BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q16540
         (153 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3J7Y-U nrPDB                                                          315   4e-87
4V19-X nrPDB                                                          246   2e-66
4CE4-X nrPDB                                                          130   2e-31
5MRF-P nrPDB                                                           48   2e-06
3J6B-P nrPDB                                                           47   3e-06
3J7Z-T nrPDB                                                           41   2e-04
6HIX-AX nrPDB                                                          32   0.11 
6FU8-C nrPDB                                                           30   0.36 
5UOW-A nrPDB                                                           29   0.63 
3J7Y-E nrPDB                                                           28   1.6  
5FXI-A nrPDB                                                           28   1.9  
5MYJ-BH nrPDB                                                          27   2.4  
5TF2-A nrPDB                                                           27   2.7  
4TXK-A nrPDB                                                           27   3.9  
1VP4-A nrPDB                                                           26   6.2  
2PFJ-A nrPDB                                                           26   6.8  

>3J7Y-U nrPDB
          Length = 153

 Score =  315 bits (807), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 60
           MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
Sbjct: 1   MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 60

Query: 61  YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG 120
           YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
Sbjct: 61  YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG 120

Query: 121 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL 153
           SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
Sbjct: 121 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL 153


>4V19-X nrPDB
          Length = 150

 Score =  246 bits (629), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/154 (79%), Positives = 137/154 (88%), Gaps = 5/154 (3%)

Query: 1   MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 60
           MARNV+YPLY+LG PQLRVFRTNFFIQLVRPG AQPEDTVQFRIPMEMTRVDLRNYLE I
Sbjct: 1   MARNVLYPLYQLGNPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERI 60

Query: 61  YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG 120
           YNVPVAAVRTRVQ+GSN+RRDHRN+RIKKPDYKVAYVQLA GQTFTFPDLFPE+    +G
Sbjct: 61  YNVPVAAVRTRVQYGSNRRRDHRNIRIKKPDYKVAYVQLALGQTFTFPDLFPER----KG 116

Query: 121 SAAD-DLYSMLEEERQQRQSSDPRRGGVPSWFGL 153
           ++ D D+   + E+++Q+ S DPRRGGVP WFGL
Sbjct: 117 ASVDVDVRDQVLEDQRQKHSPDPRRGGVPGWFGL 150


>4CE4-X nrPDB
          Length = 87

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/68 (92%), Positives = 66/68 (97%)

Query: 36  PEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVA 95
           PEDTVQFRIPMEMTRVDLRNYLE IYNVPVAAVRTRVQ+GSN+RRDHRN+RIKKPDYKVA
Sbjct: 15  PEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQYGSNRRRDHRNIRIKKPDYKVA 74

Query: 96  YVQLAHGQ 103
           YVQLA GQ
Sbjct: 75  YVQLALGQ 82


>5MRF-P nrPDB
          Length = 207

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 10  YRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVR 69
           +++GG   +V+     I L+RP         +F +P    ++DLR+YL  IY +    + 
Sbjct: 23  FKVGGN--KVYFPKARIILLRPNAKHTPYQAKFIVPKSFNKLDLRDYLYHIYGLRAMNIT 80

Query: 70  TRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAAD----D 125
           T++ HG   R + +  R ++P  K   +++        P ++PE+    E S  D    D
Sbjct: 81  TQLLHGKFNRMNLQTTRFREPQIKKMTIEMEE------PFIWPEEPRPDENSFWDSTTPD 134

Query: 126 LYSMLEEERQQRQSSDPRRGGV 147
                 EER     SD  + G 
Sbjct: 135 NMEKYREERLNCLGSDANKPGT 156


>3J6B-P nrPDB
          Length = 263

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 10  YRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVR 69
           +++GG   +V+     I L+RP         +F +P    ++DLR+YL  IY +    + 
Sbjct: 77  FKVGGN--KVYFPKARIILLRPNAKHTPYQAKFIVPKSFNKLDLRDYLYHIYGLRAMNIT 134

