BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q15633
(366 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5ZAK-B nrPDB 748 0.0
5N8L-A nrPDB 436 e-123
2CPN-A nrPDB 160 1e-39
3LLH-A nrPDB 155 3e-38
4WYQ-B nrPDB 153 1e-37
3ADL-A nrPDB 149 1e-36
1DI2-A nrPDB 108 5e-24
2DIX-A nrPDB 88 7e-18
2NUG-A nrPDB 45 7e-05
5DV7-C nrPDB 40 0.002
1X47-A nrPDB 39 0.004
2YT4-A nrPDB 39 0.004
2A11-A nrPDB 35 0.062
2L2N-A nrPDB 34 0.12
3ADI-A nrPDB 32 0.31
3N3W-A nrPDB 32 0.47
5LLT-A nrPDB 31 0.67
1O0W-A nrPDB 31 0.75
3DAP-A nrPDB 28 5.8
3ADJ-A nrPDB 28 5.9
>5ZAK-B nrPDB
Length = 366
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP 60
MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
Sbjct: 1 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP 60
Query: 61 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE 120
NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
Sbjct: 61 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE 120
Query: 121 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV 180
DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
Sbjct: 121 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV 180
Query: 181 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP 240
TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
Sbjct: 181 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP 240
Query: 241 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE 300
DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
Sbjct: 241 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE 300
Query: 301 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK 360
LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
Sbjct: 301 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK 360
Query: 361 IMAGSK 366
IMAGSK
Sbjct: 361 IMAGSK 366
>5N8L-A nrPDB
Length = 215
Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/215 (99%), Positives = 213/215 (99%)
Query: 13 GCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS 72
G LPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS
Sbjct: 1 GGSLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS 60
Query: 73 CTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAAT 132
CTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAAT
Sbjct: 61 CTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAAT 120
Query: 133 PVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF 192
PVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF
Sbjct: 121 PVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF 180
Query: 193 TMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHT 227
TMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHT
Sbjct: 181 TMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHT 215
>2CPN-A nrPDB
Length = 89
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 150 PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS 209
PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS
Sbjct: 8 PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS 67
Query: 210 KKLAKRNAAAKMLLRV 225
KKLAKRNAAAKMLLRV
Sbjct: 68 KKLAKRNAAAKMLLRV 83
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 30 TPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAA 88
P+ LQE + G + P Y + + G AH+ FT V G G SKK AK AA
Sbjct: 17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 76
Query: 89 EVALKHLKGGS 99
L + G S
Sbjct: 77 AKMLLRVSGPS 87
>3LLH-A nrPDB
Length = 90
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/89 (95%), Positives = 85/89 (95%)
Query: 17 PSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ 76
P MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ
Sbjct: 2 PLGSHMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ 61
Query: 77 GPSKKAAKHKAAEVALKHLKGGSMLEPAL 105
GPSKKAAKHKAAEVALKHLKGGSMLEPAL
Sbjct: 62 GPSKKAAKHKAAEVALKHLKGGSMLEPAL 90
>4WYQ-B nrPDB
Length = 75
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 289 ALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAAR 348
ALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAAR
Sbjct: 1 ALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAAR 60
Query: 349 GEAARRALQYLKIMA 363
GEAARRALQYLKIMA
Sbjct: 61 GEAARRALQYLKIMA 75
>3ADL-A nrPDB
Length = 88
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/73 (97%), Positives = 72/73 (98%)
Query: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 218
+ VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA
Sbjct: 16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 75
Query: 219 AKMLLRVHTVPLD 231
AKMLLRVHTVPLD
Sbjct: 76 AKMLLRVHTVPLD 88
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 28 GKTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 86
G + LQE + G + P Y + + G AH+ FT V G G SKK AK
Sbjct: 14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 73
Query: 87 AA 88
AA
Sbjct: 74 AA 75
>1DI2-A nrPDB
Length = 69
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%)
Query: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAA 219
PVG+LQEL VQKGWRLPEYTV QESGP H++EFT+TCRVE F+E GSGTSK++AKR AA
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 220 KMLLRVHT 227
K+L + T
Sbjct: 62 KLLTKFKT 69
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 31 PISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAE 89
P+ LQE + G + P Y + + G H+ FT V TG G SK+ AK AAE
