BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q41931
(320 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5GJA-A nrPDB 632 0.0
1W9Y-A nrPDB 484 e-137
5O9W-A nrPDB 152 2e-37
1GP4-A nrPDB 143 8e-35
4XAE-A nrPDB 134 5e-32
6JYV-A nrPDB 113 1e-25
5C3R-A nrPDB 65 5e-11
3ON7-A nrPDB 58 7e-09
2VAU-A nrPDB 49 4e-06
5LSQ-A nrPDB 42 3e-04
5HDM-A nrPDB 33 0.12
6ED1-A nrPDB 31 0.68
1W2A-X nrPDB 29 2.9
3RST-A nrPDB 29 3.4
4KWB-A nrPDB 28 3.7
3VIB-A nrPDB 28 7.6
2WW2-A nrPDB 28 7.7
6FFL-A nrPDB 27 9.2
3H93-A nrPDB 27 9.6
3CTZ-A nrPDB 27 9.6
>5GJA-A nrPDB
Length = 303
Score = 632 bits (1630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MEKNMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHY 60
MEKNMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHY
Sbjct: 1 MEKNMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHY 60
Query: 61 KTCQEQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEYRTAMKDF 120
KTCQEQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEYRTAMKDF
Sbjct: 61 KTCQEQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEYRTAMKDF 120
Query: 121 GKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAH 180
GKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAH
Sbjct: 121 GKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAH 180
Query: 181 TDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVV 240
TDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVV
Sbjct: 181 TDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVV 240
Query: 241 TQQEGNRMSVASFYNPGSDAEISPATSLVEKDSEYPSFVFDDYMKLYAGVKFQPKEPRFA 300
TQQEGNRMSVASFYNPGSDAEISPATSLVEKDSEYPSFVFDDYMKLYAGVKFQPKEPRFA
Sbjct: 241 TQQEGNRMSVASFYNPGSDAEISPATSLVEKDSEYPSFVFDDYMKLYAGVKFQPKEPRFA 300
Query: 301 AMK 303
AMK
Sbjct: 301 AMK 303
>1W9Y-A nrPDB
Length = 319
Score = 484 bits (1245), Expect = e-137, Method: Compositional matrix adjust.
Identities = 218/316 (68%), Positives = 265/316 (83%), Gaps = 5/316 (1%)
Query: 7 FPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYKTCQEQ 66
FP++ L K+NG ER TM +I +ACENWGFFE+VNHG+P ++MD +EKMTK HYK C EQ
Sbjct: 4 FPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQ 63
Query: 67 KFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEYRTAMKDFGKRLEN 126
+F +++ SK L+ ++ EV D+DWESTF+++HLP SN++++ D+ +EYR M+DF KRLE
Sbjct: 64 RFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEK 123
Query: 127 LAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAHTDAGGI 186
LAE+LLDLLCENLGLEKGYLK F+G+KGP FGTKVSNYPPCPKP++IKGLRAHTDAGGI
Sbjct: 124 LAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGI 183
Query: 187 ILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVVTQQEGN 246
ILLFQDDKVSGLQLLKDG WIDVPP+ HSIV+NLGDQLEVITNGKYKSV+HRV+ Q++G
Sbjct: 184 ILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGA 243
Query: 247 RMSVASFYNPGSDAEISPATSLVEKDSE-----YPSFVFDDYMKLYAGVKFQPKEPRFAA 301
RMS+ASFYNPGSDA I PA +LVEK++E YP FVFDDYMKLYAG+KFQ KEPRF A
Sbjct: 244 RMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEA 303
Query: 302 MKNASAVTELNPTAAV 317
MK +++P A V
Sbjct: 304 MKAMETDVKMDPIATV 319
>5O9W-A nrPDB
Length = 367
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 153/278 (55%), Gaps = 12/278 (4%)
Query: 7 FPVVDLSKLNGEE---RDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHY--- 60
PV+D+ L E + ++ AC+ WGFF++VNHG+ L+D ++ + +
Sbjct: 58 IPVIDIENLLSPEPIIGKLELDRLHFACKEWGFFQVVNHGVDASLVDSVKSEIQGFFNLS 117
Query: 61 ---KTCQEQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQ--SNLNDISDVSDEYRT 115
KT EQ+ D ++ G +E+E + +DW F + LP + S + R
Sbjct: 118 MDEKTKYEQEDGD-VEGFGQGFIESEDQTLDWADIFMMFTLPLHLRKPHLFSKLPVPLRE 176
Query: 116 AMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIK 175