Query: 70  TRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAAD----D 125
           T++ HG   R + +  R ++P  K   +++        P ++PE+    E S  D    D
Sbjct: 135 TQLLHGKFNRMNLQTTRFREPQIKKMTIEMEE------PFIWPEEPRPDENSFWDSTTPD 188

Query: 126 LYSMLEEERQQRQSSDPRRGGV 147
                 EER     SD  + G 
Sbjct: 189 NMEKYREERLNCLGSDANKPGT 210


>3J7Z-T nrPDB
          Length = 100

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKV 94
           +  +T+  ++  + T+ +++  ++ ++ V V  V T V  G  KR   R  R  + D+K 
Sbjct: 25  EKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGR--RSDWKK 82

Query: 95  AYVQLAHGQTFTF 107
           AYV L  GQ   F
Sbjct: 83  AYVTLKEGQNLDF 95


>6HIX-AX nrPDB
          Length = 246

 Score = 32.0 bits (71), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 42  FRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQL 99
           F+IP  M++V+L NYL+ IY +              + ++         DYKVA V+L
Sbjct: 161 FQIPCSMSKVELVNYLKNIYGIDNVVRVEVRNRRGRRYKNEVGEIKMMDDYKVAVVEL 218


>6FU8-C nrPDB
          Length = 82

 Score = 30.4 bits (67), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 13/71 (18%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKV 94
           +  +T+  ++  + T+ +++  ++ ++ V V  V T V     KRR          D+K 
Sbjct: 25  EKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVV----KRR---------SDWKK 71

Query: 95  AYVQLAHGQTF 105
           AYV L  GQ  
Sbjct: 72  AYVTLKEGQNL 82


>5UOW-A nrPDB
          Length = 814

 Score = 29.3 bits (64), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 34/83 (40%)

Query: 55  NYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEK 114
           +Y  G Y +PV  + TR+   S+K      +R   P    A V     + F +  +    
Sbjct: 86  SYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIV 145

Query: 115 DESPEGSAADDLYSMLEEERQQR 137
            +  EG AA      L EE++ +
Sbjct: 146 SDDHEGRAAQKKLETLLEEKESK 168


>3J7Y-E nrPDB
          Length = 348

 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 82  HRNVRIKKPDYKV-AYVQLAHGQTFTFPDLFPEKDESPEGSAADDLY 127
           H+N  +K  D K+ AY  L  G+   FP  FP+ DE       +DLY
Sbjct: 292 HKNCLVKVKDSKLPAYKDL--GKNLPFPTYFPDGDEE---ELPEDLY 333


>5FXI-A nrPDB
          Length = 846

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 34/84 (40%)

Query: 55  NYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEK 114
           +Y  G Y +PV  + TR+   S+K      +R   P    + V     + + +  +    
Sbjct: 86  SYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLV 145

Query: 115 DESPEGSAADDLYSMLEEERQQRQ 138
            +  EG AA      L EER+ + 
Sbjct: 146 SDDHEGRAAQKRLETLLEERESKS 169


>5MYJ-BH nrPDB
          Length = 178

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 14 GPQLRVFRTNFFIQLVRP--GVAQPEDTVQFRIPMEMTRVDLRNYLEGIYN 62
          G  +R F  N  +++      V +P DT + ++    TR  L N +EG+ N
Sbjct: 31 GELVRSFNENITLEIAENEITVKRPNDTKEMKMLHGTTRALLANMVEGVSN 81


>5TF2-A nrPDB
          Length = 407

 Score = 27.3 bits (59), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 96  YVQLAHGQTFTFPDLFPEKDESPE--GSAADDLYSMLEEERQQRQSSDPRR 144
           YV+ AHG   T     PEK   PE  GS    L+S+  + R Q      RR
Sbjct: 355 YVREAHGIVVTDVAFLPEKGRGPELLGSHETALFSVAVDSRCQLHLLPSRR 405


