKAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPP 420
           + +W+++FP N+ IKY ATDGK+G  P+++SK    +GF+ FR+ W  +AT MV+KA P 
Sbjct: 357 YRAWSKLFPKNETIKYLATDGKEGALPDYMSKGFLKSGFFVFRNSWGMDATQMVVKAGPK 416

Query: 421 GEFHAQPDNGTFELFIKGRNFTPDAGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMV 480
           G +H QPDNGTFE++  G+N  PD+G +VY+G+  +M+ RNW+RQT +H+T+TLDN+N+ 
Sbjct: 417 GFWHCQPDNGTFEMWFNGKNLFPDSGSYVYAGEGEVMEQRNWHRQTSVHNTVTLDNKNLE 476

Query: 481 ITKARQNKWETGNNLDVLTYTNPSYPNLDHQRSVLFINKKYFLVIDRAIGEATGNLGVHW 540
            T++    W+   N+  L   NPSY N  H+RSV F++  YF+++D   G A G++ +H+
Sbjct: 477 TTESVTKLWQPEGNIQTLVTENPSYKNFKHRRSVFFVDNTYFVIVDEVSGSAKGSVNLHY 536

Query: 541 QL--KEDSNPVFDKTKNRVYTTYRDGNNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPA 598
           Q+   E +N   D T     T + DG+N+ +Q    +  S+ +E G  S  Y K  KR  
Sbjct: 537 QMPKGEIANSREDMT---FLTQFEDGSNMKLQCFGPEGMSMKKEPGWCSTAYRKRYKRMN 593

Query: 599 FVFEKPKKNAGTQNFVSIVYPY-DGQKAPEISIRENKGNDFEKGKLNLTLTINGKQQ 654
             F   K N     +++++YP      AP+   +  K   F++  L + + +NGK+Q
Sbjct: 594 VSFNVKKDNENAVRYITVIYPVKKSADAPKFDAK-FKNKTFDENGLEIEVKVNGKKQ 649


>1U3W-A nrPDB
          Length = 374

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 43  GLEKVNKAVAAGNYDDAAKALLAYYREK---SKAREPDFSNAEKPADIRQPIDKVTREMA 99
           GL  V  +V  G     A  ++A    K   +KA+E   +    P D ++PI +V +EM 
Sbjct: 199 GLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMT 258

Query: 100 DKALVHQFQ 108
           D  +   F+
Sbjct: 259 DGGVDFSFE 267


>6D25-A nrPDB
          Length = 520

 Score = 30.8 bits (68), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 250 LFAGVSFPEF-KDSPRWRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGS 308
           L A ++F  F + + R R   I+ +   ++  +  DG +  L+P YHV A+    K Y  
Sbjct: 350 LVASLNFDIFSQHAERVRMANIAQMVNVLQAMILTDGDKMVLTPTYHVFAL---YKPYQD 406

Query: 309 AKRVNLEKEFPQ 320
           A  + L+ + PQ
Sbjct: 407 ATHLPLQLQTPQ 418


>4OJZ-A nrPDB
          Length = 736

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 403 RSGWDKNATVMVLKASPPGEFHAQPDNGTFELFIKGRNFTPDAGVFVYSGDEA------I 456
           R G   N   +V K +  G  H   D   + L+  G     D G   Y   EA      +
Sbjct: 392 RLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDNGNEIVTDYGAARYLNVEAKYGGHYL 451

Query: 457 MKLRNWYRQTRIHSTLTLDNQN 478
            +   W +QT  H+TL ++ Q+
Sbjct: 452 AENNTWAKQTIAHNTLVVNEQS 473


>5YQ5-A nrPDB
          Length = 430

 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 14  VIALSSG-NILAQSSSITRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYR-EKS 71
           ++ LS G N L Q+  I R + +H+ L+ + +EK+N  V   + D      L Y R +++
Sbjct: 280 IVELSVGHNKLKQAFYIPR-NLEHLYLQNNEIEKMNLTVMCPSIDPLHYHHLTYIRVDQN 338

Query: 72  KAREP 76
           K +EP
Sbjct: 339 KLKEP 343


>2IW3-A nrPDB
          Length = 986

 Score = 30.0 bits (66), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 304 KAYGSAKRVNLEKEFPQ-SYVQTVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQFA 362
           KAY      +LE +FP+  Y++ V+    A++ ++  ++  P      ITD NF+ +  +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSS 700

