BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q17QQ3 (206 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6MDN-H nrPDB 394 e-110 1SFC-D nrPDB 175 1e-44 1JTH-A nrPDB 157 3e-39 2N1T-D nrPDB 150 5e-37 5LOW-D nrPDB 137 3e-33 5KJ7-C nrPDB 134 2e-32 3ZUR-A nrPDB 128 2e-30 5LOW-E nrPDB 127 3e-30 5LOB-E nrPDB 127 3e-30 1KIL-D nrPDB 126 6e-30 3ZUS-A nrPDB 83 8e-17 2NPS-D nrPDB 34 0.041 3TJ1-A nrPDB 31 0.37 5XU1-M nrPDB 28 3.6 1IXR-A nrPDB 27 4.7 5MIM-A nrPDB 27 6.0 4UZY-A nrPDB 27 6.5 4U1C-C nrPDB 27 6.5 6FYX-q nrPDB 27 7.9 3JAP-p nrPDB 27 8.1 3HL2-A nrPDB 26 9.8 >6MDN-H nrPDB Length = 207 Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/204 (95%), Positives = 200/204 (98%) Query: 1 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 60 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQL+R+ Sbjct: 4 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRV 63 Query: 61 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWGNNQDGVVASQPARV 120 EEGM+ IN+DMKEAEKNL DLGK CGL +CPCNKLKSSDAYKKAWGNNQDGVVASQPARV Sbjct: 64 EEGMNHINQDMKEAEKNLKDLGKCCGLFICPCNKLKSSDAYKKAWGNNQDGVVASQPARV 123 Query: 121 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR 180 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR Sbjct: 124 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR 183 Query: 181 IMEKADSNKTRIDEANQRATKMLG 204 IMEKADSNKTRIDEANQRATKMLG Sbjct: 184 IMEKADSNKTRIDEANQRATKMLG 207 >1SFC-D nrPDB Length = 87 Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 87/87 (100%), Positives = 87/87 (100%) Query: 120 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID 179 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID Sbjct: 1 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID 60 Query: 180 RIMEKADSNKTRIDEANQRATKMLGSG 206 RIMEKADSNKTRIDEANQRATKMLGSG Sbjct: 61 RIMEKADSNKTRIDEANQRATKMLGSG 87 >1JTH-A nrPDB Length = 82 Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/82 (100%), Positives = 82/82 (100%) Query: 1 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 60 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI Sbjct: 1 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 60 Query: 61 EEGMDQINKDMKEAEKNLTDLG 82 EEGMDQINKDMKEAEKNLTDLG Sbjct: 61 EEGMDQINKDMKEAEKNLTDLG 82 >2N1T-D nrPDB Length = 74 Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 74/74 (100%), Positives = 74/74 (100%) Query: 131 GGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 190 GGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT Sbjct: 1 GGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 60 Query: 191 RIDEANQRATKMLG 204 RIDEANQRATKMLG Sbjct: 61 RIDEANQRATKMLG 74 >5LOW-D nrPDB Length = 95 Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 70/76 (92%), Positives = 74/76 (97%) Query: 7 MRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQ 66 MRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQL+R+EEGM+ Sbjct: 20 MRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNH 79 Query: 67 INKDMKEAEKNLTDLG 82 IN+DMKEAEKNL DLG Sbjct: 80 INQDMKEAEKNLKDLG 95 >5KJ7-C nrPDB Length = 75 Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/75 (92%), Positives = 73/75 (97%) Query: 9 NELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQIN 68 NELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQL+R+EEGM+ IN Sbjct: 1 NELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHIN 60 Query: 69 KDMKEAEKNLTDLGK 83 +DMKEAEKNL DLGK Sbjct: 61 QDMKEAEKNLKDLGK 75 >3ZUR-A nrPDB Length = 960 Score = 128 bits (322), Expect = 2e-30, Method: Composition-based stats. Identities = 62/63 (98%), Positives = 63/63 (100%) Query: 144 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 203 +EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML Sbjct: 450 SEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 509 Query: 204 GSG 206 GSG Sbjct: 510 GSG 512 >5LOW-E nrPDB Length = 82 Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/63 (100%), Positives = 63/63 (100%) Query: 141 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 200 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT Sbjct: 20 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 79 Query: 201 KML 203 KML Sbjct: 80 KML 82 >5LOB-E nrPDB Length = 96 Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/63 (100%), Positives = 63/63 (100%) Query: 141 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 200 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT Sbjct: 34 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 93 Query: 201 KML 203 KML Sbjct: 94 KML 96 >1KIL-D nrPDB Length = 66 Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 63/63 (100%), Positives = 63/63 (100%) Query: 141 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 200 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT Sbjct: 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 Query: 201 KML 203 KML Sbjct: 63 KML 65 >3ZUS-A nrPDB Length = 927 Score = 83.2 bits (204), Expect = 8e-17, Method: Composition-based stats. Identities = 39/63 (61%), Positives = 50/63 (79%) Query: 144 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 203 +EM+ENL QV I+GNL+ MAL++GNEID QNRQI RI +KAD+N+ RID AN RA K++ Sbjct: 433 DEMEENLTQVGSILGNLKDMALNIGNEIDAQNRQIKRITDKADTNRDRIDIANARAKKLI 492 Query: 204 GSG 206 S Sbjct: 493 DSA 495 >2NPS-D nrPDB Length = 82 Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 147 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 202 DE LE VSG IG L++M+ +G E++ Q ++ + +S ++R+D ++ K+ Sbjct: 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKV 73 >3TJ1-A nrPDB Length = 649 Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%) Query: 102 KKAWGNNQDGVVASQPARVVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLR 161 +K ++ G+V QP + DE A+ F++ +D +D+N GII N Sbjct: 46 RKVQFSDSTGLVTLQPEEIKDEVFSAAMYSRFVKSALDD-----LDKNDSTQIGIIAN-- 98 Query: 162 HMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 205 +AL N ++ ++ +++ SN RI+ + R T ++ S Sbjct: 99 QVALPSKNPERINDKNLNILLDILSSNINRIESS--RGTFLIQS 140 >5XU1-M nrPDB Length = 419 Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 6/37 (16%) Query: 43 GIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNLT 79 G+ ++V++ G+ L R Q+NKDM +++KN++ Sbjct: 28 GVSSVVVIMALGDSLSR------QVNKDMTKSQKNIS 58 >1IXR-A nrPDB Length = 191 Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 26 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQL 57 L++ LQ +EE K+ G+ T ++L E+G L Sbjct: 28 LQAPTPFLQALEEGKEVGVHTHLLLKEEGLSL 59 >5MIM-A nrPDB Length = 482 Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%) Query: 101 YKKAWGNNQDGVVASQPARVVDEREQMAISGG-------FIRRVTNDARENE 145 Y +WG DG PAR+ +E +S G F+ N RE++ Sbjct: 143 YSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHD 194 >4UZY-A nrPDB Length = 651 Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%) Query: 12 EEMQRRADQLADESLESTRRMLQLVEESK-----DAGIRTLVMLDEQGEQLERIEEGMDQ 66 EE RR D+LA +E RR+ + +++++ DA R + DE E M Sbjct: 368 EEAFRRFDELATRHVEQLRRLTKQIQDARIARDNDAIKRAINEYDEALEAYIPGLMAMAS 427 Query: 67 INKDMK---EAEKNLTDLGKFC 