++ + ++ L+ L + + + L ++ +K + T +++ YPPCP+P +
Sbjct: 177 TIESYSSEMKKLSMVLFNKMEKALQVQAAEIKGMSEVFIDGTQAMRMNYYPPCPQPNLAI 236
Query: 176 GLRAHTDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSV 235
GL +H+D GG+ +L Q ++V GLQ+ ++G WI V PL ++ V+N+GD LE++TNG Y SV
Sbjct: 237 GLTSHSDFGGLTILLQINEVEGLQIKREGTWISVKPLPNAFVVNVGDILEIMTNGIYHSV 296
Query: 236 LHRVVTQQEGNRMSVASFYNPGSDAEISPATSLVEKDS 273
HR V R+S+A+F++P ++ I P +SL+ ++
Sbjct: 297 DHRAVVNSTNERLSIATFHDPSLESVIGPISSLITPET 334
>1GP4-A nrPDB
Length = 356
Score = 143 bits (361), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 148/295 (50%), Gaps = 16/295 (5%)
Query: 6 KFPVVDLSKLNGEE---RDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYKT 62
+ P +DL + ++ R+ + + +A +WG ++NHG+P DLM++++K ++ +
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 63 CQEQK---FNDMLKSK----GLDNLETEVEDVDWESTFYVRHLPQS--NLNDISDVSDEY 113
E+K ND K G ++WE F+ P+ +L+ +Y
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 114 RTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEM 173
A ++ K L LA + L LGLE L+K G + K++ YP CP+PE+
Sbjct: 166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPEL 225
Query: 174 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYK 233
G+ AHTD + + + V GLQL +G W+ + SIV+++GD LE+++NGKYK
Sbjct: 226 ALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 284
Query: 234 SVLHRVVTQQEGNRMSVASFYNPGSDAEI---SPATSLVEKDSEYPSFVFDDYMK 285
S+LHR + +E R+S A F P D + P VE +++P F +++
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>4XAE-A nrPDB
Length = 373
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 149/303 (49%), Gaps = 31/303 (10%)
Query: 2 EKNMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYK 61
E + PV+D+S + D+ + +A E WGFF+++NHG+P +++D ++ T +
Sbjct: 69 ETDEAIPVIDMSN---PDEDRVAEAVCDAAEKWGFFQVINHGVPLEVLDDVKAATHKFFN 125
Query: 62 TCQEQKFNDMLKSKGLDNL-----------ETEVEDVDWESTFYVRHLPQSNLNDISDVS 110
E+K K L E +E D+ S F+V
Sbjct: 126 LPVEEK-RKFTKENSLSTTVRFGTSFSPLAEQALEWKDYLSLFFVSEAEAEQF-----WP 179
Query: 111 DEYRTAMKDFGKRLENLAEDLLDLLCENLGLEK--GYLKKVFHGTKGPTFGTKVSNYPPC 168
D R ++ + + + LL+ L +NL +++ + +F G+ ++ YP C
Sbjct: 180 DICRNETLEYINKSKKMVRRLLEYLGKNLNVKELDETKESLFMGS----IRVNLNYYPIC 235
Query: 169 PKPEMIKGLRAHTDAGGIILLFQDDKVSGLQL--LKDGDWIDVPPLNHSIVINLGDQLEV 226
P P++ G+ H+D + +L QD ++ GL + L G+W+ VPP+ S VIN+GD +++
Sbjct: 236 PNPDLTVGVGRHSDVSSLTILLQD-QIGGLHVRSLASGNWVHVPPVAGSFVINIGDAMQI 294
Query: 227 ITNGKYKSVLHRVVTQQEGNRMSVASFYNPGSDAEISPATSLVEKDSE--YPSFVFDDYM 284
++NG YKSV HRV+ NR+SV F NP ++ I P ++ E Y ++ DY+
Sbjct: 295 MSNGLYKSVEHRVLANGYNNRISVPIFVNPKPESVIGPLPEVIANGEEPIYRDVLYSDYV 354
Query: 285 KLY 287
K +
Sbjct: 355 KYF 357
>6JYV-A nrPDB
Length = 339
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 129/291 (44%), Gaps = 30/291 (10%)
Query: 6 KFPVVDLSKLNGEE---RDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYKT 62
P++D++ L G + R I+ AC GFF +V HG+ L++++E++ + +
Sbjct: 10 SLPIIDIAALAGSDPAARRSVAVRIDRACREQGFFYVVGHGVEAQLVERLERLARQFFAL 69
Query: 63 CQEQKFNDMLK-----SKGLDNLETEVED--VDWESTFYV------------RHLPQSNL 103
+ K ++ +G L E+ DW+ Y+ P
Sbjct: 70 DETSKLRWRMELGGRAWRGYFPLGGELTSNRPDWKEGLYLGSELDAEHPEVRAGTPLHGA 129
Query: 104 NDISDVSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVS 163
N +V R + ++ + L++ + LGLE Y + G P ++
Sbjct: 130 NLFPEVPG-LRETLLEYLDATTRVGHRLMEGIALGLGLEADYFAARYTGD--PLILFRLF 186
Query: 164 NYPPCPKPEMIK---GLRAHTDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINL 220
NYP P PE + G+ HTD G + LL QD + GLQ+ W++ PP+ S V NL
Sbjct: 187 NYPSQPVPEGLDVQWGVGEHTDYGLLTLLHQD-AIGGLQVRTPQGWLEAPPIPGSFVCNL 245
Query: 221 GDQLEVITNGKYKSVLHRVVTQQEG-NRMSVASFYNPGSDAEISPATSLVE 270