Query: 363 SWARVFP 369
             A + P
Sbjct: 701 RIAVIGP 707


>1UU1-A nrPDB
          Length = 335

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 122 INWQMWPVKDNEVRWQLHRVKWWQAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQD 181
           +N   +P  ++ V     R+    A+ + Y +  +E   +   Y  +D+  KN + +   
Sbjct: 26  LNENPFPFPEDLVDEVFRRLNS-DALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNG 84

Query: 182 NDKFVWRPLEVSDRVQSLPPTFSLF 206
            D+ ++  + + DR    PPT+S +
Sbjct: 85  ADEIIYVMMLMFDRSVFFPPTYSCY 109


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4MMI-A nrPDB                                                         1189   0.0  
5JMD-A nrPDB                                                         1057   0.0  

Sequences not found previously or not previously below threshold:

4OJZ-A nrPDB                                                           37   0.028
6CW5-A nrPDB                                                           34   0.20 
4D7R-A nrPDB                                                           32   1.2  
5GIO-E nrPDB                                                           31   1.4  
3H1I-C nrPDB                                                           31   1.7  
4PFU-A nrPDB                                                           31   1.8  
5L46-A nrPDB                                                           31   1.9  
5LL2-A nrPDB                                                           30   3.3  
4V3G-A nrPDB                                                           30   3.6  
2KJ1-A nrPDB                                                           30   4.2  
4P9S-A nrPDB                                                           30   4.6  
4MCR-A nrPDB                                                           29   5.9  


CONVERGED!
>4MMI-A nrPDB
          Length = 643

 Score = 1189 bits (3077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 633/635 (99%), Positives = 634/635 (99%)

Query: 25  QSSSITRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPDFSNAEKP 84
           QSSS+TRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPDFSNAEKP
Sbjct: 1   QSSSVTRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPDFSNAEKP 60

Query: 85  ADIRQPIDKVTREMADKALVHQFQPHKGYGYFDYGKDINWQMWPVKDNEVRWQLHRVKWW 144
           ADIRQPIDKVTREMADKALVHQFQPHKGYGYFDYGKDINWQMWPVKDNEVRWQLHRVKWW
Sbjct: 61  ADIRQPIDKVTREMADKALVHQFQPHKGYGYFDYGKDINWQMWPVKDNEVRWQLHRVKWW 120

Query: 145 QAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQDNDKFVWRPLEVSDRVQSLPPTFS 204
           QAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQDNDKFVWRPLEVSDRVQSLPPTFS
Sbjct: 121 QAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQDNDKFVWRPLEVSDRVQSLPPTFS 180

Query: 205 LFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGNHRLFEAQRNLFAGVSFPEFKDSPR 264
           LFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGNHRLFEAQRNLFAGVSFPEFKDSPR
Sbjct: 181 LFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGNHRLFEAQRNLFAGVSFPEFKDSPR 240

Query: 265 WRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGSAKRVNLEKEFPQSYVQ 324
           WRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGSAKRVNLEKEFPQSYVQ
Sbjct: 241 WRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGSAKRVNLEKEFPQSYVQ 300

Query: 325 TVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQFASWARVFPANQAIKYFATDGKQG 384
           TVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQFASWARVFPANQAIKYFATDGKQG
Sbjct: 301 TVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQFASWARVFPANQAIKYFATDGKQG 360

Query: 385 KAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPPGEFHAQPDNGTFELFIKGRNFTPD 444
           KAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPPGEFHAQPDNGTFELFIKGRNFTPD
Sbjct: 361 KAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPPGEFHAQPDNGTFELFIKGRNFTPD 420

Query: 445 AGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMVITKARQNKWETGNNLDVLTYTNPS 504
           AGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMVITKARQNKWETGNNLDVLTYTNPS
Sbjct: 421 AGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMVITKARQNKWETGNNLDVLTYTNPS 480