85 I DM+ EK +FC Sbjct: 428 IYWDMELYSNVEKIFRQSAEFC 449 >4U1C-C nrPDB Length = 567 Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust. Identities = 10/31 (32%), Positives = 23/31 (74%) Query: 48 VMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78 + + E+G+++ ++EE M ++NK+ K A++ L Sbjct: 530 IFVVEKGDEITKLEEAMVKLNKEYKIAKERL 560 >6FYX-q nrPDB Length = 812 Score = 26.6 bits (57), Expect = 7.9, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 23/31 (74%) Query: 48 VMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78 + + E+G+++ ++EE M ++NK+ K A++ L Sbjct: 775 IFVVEKGDEITKLEEAMVKLNKEYKIAKERL 805 >3JAP-p nrPDB Length = 652 Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 23/31 (74%) Query: 48 VMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78 + + E+G+++ ++EE M ++NK+ K A++ L Sbjct: 615 IFVVEKGDEITKLEEAMVKLNKEYKIAKERL 645 >3HL2-A nrPDB Length = 501 Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 57 LERIEEGMDQINKDMKEAEKNLTDLGKFCGLCV 89 +E + EG D++ D+K E + +LG C LC+ Sbjct: 189 IENVLEG-DELRTDLKAVEAKVQELGPDCILCI 220 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6MDN-H nrPDB 321 1e-88 1SFC-D nrPDB 132 1e-31 3ZUR-A nrPDB 124 3e-29 5LOW-D nrPDB 115 2e-26 2N1T-D nrPDB 113 5e-26 1JTH-A nrPDB 110 3e-25 3ZUS-A nrPDB 109 8e-25 5KJ7-C nrPDB 106 9e-24 5LOW-E nrPDB 97 7e-21 5LOB-E nrPDB 97 7e-21 1KIL-D nrPDB 95 3e-20 Sequences not found previously or not previously below threshold: 3TJ1-A nrPDB 33 0.094 4N78-F nrPDB 32 0.14 2NPS-D nrPDB 32 0.29 5N6U-A nrPDB 29 1.3 4UZY-A nrPDB 28 2.3 2QB5-A nrPDB 28 2.3 3P8C-F nrPDB 28 2.6 1IXR-A nrPDB 28 4.0 4PSX-A nrPDB 28 4.2 CONVERGED! >6MDN-H nrPDB Length = 207 Score = 321 bits (824), Expect = 1e-88, Method: Composition-based stats. Identities = 195/204 (95%), Positives = 200/204 (98%) Query: 1 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 60 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQL+R+ Sbjct: 4 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRV 63 Query: 61 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWGNNQDGVVASQPARV 120 EEGM+ IN+DMKEAEKNL DLGK CGL +CPCNKLKSSDAYKKAWGNNQDGVVASQPARV Sbjct: 64 EEGMNHINQDMKEAEKNLKDLGKCCGLFICPCNKLKSSDAYKKAWGNNQDGVVASQPARV 123 Query: 121 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR 180 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR Sbjct: 124 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR 183 Query: 181 IMEKADSNKTRIDEANQRATKMLG 204 IMEKADSNKTRIDEANQRATKMLG Sbjct: 184 IMEKADSNKTRIDEANQRATKMLG 207 >1SFC-D nrPDB Length = 87 Score = 132 bits (332), Expect = 1e-31, Method: Composition-based stats. Identities = 87/87 (100%), Positives = 87/87 (100%) Query: 120 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID 179 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID Sbjct: 1 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID 60 Query: 180 RIMEKADSNKTRIDEANQRATKMLGSG 206 RIMEKADSNKTRIDEANQRATKMLGSG Sbjct: 61 RIMEKADSNKTRIDEANQRATKMLGSG 87 >3ZUR-A nrPDB Length = 960 Score = 124 bits (311), Expect = 3e-29, Method: Composition-based stats. Identities = 62/63 (98%), Positives = 63/63 (100%) Query: 144 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 203 +EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML Sbjct: 450 SEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 509 Query: 204 GSG 206 GSG Sbjct: 510 GSG 512 >5LOW-D nrPDB Length = 95 Score = 115 bits (287), Expect = 2e-26, Method: Composition-based stats. Identities = 70/76 (92%), Positives = 74/76 (97%) Query: 