GD LE +T G Y+S HRV G +R+S F++P A + P L E
Sbjct: 246 GDMLERMTGGLYRSTPHRVARNTSGRDRLSFPLFFDPNFHARVQPIEGLPE 296
>5C3R-A nrPDB
Length = 343
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 139/314 (44%), Gaps = 45/314 (14%)
Query: 2 EKNMKFPVVDLSK-LNGEE--RDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKD 58
E + P++D SK L G+E + +T I + GF + N + D + + +
Sbjct: 10 EDGLVIPLIDFSKFLEGDETLKLETAKAILHGFQTAGFIYLKNIPIQPDFREHVFNTSAK 69
Query: 59 HYKTCQEQKF---------NDMLKSKGLDNLE-----TEVEDV-----DWESTFYV-RHL 98
+K +E+K N + G + + E+E + D + ++ + R
Sbjct: 70 FFKLPKEKKLEVGWTTPEANRGYSAPGREKVTQLTDPAEIEKIRSAAPDIKESYEIGRED 129
Query: 99 PQSNLNDISDVSDE---YRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKG 155
+ N D+ +++ M +F + + L +++ + +G++ Y
Sbjct: 130 EPGHPNPWPAEQDDLVGFKSTMNNFFDQCKALHIEVMRAIAVGMGIDANYFDSFVDVGDN 189
Query: 156 PTFGTKVSNYPPCPKPEMIK----GLRA--HTDAGGIILLFQDDKVSGLQLLK-DGDWID 208
++ +YP K E+ K +RA HTD G I LLFQD + GLQ+ +G +ID
Sbjct: 190 IL---RLLHYPAV-KSEVFKINPGQVRAGEHTDYGSITLLFQDSR-GGLQVKSPNGQFID 244
Query: 209 VPPLNHSIVINLGDQLEVITNGKYKSVLHRVV--TQQEG---NRMSVASFYNPG--SDAE 261
P+ +++V+N GD L +N KS +HRVV +QE R S+A F NP S E
Sbjct: 245 ATPIENTVVVNAGDLLARWSNDTIKSTVHRVVEPPKQEDVHPPRYSIAYFCNPNHKSYIE 304
Query: 262 ISPATSLVEKDSEY 275
P T E + +Y
Sbjct: 305 AIPGTYAAESERKY 318
>3ON7-A nrPDB
Length = 280
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 161 KVSNYPPCPKPEMIKGLRA--HTDAGGIILLFQDDKVSGLQL-LKDGDWIDVPPLNHSIV 217
++ +YPP E + +RA H D I +L ++ GLQ+ KDG W+DVP +I+
Sbjct: 153 RILHYPPMTGDEEMGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNII 211
Query: 218 INLGDQLEVITNGKYKSVLHRVV----TQQEGNRMSVASFYNPGSDAEIS 263
IN+GD L+ ++G + S HRV+ T + +R+S+ F +P +S
Sbjct: 212 INIGDMLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>2VAU-A nrPDB
Length = 331
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 125/294 (42%), Gaps = 44/294 (14%)
Query: 8 PVVDLSKLNGEERDQTMAL---INEACENWGFFEIVNHGLPHDLMDKIEKMTKD-HYKTC 63
P +D+S L G+++ M + I+ A + GFF VNHG+ + ++ + TK+ H
Sbjct: 10 PKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHMSIT 66
Query: 64 QEQKFNDMLKSKGLDNLET-------------EVEDVDWESTFYVRHLPQ----SNLNDI 106
E+K++ +++ ++ + VE + + + P+ + +++
Sbjct: 67 PEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEV 126
Query: 107 SDVSDEYR-TAMKDFGKR----LENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTK 161
+ DE + +DF ++ + L+ LL LG E+ + + H T +
Sbjct: 127 NVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFAR--HFKPDDTLASV 184
Query: 162 V-SNYPPC-PKPEMIKGLRA---------HTDAGGIILLFQDDKVSGLQLLKDGDWIDVP 210
V YP P PE A H D I +L+Q + V LQ+ + D+
Sbjct: 185 VLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIE 243
Query: 211 PLNHSIVINLGDQLEVITNGKYKSVLHRVVTQQEGNRMSVASFYNPGSDAEISP 264
+ +IN G + +TN YK+ +HR V R S+ F N G D+ I P
Sbjct: 244 ADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDP 296
>5LSQ-A nrPDB
Length = 359
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 110 SDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCP 169
++ Y+ +MK F + L E LL L L + T+ +V +PP
Sbjct: 132 NNTYQKSMKTFMEELGLAGERLLKLTALGFELPINTFTDL---TRDGWHHMRVLRFPP-Q 187
Query: 170 KPEMIKGLRAHTDAGGIILLFQDDKVSGLQLL-----------------------KDGDW 206
+ +G+ AHTD G +++ QDD V GL + D W
Sbjct: 188 TSTLSRGIGAHTDYGLLVIAAQDD-VGGLYIRPPVEGEKRNRNWLPGESSAGMFEHDEPW 246
Query: 207 IDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVVTQQEGNRMSVASFYNPGSDAEISP 264
V P + GD L+ +T G+ S H+V R + A F+ P +A P
Sbjct: 247 TFVTPTPGVWTVFPGDILQFMTGGQLLSTPHKVKLNTR-ERFACAYFHEPNFEASAYP 303
>5HDM-A nrPDB
Length = 434
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 163 SNYPPCPKPEMIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--DWIDVPPLNHSIVINL 220