Query: 505 YPNLDHQRSVLFINKKYFLVIDRAIGEATGNLGVHWQLKEDSNPVFDKTKNRVYTTYRDG 564
           YPNLDHQRSVLFINKKYFLVIDRAIGEATGNLGVHWQLKEDSNPVFDKTKNRVYTTYRDG
Sbjct: 481 YPNLDHQRSVLFINKKYFLVIDRAIGEATGNLGVHWQLKEDSNPVFDKTKNRVYTTYRDG 540

Query: 565 NNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPAFVFEKPKKNAGTQNFVSIVYPYDGQK 624
           NNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPAFVFEKPKKNAGTQNFVSIVYPYDGQK
Sbjct: 541 NNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPAFVFEKPKKNAGTQNFVSIVYPYDGQK 600

Query: 625 APEISIRENKGNDFEKGKLNLTLTINGKQQLVLVP 659
           APEISIRENKGNDFEKGKLNLTLTINGKQQLV VP
Sbjct: 601 APEISIRENKGNDFEKGKLNLTLTINGKQQLVSVP 635


>5JMD-A nrPDB
          Length = 655

 Score = 1057 bits (2733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/657 (44%), Positives = 405/657 (61%), Gaps = 31/657 (4%)

Query: 19  SGNILAQSSSITRKD-FDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPD 77
           S N+  Q S   + + F  +NL+Y GLEKV      G  +DAAKALL YYR ++  + PD
Sbjct: 3   SENLYFQGSQELKSEVFSLLNLDYPGLEKVKALHQEGKDEDAAKALLDYYRARTNVKTPD 62

Query: 78  FSNAEKPADIRQPIDKVTREMADKALVHQFQPHKGYG-YFDYGKDINWQMWPVKDNEVRW 136
             N +K       I K  ++ AD  L H F  HKGY   ++YG+DINWQ WPVKDNE+RW
Sbjct: 63  I-NLKKIT-----IGKEEQQWADDGLKHTFFVHKGYQPSYNYGEDINWQYWPVKDNELRW 116

Query: 137 QLHRVKWWQAMALVYHATGDEKYAREWVYQYSDWARKNPL--------GLSQD------- 181
           QLHR KW+  M   Y  +GDEKYA+EW YQY DW +KNPL         L  D       
Sbjct: 117 QLHRHKWFTPMGKAYRVSGDEKYAKEWAYQYIDWIKKNPLVKMDKKEYELVSDGKIKGEV 176

Query: 182 -NDKFVWRPLEVSDRVQSLPPTFSLFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGN 240
            N +F WRPLEVS+R+Q     F LF+ SP+FTP FL EFL +YH+ A ++  +Y++QGN
Sbjct: 177 ENVRFAWRPLEVSNRLQDQTTQFQLFLPSPSFTPDFLTEFLVNYHKHAVHILANYSDQGN 236

Query: 241 HRLFEAQRNLFAGVSFPEFKDSPRWRQTGISVLNTEIKKQVYADGMQFELSPIYHVAAID 300
           H LFEAQR ++AG  FPEFK++P WR++GI +LN E+  QVY DG QFEL P YH+AAI+
Sbjct: 237 HLLFEAQRMIYAGAFFPEFKEAPAWRKSGIDILNREVNVQVYNDGGQFELDPHYHLAAIN 296

Query: 301 IFLKAYGSAKRVNLEKEFPQSYVQTVENMIMALISISLPDYNTPMFGDSWITDKNFRMAQ 360
           IF KA G A       EFPQ Y+ T+E MIM   +IS PDY  P F D+ IT+K   +  
Sbjct: 297 IFCKALGIADVNGFRNEFPQEYLDTIEKMIMFYANISFPDYTNPCFSDAKITEKKEMLKN 356

Query: 361 FASWARVFPANQAIKYFATDGKQGKAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPP 420
           + +W+++FP N+ IKY ATDGK+G  P+++SK    +GF+ FR+ W  +AT MV+KA P 
Sbjct: 357 YRAWSKLFPKNETIKYLATDGKEGALPDYMSKGFLKSGFFVFRNSWGMDATQMVVKAGPK 416

Query: 421 GEFHAQPDNGTFELFIKGRNFTPDAGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMV 480
           G +H QPDNGTFE++  G+N  PD+G +VY+G+  +M+ RNW+RQT +H+T+TLDN+N+ 
Sbjct: 417 GFWHCQPDNGTFEMWFNGKNLFPDSGSYVYAGEGEVMEQRNWHRQTSVHNTVTLDNKNLE 476