7 MRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQ 66 MRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQL+R+EEGM+ Sbjct: 20 MRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNH 79 Query: 67 INKDMKEAEKNLTDLG 82 IN+DMKEAEKNL DLG Sbjct: 80 INQDMKEAEKNLKDLG 95 >2N1T-D nrPDB Length = 74 Score = 113 bits (283), Expect = 5e-26, Method: Composition-based stats. Identities = 74/74 (100%), Positives = 74/74 (100%) Query: 131 GGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 190 GGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT Sbjct: 1 GGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 60 Query: 191 RIDEANQRATKMLG 204 RIDEANQRATKMLG Sbjct: 61 RIDEANQRATKMLG 74 >1JTH-A nrPDB Length = 82 Score = 110 bits (276), Expect = 3e-25, Method: Composition-based stats. Identities = 82/82 (100%), Positives = 82/82 (100%) Query: 1 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 60 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI Sbjct: 1 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 60 Query: 61 EEGMDQINKDMKEAEKNLTDLG 82 EEGMDQINKDMKEAEKNLTDLG Sbjct: 61 EEGMDQINKDMKEAEKNLTDLG 82 >3ZUS-A nrPDB Length = 927 Score = 109 bits (273), Expect = 8e-25, Method: Composition-based stats. Identities = 39/63 (61%), Positives = 50/63 (79%) Query: 144 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 203 +EM+ENL QV I+GNL+ MAL++GNEID QNRQI RI +KAD+N+ RID AN RA K++ Sbjct: 433 DEMEENLTQVGSILGNLKDMALNIGNEIDAQNRQIKRITDKADTNRDRIDIANARAKKLI 492 Query: 204 GSG 206 S Sbjct: 493 DSA 495 >5KJ7-C nrPDB Length = 75 Score = 106 bits (264), Expect = 9e-24, Method: Composition-based stats. Identities = 69/75 (92%), Positives = 73/75 (97%) Query: 9 NELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQIN 68 NELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQL+R+EEGM+ IN Sbjct: 1 NELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHIN 60 Query: 69 KDMKEAEKNLTDLGK 83 +DMKEAEKNL DLGK Sbjct: 61 QDMKEAEKNLKDLGK 75 >5LOW-E nrPDB Length = 82 Score = 96.6 bits (239), Expect = 7e-21, Method: Composition-based stats. Identities = 63/63 (100%), Positives = 63/63 (100%) Query: 141 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 200 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT Sbjct: 20 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 79 Query: 201 KML 203 KML Sbjct: 80 KML 82 >5LOB-E nrPDB Length = 96 Score = 96.6 bits (239), Expect = 7e-21, Method: Composition-based stats. Identities = 63/63 (100%), Positives = 63/63 (100%) Query: 141 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 200 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT Sbjct: 34 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 93 Query: 201 KML 203 KML Sbjct: 94 KML 96 >1KIL-D nrPDB Length = 66 Score = 94.7 bits (234), Expect = 3e-20, Method: Composition-based stats. Identities = 63/63 (100%), Positives = 63/63 (100%) Query: 141 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 200 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT Sbjct: 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 Query: 201 KML 203 KML Sbjct: 63 KML 65 >3TJ1-A nrPDB Length = 649 Score = 33.1 bits (74), Expect = 0.094, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 14/118 (11%) Query: 88 CVCPCNKLKSSDAYKKAWGNNQDGVVASQPARVVDEREQMAISGGFIRRVTNDARENEMD 147 V P ++ K +K ++ G+V QP + DE A+ F++ +D +D Sbjct: 37 FVAPIDQKK-----RKVQFSDSTGLVTLQPEEIKDEVFSAAMYSRFVKSALDD-----LD 86 Query: 148 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 