S + P P PE I GLR T G++L+F D+ ++G +L G ++ + P ++ +
Sbjct: 219 SGFIP-PTPEFINGLRQLTKDNGVLLIF-DEVMTGFRLAYGGAQEYFGITPDLTTLGKII 276
Query: 221 GDQLEVITNGKYKSVLHRVV 240
G L V G + ++ V
Sbjct: 277 GGGLPVGAYGGRRDIMEMVA 296
>6ED1-A nrPDB
Length = 879
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 85 EDVDWESTFYVRHLPQSNLNDISD--VSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLE 142
E V+ E+ F V + NL D +SD + MK RL + ++ LLD LC NLG E
Sbjct: 650 EVVNGEAVFAVPFINGENLLDARSGALSDRLKIQMKLLSSRLTD-SDVLLDGLCINLGQE 708
Query: 143 KGYL 146
Y
Sbjct: 709 HCYF 712
>1W2A-X nrPDB
Length = 331
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 180 HTDAGGIILLFQDDKVSG---LQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVL 236
H D + L+ Q +G LQ G + D+P ++++ G ++T G+ K+
Sbjct: 203 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 262
Query: 237 HRVVTQQE-----GNRMSVASFYNPGSDAEIS 263
H V + +R S F P +D S
Sbjct: 263 HHVAAPRRDQIAGSSRTSSVFFLRPNADFTFS 294
>3RST-A nrPDB
Length = 240
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 37 FEIVNHGLPHDLMDKIEKMTKDHYKTCQE------QKFNDMLKSKGLDNLETEVEDVDWE 90
FE + G D+M +MTK+ Q + F D++ SKG + EV+ +
Sbjct: 135 FETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVI-SKGRGMPKAEVKKIADG 193
Query: 91 STFYVRHLPQSNLNDISDVSDEYRTAMKDFGKRLENLA 128
+ R + NL D D+ TAMK K L+N +
Sbjct: 194 RVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNAS 231
>4KWB-A nrPDB
Length = 273
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 37 FEIVNHGLPHDLMDKIEKMTKDHYKTCQE------QKFNDMLKSKGLDNLETEVEDVDWE 90
FE + G D+M +MTK+ Q + F D++ SKG + EV+ +
Sbjct: 140 FETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVI-SKGRGMPKAEVKKIADG 198
Query: 91 STFYVRHLPQSNLNDISDVSDEYRTAMKDFGKRLENLA 128
+ R + NL D D+ TAMK K L+N +
Sbjct: 199 RVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNAS 236
>3VIB-A nrPDB
Length = 210
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 92 TFYVRHLPQSNLNDISDVSDEYRTAMKDFGKRLENLAEDLLDLLCENL 139
TFY + + +++LN+I+ + R A+ K E+L + L +C+++
Sbjct: 22 TFYRKGIARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALFQRICDDI 69
>2WW2-A nrPDB
Length = 737
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 211 PLNHSIVINLGDQLEVITNGKYKSVLHRVVTQQEGNRMSVASFYNPGSDAEISPATSLVE 270
P N+S+ N G L+ + + + V ++ ++ V YN GS I P LV+
Sbjct: 109 PYNYSVTFNNG--LQTSLSATSRGAVFEVSFPEKEDQYVVVDAYNGGSSITIEPEKRLVK 166
Query: 271 KDSEY 275
+ Y
Sbjct: 167 GATRY 171
>6FFL-A nrPDB
Length = 388
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 198 LQLLKDGDWIDVPPLNHSIVINLGDQLEVITNG 230
L LL + +I PP N +I LG ++ V TNG
Sbjct: 116 LMLLYNKKFITTPPKNSQELIELGKKMTVDTNG 148
>3H93-A nrPDB
Length = 192
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 36 FFEIVNHGLPHDLMDKI-EKMTKDHYKTCQEQKFNDMLKSKGLDN 79
F + + G+ HD+ + + E + K+H K ++ D L KG+D
Sbjct: 78 FLTLESMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDK 122
>3CTZ-A nrPDB
Length = 623
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 198 LQLLKDGDWIDVPPLNHSIVINLGDQLEV-ITNGKYKSVL 236
+ L DGD ID P + ++++LG + E I YKS+L
Sbjct: 233 IMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSIL 272
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5GJA-A nrPDB 438 e-123
1W9Y-A nrPDB 436 e-123
1GP4-A nrPDB 324 5e-89
5O9W-A nrPDB 321 2e-88
4XAE-A nrPDB 306 9e-84
6JYV-A nrPDB 300 7e-82
2VAU-A nrPDB 251 3e-67
5C3R-A nrPDB 248 3e-66
5LSQ-A nrPDB 184 4e-47
3ON7-A nrPDB 158 4e-39
Sequences not found previously or not previously below threshold:
1W2A-X nrPDB 74 6e-14
3J0A-A nrPDB 31 0.91
4KVK-A nrPDB 30 1.9
>5GJA-A nrPDB
Length = 303
Score = 438 bits (1127), Expect = e-123, Method: Composition-based stats.