>4TXK-A nrPDB
          Length = 615

 Score = 26.9 bits (58), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 125 DLYSMLEEERQQRQSSDP 142
           DLY M+++E  QR+S +P
Sbjct: 481 DLYDMMDKEHAQRKSDEP 498


>1VP4-A nrPDB
          Length = 425

 Score = 26.2 bits (56), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 6   VYPLYRLGGPQLRVFRTNFFIQLVRPGV 33
           V P++++GGP+ RV   N F +++ PG+
Sbjct: 240 VDPIFKIGGPE-RVVLLNTFSKVLAPGL 266


>2PFJ-A nrPDB
          Length = 149

 Score = 26.2 bits (56), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 65  VAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLF 111
           V A R+ ++   +K+ + + ++ +  ++KV YV  A   T+T PD  
Sbjct: 12  VGAFRSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYT-PDFL 57


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3J7Y-U nrPDB                                                          242   5e-65
4V19-X nrPDB                                                          222   5e-59
3J6B-P nrPDB                                                          186   3e-48
5MRF-P nrPDB                                                          182   5e-47
4CE4-X nrPDB                                                          100   2e-22
3J7Z-T nrPDB                                                           95   1e-20

Sequences not found previously or not previously below threshold:

6FU8-C nrPDB                                                           69   7e-13
2AAR-R nrPDB                                                           47   2e-06
4V97-BX nrPDB                                                          47   2e-06
5HKV-Q nrPDB                                                           38   0.002
4V4N-AT nrPDB                                                          37   0.004
3J3W-T nrPDB                                                           35   0.010
5IT7-XX nrPDB                                                          34   0.022
4V8P-BR nrPDB                                                          33   0.051
4V7H-BT nrPDB                                                          32   0.073
6HIX-AX nrPDB                                                          32   0.088
5APO-X nrPDB                                                           32   0.11 
6AZ3-V nrPDB                                                           32   0.11 
5TGM-N5 nrPDB                                                          32   0.12 
3JCS-V nrPDB                                                           32   0.13 
5T5H-X nrPDB                                                           32   0.13 
5T2A-V nrPDB                                                           32   0.13 
5T2C-R nrPDB                                                           31   0.24 
4V8M-BX nrPDB                                                          30   0.31 
3JAH-X nrPDB                                                           30   0.33 
3ISY-A nrPDB                                                           28   2.2  
4FMK-A nrPDB                                                           27   2.4  
6GAZ-AO nrPDB                                                          26   7.1  

>3J7Y-U nrPDB
          Length = 153

 Score =  242 bits (617), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 60
           MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
Sbjct: 1   MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 60

Query: 61  YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG 120
           YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
Sbjct: 61  YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG 120

Query: 121 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL 153
           SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
Sbjct: 121 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL 153


>4V19-X nrPDB
          Length = 150

 Score =  222 bits (566), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 122/154 (79%), Positives = 137/154 (88%), Gaps = 5/154 (3%)

Query: 1   MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 60
           MARNV+YPLY+LG PQLRVFRTNFFIQLVRPG AQPEDTVQFRIPMEMTRVDLRNYLE I
Sbjct: 1   MARNVLYPLYQLGNPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERI 60

Query: 61  YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG 120
           YNVPVAAVRTRVQ+GSN+RRDHRN+RIKKPDYKVAYVQLA GQTFTFPDLFPE+    +G
Sbjct: 61  YNVPVAAVRTRVQYGSNRRRDHRNIRIKKPDYKVAYVQLALGQTFTFPDLFPER----KG 116

Query: 121 SAAD-DLYSMLEEERQQRQSSDPRRGGVPSWFGL 153
           ++ D D+   + E+++Q+ S DPRRGGVP WFGL
Sbjct: 117 ASVDVDVRDQVLEDQRQKHSPDPRRGGVPGWFGL 150