205 +N GII N +AL N ++ ++ +++ SN RI+ + R T ++ S Sbjct: 87 KNDSTQIGIIAN--QVALPSKNPERINDKNLNILLDILSSNINRIE--SSRGTFLIQS 140 >4N78-F nrPDB Length = 514 Score = 32.3 bits (72), Expect = 0.14, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Query: 3 EDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEE 62 + AD + LEE + Q SL S ++ + + L MLD Q QL R+E Sbjct: 40 QSADKQRALEETKAYTTQ----SLASVAYLINTLANN------VLQMLDIQASQLRRMES 89 Query: 63 GMDQINK 69 ++ I++ Sbjct: 90 SINHISQ 96 >2NPS-D nrPDB Length = 82 Score = 31.5 bits (70), Expect = 0.29, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 147 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 202 DE LE VSG IG L++M+ +G E++ Q ++ + +S ++R+D ++ K+ Sbjct: 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKV 73 >5N6U-A nrPDB Length = 836 Score = 29.2 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 10/16 (62%), Positives = 15/16 (93%) Query: 47 LVMLDEQGEQLERIEE 62 LV+LDE+GE L+++EE Sbjct: 297 LVLLDEKGEVLDKVEE 312 >4UZY-A nrPDB Length = 651 Score = 28.4 bits (62), Expect = 2.3, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%) Query: 12 EEMQRRADQLADESLESTRRMLQLVEESK-----DAGIRTLVMLDEQGEQLERIEEGMDQ 66 EE RR D+LA +E RR+ + +++++ DA R + DE E M Sbjct: 368 EEAFRRFDELATRHVEQLRRLTKQIQDARIARDNDAIKRAINEYDEALEAYIPGLMAMAS 427 Query: 67 INKDMK---EAEKNLTDLGKFC 85 I DM+ EK +FC Sbjct: 428 IYWDMELYSNVEKIFRQSAEFC 449 >2QB5-A nrPDB Length = 347 Score = 28.4 bits (62), Expect = 2.3, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 25/134 (18%) Query: 9 NELEEMQRRADQLADESLESTRRMLQLVEESKDA-------GIRTLVMLDEQGEQLERIE 61 ++L ++ ADQ +SLE R + ++ + IRTL+ + E + +IE Sbjct: 70 HKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIE 129 Query: 62 EGMDQINKDMKEAEKNLTDLGKFCG--------------LCVCPCNKLKSSDAYKKAWGN 107 M +D + +L CG +C +++++ A Sbjct: 130 AYM----EDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVF 185 Query: 108 NQDGVVASQPARVV 121 NQ+G+ A QP VV Sbjct: 186 NQEGLNAIQPPCVV 199 >3P8C-F nrPDB Length = 159 Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Query: 3 EDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEE 62 + AD + LEE + Q SL S ++ + + L MLD Q QL R+E Sbjct: 40 QSADKQRALEETKAYTTQ----SLASVAYLINTLANN------VLQMLDIQASQLRRMES 89 Query: 63 GMDQINK 69 ++ I++ Sbjct: 90 SINHISQ 96 >1IXR-A nrPDB Length = 191 Score = 27.7 bits (60), Expect = 4.0, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 26 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQL 57 L++ LQ +EE K+ G+ T ++L E+G L Sbjct: 28 LQAPTPFLQALEEGKEVGVHTHLLLKEEGLSL 59 >4PSX-A nrPDB Length = 320 Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 8/57 (14%) Query: 3 EDADMRNELEEMQR--------RADQLADESLESTRRMLQLVEESKDAGIRTLVMLD 51 +D RN+++ +++ + L+DE LES+R+ L+L E + + L++L+ Sbjct: 262 DDLRDRNDIQRLRKLGYDAVFQKHSDLSDEFLESSRKSLKLEERQFNRLVEMLLLLN 318 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.138 0.387 Lambda K H 0.267 0.0399 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,893,684 Number of Sequences: 36641 Number of extensions: 261073 Number of successful extensions: 845 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 34 Number of HSP's that attempted gapping in prelim test: 791 Number of HSP's gapped (non-prelim): 87 length of query: 206 length of database: 10,336,785 effective HSP length: 92 effective length of query: 114 effective length of database: 6,965,813 effective search space: 794102682 effective search space used: 794102682 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 57 (26.6 bits)