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MEKNMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHY 60
MEKNMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHY
Sbjct: 1 MEKNMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHY 60
Query: 61 KTCQEQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEYRTAMKDF 120
KTCQEQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEYRTAMKDF
Sbjct: 61 KTCQEQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEYRTAMKDF 120
Query: 121 GKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAH 180
GKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAH
Sbjct: 121 GKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAH 180
Query: 181 TDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVV 240
TDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVV
Sbjct: 181 TDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVV 240
Query: 241 TQQEGNRMSVASFYNPGSDAEISPATSLVEKDSEYPSFVFDDYMKLYAGVKFQPKEPRFA 300
TQQEGNRMSVASFYNPGSDAEISPATSLVEKDSEYPSFVFDDYMKLYAGVKFQPKEPRFA
Sbjct: 241 TQQEGNRMSVASFYNPGSDAEISPATSLVEKDSEYPSFVFDDYMKLYAGVKFQPKEPRFA 300
Query: 301 AMK 303
AMK
Sbjct: 301 AMK 303
>1W9Y-A nrPDB
Length = 319
Score = 436 bits (1122), Expect = e-123, Method: Composition-based stats.
Identities = 218/318 (68%), Positives = 265/318 (83%), Gaps = 5/318 (1%)
Query: 5 MKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYKTCQ 64
FP++ L K+NG ER TM +I +ACENWGFFE+VNHG+P ++MD +EKMTK HYK C
Sbjct: 2 ENFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCM 61
Query: 65 EQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEYRTAMKDFGKRL 124
EQ+F +++ SK L+ ++ EV D+DWESTF+++HLP SN++++ D+ +EYR M+DF KRL
Sbjct: 62 EQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRL 121
Query: 125 ENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAHTDAG 184
E LAE+LLDLLCENLGLEKGYLK F+G+KGP FGTKVSNYPPCPKP++IKGLRAHTDAG
Sbjct: 122 EKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAG 181
Query: 185 GIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGKYKSVLHRVVTQQE 244
GIILLFQDDKVSGLQLLKDG WIDVPP+ HSIV+NLGDQLEVITNGKYKSV+HRV+ Q++
Sbjct: 182 GIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKD 241
Query: 245 GNRMSVASFYNPGSDAEISPATSLVEKDSE-----YPSFVFDDYMKLYAGVKFQPKEPRF 299
G RMS+ASFYNPGSDA I PA +LVEK++E YP FVFDDYMKLYAG+KFQ KEPRF
Sbjct: 242 GARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRF 301
Query: 300 AAMKNASAVTELNPTAAV 317
AMK +++P A V
Sbjct: 302 EAMKAMETDVKMDPIATV 319
>1GP4-A nrPDB
Length = 356
Score = 324 bits (829), Expect = 5e-89, Method: Composition-based stats.
Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 16/299 (5%)
Query: 2 EKNMKFPVVDLSKLNGEE---RDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKD 58
E + P +DL + ++ R+ + + +A +WG ++NHG+P DLM++++K ++
Sbjct: 42 EDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEE 101
Query: 59 HYKTCQEQKFNDM-------LKSKGLDNLETEVEDVDWESTFYVRHLPQS--NLNDISDV 109
+ E+K ++ G ++WE F+ P+ +L+
Sbjct: 102 FFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT 161
Query: 110 SDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCP 169
+Y A ++ K L LA + L LGLE L+K G + K++ YP CP
Sbjct: 162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCP 221
Query: 170 KPEMIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITN 229
+PE+ G+ AHTD + + + V GLQL +G W+ + SIV+++GD LE+++N
Sbjct: 222 QPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSN 280
Query: 230 GKYKSVLHRVVTQQEGNRMSVASFYNPGSDAEI---SPATSLVEKDSEYPSFVFDDYMK 285
GKYKS+LHR + +E R+S A F P D + P VE +++P F +++
Sbjct: 281 GKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>5O9W-A nrPDB
Length = 367
Score = 321 bits (823), Expect = 2e-88, Method: Composition-based stats.