>3J6B-P nrPDB
          Length = 263

 Score =  186 bits (472), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 10  YRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVR 69
           +++GG   +V+     I L+RP         +F +P    ++DLR+YL  IY +    + 
Sbjct: 77  FKVGGN--KVYFPKARIILLRPNAKHTPYQAKFIVPKSFNKLDLRDYLYHIYGLRAMNIT 134

Query: 70  TRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAAD----D 125
           T++ HG   R + +  R ++P  K   +++        P ++PE+    E S  D    D
Sbjct: 135 TQLLHGKFNRMNLQTTRFREPQIKKMTIEMEE------PFIWPEEPRPDENSFWDSTTPD 188

Query: 126 LYSMLEEERQQRQSSDPRRGGV 147
                 EER     SD  + G 
Sbjct: 189 NMEKYREERLNCLGSDANKPGT 210


>5MRF-P nrPDB
          Length = 207

 Score =  182 bits (462), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 10  YRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVR 69
           +++GG   +V+     I L+RP         +F +P    ++DLR+YL  IY +    + 
Sbjct: 23  FKVGGN--KVYFPKARIILLRPNAKHTPYQAKFIVPKSFNKLDLRDYLYHIYGLRAMNIT 80

Query: 70  TRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAAD----D 125
           T++ HG   R + +  R ++P  K   +++        P ++PE+    E S  D    D
Sbjct: 81  TQLLHGKFNRMNLQTTRFREPQIKKMTIEMEE------PFIWPEEPRPDENSFWDSTTPD 134

Query: 126 LYSMLEEERQQRQSSDPRRGGV 147
                 EER     SD  + G 
Sbjct: 135 NMEKYREERLNCLGSDANKPGT 156


>4CE4-X nrPDB
          Length = 87

 Score =  100 bits (250), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/68 (92%), Positives = 66/68 (97%)

Query: 36  PEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVA 95
           PEDTVQFRIPMEMTRVDLRNYLE IYNVPVAAVRTRVQ+GSN+RRDHRN+RIKKPDYKVA
Sbjct: 15  PEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQYGSNRRRDHRNIRIKKPDYKVA 74

Query: 96  YVQLAHGQ 103
           YVQLA GQ
Sbjct: 75  YVQLALGQ 82


>3J7Z-T nrPDB
          Length = 100

 Score = 94.8 bits (234), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 33  VAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDY 92
             +  +T+  ++  + T+ +++  ++ ++ V V  V T V  G  KR   R  R  + D+
Sbjct: 23  AMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGR--RSDW 80

Query: 93  KVAYVQLAHGQTFTF 107
           K AYV L  GQ   F
Sbjct: 81  KKAYVTLKEGQNLDF 95


>6FU8-C nrPDB
          Length = 82

 Score = 69.4 bits (168), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 13/73 (17%)

Query: 33  VAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDY 92
             +  +T+  ++  + T+ +++  ++ ++ V V  V T V               ++ D+
Sbjct: 23  AMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVK-------------RRSDW 69

Query: 93  KVAYVQLAHGQTF 105
           K AYV L  GQ  
Sbjct: 70  KKAYVTLKEGQNL 82


>2AAR-R nrPDB
          Length = 95

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 27  QLVRPGVAQPEDTVQ------FRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRR 80
            L  P +++   +        F +  + T+ ++++ ++  + V V  + T    G  KR 
Sbjct: 6   ILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRV 65

Query: 81  DHRNVRIKKPDYKVAYVQLAHGQTFT 106
                +  + D K A V+LA GQ+  
Sbjct: 66  GRFIGQ--RNDRKKAIVRLAEGQSIE 89


>4V97-BX nrPDB
          Length = 96

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 32  GVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPD 91
           G A+ + T  F +  + T+ +++N +E  + V V  V T    G  KR        K+PD
Sbjct: 20  GFAEGKYT--FWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLG--KRPD 75