Query: 481 ITKARQNKWETGNNLDVLTYTNPSYPNLDHQRSVLFINKKYFLVIDRAIGEATGNLGVHW 540
            T++    W+   N+  L   NPSY N  H+RSV F++  YF+++D   G A G++ +H+
Sbjct: 477 TTESVTKLWQPEGNIQTLVTENPSYKNFKHRRSVFFVDNTYFVIVDEVSGSAKGSVNLHY 536

Query: 541 QL--KEDSNPVFDKTKNRVYTTYRDGNNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPA 598
           Q+   E +N   D T     T + DG+N+ +Q    +  S+ +E G  S  Y K  KR  
Sbjct: 537 QMPKGEIANSREDMT---FLTQFEDGSNMKLQCFGPEGMSMKKEPGWCSTAYRKRYKRMN 593

Query: 599 FVFEKPKKNAGTQNFVSIVYPY-DGQKAPEISIRENKGNDFEKGKLNLTLTINGKQQ 654
             F   K N     +++++YP      AP+   +  K   F++  L + + +NGK+Q
Sbjct: 594 VSFNVKKDNENAVRYITVIYPVKKSADAPKFDAK-FKNKTFDENGLEIEVKVNGKKQ 649


>4OJZ-A nrPDB
          Length = 736

 Score = 37.0 bits (84), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 19/107 (17%)

Query: 378 ATDGKQGKAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPPGEFHAQPDNGTFELFIK 437
             DG QG                  R G   N   +V K +  G  H   D   + L+  
Sbjct: 380 GADGDQGALS-------------IHRLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDN 426

Query: 438 GRNFTPDAGVFVYSGDEA------IMKLRNWYRQTRIHSTLTLDNQN 478
           G     D G   Y   EA      + +   W +QT  H+TL ++ Q+
Sbjct: 427 GNEIVTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHNTLVVNEQS 473


>6CW5-A nrPDB
          Length = 332

 Score = 33.9 bits (76), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 197 QSLPPTFSLFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGNHRL 243
           QS PP  S+F  SP  TPA L EF     +   +L  +  E G+  L
Sbjct: 161 QSSPPLTSVFNPSPMLTPAQLREFP---WKHLSWLIVNEGELGDLLL 204


>4D7R-A nrPDB
          Length = 400

 Score = 31.6 bits (70), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 20 GNILAQSSSITRKDFDHINLEYS--GLEKVNKAVAAGNYDDAAKALLAYYREKSK 72
           N+  Q  S+ + +   +  +    G+ ++ K     N D  A+    +Y EKS 
Sbjct: 23 ENLYFQGDSLLKNEVIKLFNDKPKSGIARIKKWCTDNNQDFIAETAKIFYEEKSN 77


>5GIO-E nrPDB
          Length = 232

 Score = 31.2 bits (69), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 318 FPQSYVQTVENMIMALISISLPDYNTPMFGDSWITDKNFRMA 359
           FPQSY   VEN+ +  + I+ PD       D  I +  F + 
Sbjct: 136 FPQSYKSVVENVDVLYVDIAQPDQT-----DIAIYNAKFFLK 172


>3H1I-C nrPDB
          Length = 380

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 174 NPLGLSQDNDKFVWRPLEVSDRVQSLPPTFSLFVNSPAFTPAFL 217
           NPLG+S D+DK  + P      +  L    + F+    F+P  L
Sbjct: 208 NPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLL 251


>4PFU-A nrPDB
          Length = 547

 Score = 30.8 bits (68), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 56  YDDAAKALLAYYREKSKAREPDFSNAEKPADIRQPIDKVTR------EMADKALVHQFQP 109
           Y DA ++  +Y     + + P+  +  +  + R P+D V +      ++ +  L      
Sbjct: 432 YPDALESEFSYTGNYGRYQNPEVESLLEELN-RTPLDNVEKVTELCGKLGEILLKDLPFI 490