Identities = 81/283 (28%), Positives = 152/283 (53%), Gaps = 10/283 (3%)
Query: 1 MEKNMKFPVVDLSKLNGEE---RDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTK 57
+ + PV+D+ L E + ++ AC+ WGFF++VNHG+ L+D ++ +
Sbjct: 52 INDHETIPVIDIENLLSPEPIIGKLELDRLHFACKEWGFFQVVNHGVDASLVDSVKSEIQ 111
Query: 58 DHYKTCQEQKFNDM-----LKSKGLDNLETEVEDVDWESTFYVRHLPQS--NLNDISDVS 110
+ ++K ++ G +E+E + +DW F + LP + S +
Sbjct: 112 GFFNLSMDEKTKYEQEDGDVEGFGQGFIESEDQTLDWADIFMMFTLPLHLRKPHLFSKLP 171
Query: 111 DEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPK 170
R ++ + ++ L+ L + + + L ++ +K + T +++ YPPCP+
Sbjct: 172 VPLRETIESYSSEMKKLSMVLFNKMEKALQVQAAEIKGMSEVFIDGTQAMRMNYYPPCPQ 231
Query: 171 PEMIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNG 230
P + GL +H+D GG+ +L Q ++V GLQ+ ++G WI V PL ++ V+N+GD LE++TNG
Sbjct: 232 PNLAIGLTSHSDFGGLTILLQINEVEGLQIKREGTWISVKPLPNAFVVNVGDILEIMTNG 291
Query: 231 KYKSVLHRVVTQQEGNRMSVASFYNPGSDAEISPATSLVEKDS 273
Y SV HR V R+S+A+F++P ++ I P +SL+ ++
Sbjct: 292 IYHSVDHRAVVNSTNERLSIATFHDPSLESVIGPISSLITPET 334
>4XAE-A nrPDB
Length = 373
Score = 306 bits (783), Expect = 9e-84, Method: Composition-based stats.
Identities = 84/303 (27%), Positives = 148/303 (48%), Gaps = 31/303 (10%)
Query: 2 EKNMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYK 61
E + PV+D+S + D+ + +A E WGFF+++NHG+P +++D ++ T +
Sbjct: 69 ETDEAIPVIDMSN---PDEDRVAEAVCDAAEKWGFFQVINHGVPLEVLDDVKAATHKFFN 125
Query: 62 TCQEQKFNDMLKSKGLDNL-----------ETEVEDVDWESTFYVRHLPQSNLNDISDVS 110
E+K K L E +E D+ S F+V
Sbjct: 126 LPVEEK-RKFTKENSLSTTVRFGTSFSPLAEQALEWKDYLSLFFVSEAEAEQF-----WP 179
Query: 111 DEYRTAMKDFGKRLENLAEDLLDLLCENLGLEK--GYLKKVFHGTKGPTFGTKVSNYPPC 168
D R ++ + + + LL+ L +NL +++ + +F G+ ++ YP C
Sbjct: 180 DICRNETLEYINKSKKMVRRLLEYLGKNLNVKELDETKESLFMGS----IRVNLNYYPIC 235
Query: 169 PKPEMIKGLRAHTDAGGIILLFQDDKVSGLQLLK--DGDWIDVPPLNHSIVINLGDQLEV 226
P P++ G+ H+D + +L QD ++ GL + G+W+ VPP+ S VIN+GD +++
Sbjct: 236 PNPDLTVGVGRHSDVSSLTILLQD-QIGGLHVRSLASGNWVHVPPVAGSFVINIGDAMQI 294
Query: 227 ITNGKYKSVLHRVVTQQEGNRMSVASFYNPGSDAEISPATSLVEKDSE--YPSFVFDDYM 284
++NG YKSV HRV+ NR+SV F NP ++ I P ++ E Y ++ DY+
Sbjct: 295 MSNGLYKSVEHRVLANGYNNRISVPIFVNPKPESVIGPLPEVIANGEEPIYRDVLYSDYV 354
Query: 285 KLY 287
K +
Sbjct: 355 KYF 357
>6JYV-A nrPDB
Length = 339
Score = 300 bits (767), Expect = 7e-82, Method: Composition-based stats.
Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 30/295 (10%)
Query: 6 KFPVVDLSKLNGEE---RDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYKT 62
P++D++ L G + R I+ AC GFF +V HG+ L++++E++ + +
Sbjct: 10 SLPIIDIAALAGSDPAARRSVAVRIDRACREQGFFYVVGHGVEAQLVERLERLARQFFAL 69
Query: 63 CQEQKFNDMLK-----SKGLDNLETEVED--VDWESTFYV------------RHLPQSNL 103
+ K ++ +G L E+ DW+ Y+ P
Sbjct: 70 DETSKLRWRMELGGRAWRGYFPLGGELTSNRPDWKEGLYLGSELDAEHPEVRAGTPLHGA 129
Query: 104 NDISDVSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVS 163
N +V R + ++ + L++ + LGLE Y + G P ++
Sbjct: 130 NLFPEVPG-LRETLLEYLDATTRVGHRLMEGIALGLGLEADYFAARYTG--DPLILFRLF 186
Query: 164 NYPPCPKPEMIK---GLRAHTDAGGIILLFQDDKVSGLQLLKDGDWIDVPPLNHSIVINL 220
NYP P PE + G+ HTD G + LL QD + GLQ+ W++ PP+ S V NL
Sbjct: 187 NYPSQPVPEGLDVQWGVGEHTDYGLLTLLHQD-AIGGLQVRTPQGWLEAPPIPGSFVCNL 245
Query: 221 GDQLEVITNGKYKSVLHRVVTQQEG-NRMSVASFYNPGSDAEISPATSLVEKDSE 274
GD LE +T G Y+S HRV G +R+S F++P A + P L E +
Sbjct: 246 GDMLERMTGGLYRSTPHRVARNTSGRDRLSFPLFFDPNFHARVQPIEGLPEVPEQ 300
>2VAU-A nrPDB
Length = 331
Score = 251 bits (641), Expect = 3e-67, Method: Composition-based stats.