Query: 92  YKVAYVQLAHGQTFT 106
            K A VQ+A GQ   
Sbjct: 76  RKKAIVQVAPGQKIE 90


>5HKV-Q nrPDB
          Length = 91

 Score = 37.8 bits (86), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 23  NFFIQLVRPGVAQP------EDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGS 76
                L RP + +       ED   F +   + +  ++  +E I+NV VA+V        
Sbjct: 2   EARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKPK 61

Query: 77  NKRRDHRNVRIKKPDYKVAYVQLAHGQTFTF 107
            KR         K   + A V L  G    F
Sbjct: 62  KKRMGRYQGYTNKR--RKAIVTLKEGSIDLF 90


>4V4N-AT nrPDB
          Length = 84

 Score = 36.6 bits (83), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIK-KPDYK 93
           + E+ + F +    T+ D++  +E I+NV V  V T +       R  +   +K KP+Y 
Sbjct: 19  EKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-----RGEKKAYVKLKPEYS 73

Query: 94  VAYVQLAHG 102
            + V    G
Sbjct: 74  ASEVAARLG 82


>3J3W-T nrPDB
          Length = 95

 Score = 35.5 bits (80), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 36 PEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVA 95
           E    F + +   + ++++ +E I+ V V  V      G +KR         +   + A
Sbjct: 22 TEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRR--RKA 79

Query: 96 YVQL 99
           V+L
Sbjct: 80 IVKL 83


>5IT7-XX nrPDB
          Length = 121

 Score = 34.3 bits (77), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 26/51 (50%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNV 85
           +  +T+ F++ ++  +  ++  ++ +Y V V +V T V+    K+   R  
Sbjct: 56  EDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRPNGTKKAYVRLT 106


>4V8P-BR nrPDB
          Length = 150

 Score = 33.2 bits (74), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTR 71
           + E+T+ F +    T+  +++  E +YNV V +V T 
Sbjct: 85  EDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTL 121


>4V7H-BT nrPDB
          Length = 80

 Score = 32.4 bits (72), Expect = 0.073,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 35 QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNV 85
          +  + + F++ M+  +  ++  ++ +Y V V  V T V+    K+   R  
Sbjct: 18 EDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLT 68


>6HIX-AX nrPDB
          Length = 246

 Score = 32.4 bits (72), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 41  QFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLA 100
            F+IP  M++V+L NYL+ IY +              + ++         DYKVA V+L 
Sbjct: 160 VFQIPCSMSKVELVNYLKNIYGIDNVVRVEVRNRRGRRYKNEVGEIKMMDDYKVAVVELD 219

Query: 101 HGQTFTFPDLFPEKDESP 118
              +     +   +D S 
Sbjct: 220 TPVSVELKQIKGTEDTSD 237


>5APO-X nrPDB
          Length = 142

 Score = 32.0 bits (71), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNV 85
           +  + + F++ M+  +  ++  ++ +Y V V  V T V+    K+   R  
Sbjct: 77  EDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLT 127


>6AZ3-V nrPDB
          Length = 118

 Score = 32.0 bits (71), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 17/67 (25%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPD-YK 93
           +  +T+ F +     + +++  +  +Y V    V T +                +PD  K
Sbjct: 54  EENNTLTFIVDSRANKTEIKKAMRKLYQVKAVKVNTLI----------------RPDGLK 97

Query: 94  VAYVQLA 100
            AY++L+
Sbjct: 98  KAYIRLS 104


>5TGM-N5 nrPDB
          Length = 121

 Score = 32.0 bits (71), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNV 85
           +  + + F++ M+  +  ++  ++ +Y V V  V T V+    K+   R  
Sbjct: 56  EDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLT 106