Query: 110 HKGYGYFDY-GKDINWQMWPVKDNEVRWQLHRVKWWQAMAL 149
              YG   +  +D  W  WP + N   W      WWQ  AL
Sbjct: 491 PLWYGAMAFITQDNVWTNWPNEHNPYAWPCGWANWWQTGAL 531


>5L46-A nrPDB
          Length = 841

 Score = 30.8 bits (68), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 70  KSKAREP-DFSNAEKPADIRQPIDKVTREMADKALVHQFQPHKGYGYFDYGKDINWQMWP 128
           ++KARE   F+N        +   + T+ ++   L  + +     G+    +  +W   P
Sbjct: 415 EAKARESYGFNNIVGYPKEERFAGRPTQRVS--GLYQRLESKCSMGFHAGWEQPHWFYKP 472

Query: 129 VKDNEVRWQLHRVKWWQAMALVYH 152
            +D + R    R  W++ +   Y 
Sbjct: 473 GQDTQYRPSFRRTNWFEPVGSEYK 496


>5LL2-A nrPDB
          Length = 480

 Score = 30.1 bits (66), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 20 GNILAQSSSITRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYY 67
           N+  Q    +  +F+ +      L+K +K +   N   A  A + YY
Sbjct: 14 ENLYFQGHMASGSEFELMG----KLDKASKLIDEENKYYARSARINYY 57


>4V3G-A nrPDB
          Length = 339

 Score = 30.1 bits (66), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 70  KSKAREPDFSNAEKPADIRQPIDKVTREMADKALVHQFQPHKGY--GYFDYGKDINWQMW 127
           +SK   PD S   K                     H  +P+  Y    ++ G   N +  
Sbjct: 133 RSKVYSPDVSGLRK-----------------NLAEHSIRPYLTYWNNDYNMGFYSNLEYL 175

Query: 128 PVKDNEVRWQLHRVKWWQAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQDNDKFVW 187
             K++   W   + + + A+   Y   G+ +   E+ YQ      K P G   +   F  
Sbjct: 176 LSKEDRNAWGKRQEQGYSALFKPYKRFGNWEVGVEFYYQIKTNDEKQPDGTINEKSDFNE 235

Query: 188 RPLE 191
           R +E
Sbjct: 236 RYIE 239


>2KJ1-A nrPDB
          Length = 89

 Score = 29.7 bits (65), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 558 YTTYRDGNNLMIQSLNADRTSLNEEEGKVSYVYNKELKRPAFVFEKPKKN 607
               + G N+ I+    ++ ++N E   + + Y KE++    + E    N
Sbjct: 3   LNQIKRGVNMKIRIKGPNKETINREVSILRHSYQKEIQAKETMKEVLSDN 52


>4P9S-A nrPDB
          Length = 848

 Score = 29.7 bits (65), Expect = 4.6,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 120 KDINWQMWPVKDNEVRWQLHRVKWWQAMALVYH 152
           +  +W   P +D + R    R  W++ +   Y 
Sbjct: 465 EQPHWFYKPGQDTQYRPSFRRTNWFEPVGSEYK 497


>4MCR-A nrPDB
          Length = 757

 Score = 29.3 bits (64), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 21/114 (18%)

Query: 422 EFHAQPDNGTFELFIKGR--------NFTPDAGVFVYSGDEAIMKLRNW-YRQTRIHSTL 472
           E+H    +G+  L+ +GR        N TP   +  +  +     ++ + Y  T+I   L
Sbjct: 32  EWHEGSGSGSENLYFQGRSKSSNEATNITPKHNMKAFLDELKAENIKKFLYNFTQIPH-L 90

Query: 473 TLDNQNMVITKARQNKWETGN-------NLDVLTYTNPSYPNLDHQRSVLFINK 519
               QN  + K  Q++W+          + DVL     SYPN  H   +  IN+
Sbjct: 91  AGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLL----SYPNKTHPNYISIINE 140


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.308    0.131    0.389 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,012,579
Number of Sequences: 36641
Number of extensions: 1171784
Number of successful extensions: 2895
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2862
Number of HSP's gapped (non-prelim): 33
length of query: 659
length of database: 10,336,785
effective HSP length: 103
effective length of query: 556
effective length of database: 6,562,762
effective search space: 3648895672
effective search space used: 3648895672
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 62 (28.5 bits)