Identities = 71/317 (22%), Positives = 131/317 (41%), Gaps = 45/317 (14%)
Query: 7 FPVVDLSKLNGEERDQTMAL---INEACENWGFFEIVNHGLPHDLMDKIEKMTKDH-YKT 62
P +D+S L G+++ M + I+ A + GFF VNHG+ + ++ + TK+
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHMSI 65
Query: 63 CQEQKFNDMLKSKGLDNLET-------------EVEDVDWESTFYVRHLPQ----SNLND 105
E+K++ +++ ++ + VE + + + P+ + ++
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 106 ISDVSDEYR-TAMKDFGKR----LENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGT 160
++ DE + +DF ++ + L+ LL LG E+ + + H T +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFAR--HFKPDDTLAS 183
Query: 161 KVS-NYPPC-PKPEMIKGLRA---------HTDAGGIILLFQDDKVSGLQLLKDGDWIDV 209
V YP P PE A H D I +L+Q + V LQ+ + D+
Sbjct: 184 VVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDI 242
Query: 210 PPLNHSIVINLGDQLEVITNGKYKSVLHRVVTQQEGNRMSVASFYNPGSDAEISPA-TSL 268
+ +IN G + +TN YK+ +HRV R S+ F N G D+ I P
Sbjct: 243 EADDTGYLINCGSYMAHLTNNYYKAPIHRV-KWVNAERQSLPFFVNLGYDSVIDPFDPRE 301
Query: 269 VEKDSEYPSFVFDDYMK 285
S+ + DY++
Sbjct: 302 PNGKSDREPLSYGDYLQ 318
>5C3R-A nrPDB
Length = 343
Score = 248 bits (632), Expect = 3e-66, Method: Composition-based stats.
Identities = 77/323 (23%), Positives = 134/323 (41%), Gaps = 45/323 (13%)
Query: 2 EKNMKFPVVDLSK-LNGEE--RDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKD 58
E + P++D SK L G+E + +T I + GF + N + D + + +
Sbjct: 10 EDGLVIPLIDFSKFLEGDETLKLETAKAILHGFQTAGFIYLKNIPIQPDFREHVFNTSAK 69
Query: 59 HYKTCQEQKF---------NDMLKSKGLDNLET-----EVED-----VDWESTFYV-RHL 98
+K +E+K N + G + + E+E D + ++ + R
Sbjct: 70 FFKLPKEKKLEVGWTTPEANRGYSAPGREKVTQLTDPAEIEKIRSAAPDIKESYEIGRED 129
Query: 99 PQSNLNDISDVSDE---YRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKG 155
+ N D+ +++ M +F + + L +++ + +G++ Y
Sbjct: 130 EPGHPNPWPAEQDDLVGFKSTMNNFFDQCKALHIEVMRAIAVGMGIDANYFDSFVDVGDN 189
Query: 156 PTFGTKVSNYPPCPKPEMIK------GLRAHTDAGGIILLFQDDKVSGLQLLK-DGDWID 208
++ +YP K E+ K HTD G I LLFQD + GLQ+ +G +ID
Sbjct: 190 IL---RLLHYPAV-KSEVFKINPGQVRAGEHTDYGSITLLFQDSR-GGLQVKSPNGQFID 244
Query: 209 VPPLNHSIVINLGDQLEVITNGKYKSVLHRVV-----TQQEGNRMSVASFYNPG--SDAE 261
P+ +++V+N GD L +N KS +HRVV R S+A F NP S E
Sbjct: 245 ATPIENTVVVNAGDLLARWSNDTIKSTVHRVVEPPKQEDVHPPRYSIAYFCNPNHKSYIE 304
Query: 262 ISPATSLVEKDSEYPSFVFDDYM 284
P T E + +Y Y+
Sbjct: 305 AIPGTYAAESERKYEGINSGKYL 327
>5LSQ-A nrPDB
Length = 359
Score = 184 bits (467), Expect = 4e-47, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 89/288 (30%), Gaps = 47/288 (16%)
Query: 25 ALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYKTCQEQKF----NDMLKSKGLDNL 80
+ +A + G F+I + +K K K +
Sbjct: 33 RALIQAWQKDGIFQIKTDSEQDRKTQEAMAASKQFCKEPLTFKSSCVSDLTYSGYVASGE 92
Query: 81 ETEVEDVDWESTFYV------------RHLPQSNLNDISDVSDEYRTAMKDFGKRLENLA 128
E D+ F V P ++ Y+ +MK F + L
Sbjct: 93 EVTAGKPDFPEIFTVCKDLSVGDQRVKAGWPCHGPVPWP--NNTYQKSMKTFMEELGLAG 150
Query: 129 EDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAHTDAGGIIL 188
E LL L L + T+ +V +PP + +G+ AHTD G +++
Sbjct: 151 ERLLKLTALGFELPINTFTDL---TRDGWHHMRVLRFPP-QTSTLSRGIGAHTDYGLLVI 206
Query: 189 LFQDDKVSGLQLL-----------------------KDGDWIDVPPLNHSIVINLGDQLE 225
QDD V GL + D W V P + GD L+
Sbjct: 207 AAQDD-VGGLYIRPPVEGEKRNRNWLPGESSAGMFEHDEPWTFVTPTPGVWTVFPGDILQ 265
Query: 226 VITNGKYKSVLHRVVTQQEGNRMSVASFYNPGSDAEISPATSLVEKDS 273
+T G+ S H+V R + A F+ P +A P +
Sbjct: 266 FMTGGQLLSTPHKVKLNTR-ERFACAYFHEPNFEASAYPLFEPSANER 312
>3ON7-A nrPDB
Length = 280
Score = 158 bits (398), Expect = 4e-39, Method: Composition-based stats.