>3JCS-V nrPDB
          Length = 145

 Score = 31.6 bits (70), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 17/67 (25%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPD-YK 93
           +  +T+ F +     + +++  +  +Y V    V T +                +PD  K
Sbjct: 80  EENNTLTFIVDSRANKTEIKKAMRKLYQVKAVKVNTLI----------------RPDGLK 123

Query: 94  VAYVQLA 100
            AY++L+
Sbjct: 124 KAYIRLS 130


>5T5H-X nrPDB
          Length = 116

 Score = 31.6 bits (70), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 17/67 (25%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPD-YK 93
           +  +T+ F +     + +++  +  +Y V    V T +                +PD  K
Sbjct: 52  EENNTLTFIVDSNANKTEIKKAMRKLYQVKAVKVNTLI----------------RPDGLK 95

Query: 94  VAYVQLA 100
            AY++L+
Sbjct: 96  KAYIRLS 102


>5T2A-V nrPDB
          Length = 145

 Score = 31.6 bits (70), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 17/67 (25%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPD-YK 93
           +  +T+ F +     + +++  +  +Y V    V T +                +PD  K
Sbjct: 80  EENNTLTFIVDARANKTEIKKAIRKLYQVKAVKVNTLI----------------RPDGLK 123

Query: 94  VAYVQLA 100
            AY++L+
Sbjct: 124 KAYIRLS 130


>5T2C-R nrPDB
          Length = 156

 Score = 30.9 bits (68), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 17/67 (25%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPD-YK 93
           +  +T+ F + ++  +  ++  ++ +Y++ VA V T +                +PD  K
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLI----------------RPDGEK 134

Query: 94  VAYVQLA 100
            AYV+LA
Sbjct: 135 KAYVRLA 141


>4V8M-BX nrPDB
          Length = 164

 Score = 30.5 bits (67), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 17/67 (25%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPD-YK 93
           +  +T+ F +     + +++  +  +Y V    V T +                +PD  K
Sbjct: 99  EENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLI----------------RPDGLK 142

Query: 94  VAYVQLA 100
            AY++L+
Sbjct: 143 KAYIRLS 149


>3JAH-X nrPDB
          Length = 119

 Score = 30.5 bits (67), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 35  QPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKV 94
           +  +T+ F + ++  +  ++  ++ +Y++ VA V T ++    K+   R      PDY  
Sbjct: 54  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLA----PDYDA 109

Query: 95  AYVQLAHG 102
             V    G
Sbjct: 110 LDVANKIG 117


>3ISY-A nrPDB
          Length = 120

 Score = 27.8 bits (60), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 71  RVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDES 117
            V + S  +  +R  + K        + L  G+T+ F D++ E  E 
Sbjct: 46  LVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEP 92


>4FMK-A nrPDB
          Length = 225

 Score = 27.4 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 11 RLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66
          RL G  +  F  +F +    P     +D + F      T  DLR+       + V 
Sbjct: 40 RLDGTVVAAFHPSFGVDF--PNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVE 93


>6GAZ-AO nrPDB
          Length = 239

 Score = 25.9 bits (55), Expect = 7.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 25  FIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRN 84
            +QL+   +  PEDT      +    V +RNY E +          R    S  +R    
Sbjct: 109 KMQLMNKVLENPEDTSSLEARIVALTVKIRNYEEHMQKHRKDKAHKRFLLMSIDQRKKML 168

Query: 85  VRIKKPDYKV-AYVQLAHGQTFTFP 108
             +++ +Y V   +    G  +TFP
Sbjct: 169 KNLRETNYAVFEKICKELGIEYTFP 193


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.305    0.128    0.339 

Lambda     K      H
   0.267   0.0386    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,331,689
Number of Sequences: 36641
Number of extensions: 178544
Number of successful extensions: 469
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 52
length of query: 153
length of database: 10,336,785
effective HSP length: 89
effective length of query: 64
effective length of database: 7,075,736
effective search space: 452847104
effective search space used: 452847104
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 54 (25.5 bits)