Identities = 58/279 (20%), Positives = 112/279 (40%), Gaps = 37/279 (13%)
Query: 4 NMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYKTC 63
MK +D + E+ GF + NH + +L+++I + + +
Sbjct: 1 GMKLETIDYRA------ADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSE 54
Query: 64 QEQKFNDMLKSKGLDNLETEVED------VDWESTFYVRHLPQSNLNDISDVSDEYRTAM 117
+ +F ++ + E D + + ++ + D R +
Sbjct: 55 AKNEFMFNRETHDGFFPASISETAKGHTVKDIKEYY--------HVYPWGRIPDSLRANI 106
Query: 118 KDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFG------TKVSNYPPCPKP 171
+ ++ LA +LL+ + +K F ++ +YPP
Sbjct: 107 LAYYEKANTLASELLEWIET---YSPDEIKAKFSIPLPEMIANSHKTLLRILHYPPMTGD 163
Query: 172 EMIKGLRA--HTDAGGIILLFQDDKVSGLQLL-KDGDWIDVPPLNHSIVINLGDQLEVIT 228
E + +RA H D I +L ++ GLQ+ KDG W+DVP +I+IN+GD L+ +
Sbjct: 164 EEMGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDMLQEAS 222
Query: 229 NGKYKSVLHRVV----TQQEGNRMSVASFYNPGSDAEIS 263
+G + S HRV+ T + +R+S+ F +P +S
Sbjct: 223 DGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>1W2A-X nrPDB
Length = 331
Score = 74.4 bits (181), Expect = 6e-14, Method: Composition-based stats.
Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 31/278 (11%)
Query: 4 NMKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHGLPHDLMDKIEKMTKDHYKTC 63
+ P L++L ++ + G F + + GL + + + D ++
Sbjct: 22 DTTVPTFSLAEL---QQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHG 78
Query: 64 QEQK----------FNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQSNLNDISDVSDEY 113
E + ++ + + ++ N S ++
Sbjct: 79 SEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTAD-NLFP--SGDF 135
Query: 114 RTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPK--- 170
+ R + + + G E + +P P+
Sbjct: 136 ERIWTQYFDRQYTASRAVAREVLRATGTEPD---GGVEAFLDCEPLLRFRYFPQVPEHRS 192
Query: 171 -PEMIKGLRAHTDAGGIILLFQDDKVSG---LQLLKDGDWIDVPPLNHSIVINLGDQLEV 226
E + H D + L+ Q +G LQ G + D+P ++++ G +
Sbjct: 193 AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATL 252
Query: 227 ITNGKYKSVLHRVVTQQEG-----NRMSVASFYNPGSD 259
+T G+ K+ H V + +R S F P +D
Sbjct: 253 VTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>3J0A-A nrPDB
Length = 844
Score = 30.5 bits (67), Expect = 0.91, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 9/142 (6%)
Query: 81 ETEVEDVDWESTFYVRHLP-----QSNLNDISDVSDEYRTAMKDFGKRLENLAEDLLDLL 135
E +E++D +++ +P N N S S + + ++L L E++L L
Sbjct: 410 ENRLENLDIL--YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF-LGENMLQ-L 465
Query: 136 CENLGLEKGYLKKVFHGTKGPTFGTKVSNYPPCPKPEMIKGLRAHTDAGGIILLFQDDKV 195
L + + H +++ PP + ++ + +L +D
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525
Query: 196 SGLQLLKDGDWIDVPPLNHSIV 217
+ L++L + P V
Sbjct: 526 ANLEILDISRNQLLAPNPDVFV 547
>4KVK-A nrPDB
Length = 621
Score = 29.7 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 41 NHGLPHDLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVEDVDWESTFYVRHLPQ 100
NHG+P+ L ++ + + H K D +N +ED+D ++ Q
Sbjct: 367 NHGVPYSLTEEFTSVYRMHSLIPSTLKLRDPTGQPDANNSPPCLEDIDIGEMIGLKGEEQ 426
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.305 0.126 0.318
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,266,712
Number of Sequences: 36641
Number of extensions: 434955
Number of successful extensions: 1352
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 44
length of query: 320
length of database: 10,336,785
effective HSP length: 97
effective length of query: 223
effective length of database: 6,782,608
effective search space: 1512521584
effective search space used: 1512521584
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 59 (27.4 bits)