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 90 VALKHLK 96
L K
Sbjct: 62 KLLTKFK 68
>2DIX-A nrPDB
Length = 84
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 50/69 (72%)
Query: 28 GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKA 87
GKTPI +L EYG + PVY+ +++ Q H P FTFRVTVGD +CTG+G SKK AKH+A
Sbjct: 7 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 66
Query: 88 AEVALKHLK 96
AE A+ LK
Sbjct: 67 AEAAINILK 75
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 218
P+ L E + K +P Y + H FT V G GTSKKLAK AA
Sbjct: 10 PIQVLHEYGM-KTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAA 67
>2NUG-A nrPDB
Length = 221
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 164 LQELVVQKGWR-LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 222
LQE + QK W+ PEY + GP H+K+F + +++ + +G G SKK A++ AA +++
Sbjct: 156 LQE-ITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELI 214
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 33 SLLQEY-GTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVA 91
++LQE R + P Y L+ EG H+ F + + G+G SKK A+ +AAE
Sbjct: 154 TILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEEL 213
Query: 92 LKHL 95
+K L
Sbjct: 214 IKLL 217
>5DV7-C nrPDB
Length = 700
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 21/169 (12%)
Query: 48 YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPAL-- 105
Y L+ G H P FT V V ++ GPSKK AK VA+K L+ + A
Sbjct: 415 YKLISQTGPVHAPIFTMSVEVDGSNFEASGPSKKTAK---LHVAVKVLQDMGLPTGAEGR 471
Query: 106 -----EDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNP 160
EDS+ S ++ PV A + PS V E Q P+ + + NP
Sbjct: 472 DSSKGEDSAEESDGKPAIVAPPPVVEAVSN----PSSVFPSDATTE-QGPILTKHGK-NP 525
Query: 161 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS 209
V L E ++G + Y + E+G +H K F M V+ G+G++
Sbjct: 526 VMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSN 569
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 177 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 222
+Y + ++GP H FTM+ V+ SG SKK AK + A K+L
Sbjct: 414 QYKLISQTGPVHAPIFTMSVEVDGSNFEASGPSKKTAKLHVAVKVL 459
>1X47-A nrPDB
Length = 98
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 23 LAANP-GKTPISLLQEYGTRIGKT-PVYDLLKAEGQAHQPNFTFRVTV-GDTSCTGQGPS 79
NP GK+ + +L EY R+ K PVY+ + E + F VT+ G T +G S
Sbjct: 9 FVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASS 66
Query: 80 KKAAKHKAAEVALKHL 95
KK AK+KAA L+ L
Sbjct: 67 KKLAKNKAARATLEIL 82
>2YT4-A nrPDB
Length = 232
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 17 PSIEQMLAANPGKTPISLLQEYGTRIGKT-PVYDLLKAEGQAHQPNFTFRVTV-GDTSCT 74
P+ ++ + GK+ + +L EY R+ K PVY+ + E + +P F VT+ G T +
Sbjct: 10 PTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGS 67
Query: 75 GQGPSKKAAKHKAAEVALKHL 95
G SKK AK+KAA L+ L
Sbjct: 68 GTASSKKLAKNKAARATLEIL 88
>2A11-A nrPDB
Length = 242
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 163 ALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSK 210
+LQEL +G P Y VT +GP H KEFT V E GSG +
Sbjct: 167 SLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDS-EYGSGVGR 212
>2L2N-A nrPDB
Length = 103
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 33 SLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGP---SKKAAKHKAA 88
S LQEY + TPVY+++K EG +H+ F V + D P ++KAA+ AA
Sbjct: 21 SRLQEYAQKYKLPTPVYEIVK-EGPSHKSLFQSTVIL-DGVRYNSLPGFFNRKAAEQSAA 78
Query: 89 EVALKHLKGGSML 101
EVAL+ L S L
Sbjct: 79 EVALRELAKSSEL 91
>3ADI-A nrPDB
Length = 73
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 33 SLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGP---SKKAAKHKAA 88
S LQEY + TPVY+++K EG +H+ F V + D P ++KAA+ AA
Sbjct: 7 SRLQEYAQKYKLPTPVYEIVK-EGPSHKSLFQSTVIL-DGVRYNSLPGFFNRKAAEQSAA 64
Query: 89 EVALKHL 95
EVAL+ L
Sbjct: 65 EVALREL 71
>3N3W-A nrPDB
Length = 248
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 15 GLPSIEQMLAANPGKTPISLLQEYGT-RIGKTPVYDLLKAEGQAHQPNFTFRVTV-GDTS 72
P I+ + KT LQE +IG+TP Y+ ++A G H F + + G
Sbjct: 166 NFPQIDAKILIKDYKTK---LQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL 222
Query: 73 CTGQGPSKKAAKHKAAEVALKHL 95
SKK A+ AA++AL+ L
Sbjct: 223 ARAIAGSKKEAQQMAAKIALEKL 245
>5LLT-A nrPDB
Length = 213
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 45 TPVYDLLKAEGQAHQPNFTFRVTVG-DTSC 73
TP YDLLK + + H PN+TF +G D C
Sbjct: 86 TPTYDLLKTQKELH-PNYTFYFGLGSDLIC 114
>1O0W-A nrPDB
Length = 252
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 PVYDLLKAEGQAHQPNFTFRVTV-GDTSCTGQGPSKKAAKHKAAEVALKHL 95
P Y L++ E F V V G T TG+G +KK A+ +AA +A + L
Sbjct: 197 PEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 247
>3DAP-A nrPDB
Length = 320
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 18 SIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTF 64
S+E+++A P + + T KTPV+D+ + A + F
Sbjct: 17 SVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLF 63
>3ADJ-A nrPDB
Length = 76
Score = 28.1 bits (61), Expect = 5.9, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 33 SLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGP-SKKAAKHKAAEV 90
+LLQEY ++ P+Y K E FT V +G TG +KK A+ A
Sbjct: 8 NLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRT 67
Query: 91 AL 92
AL
Sbjct: 68 AL 69
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5ZAK-B nrPDB 690 0.0
5N8L-A nrPDB 368 e-102
5DV7-C nrPDB 192 2e-49
4WYQ-B nrPDB 161 4e-40
3LLH-A nrPDB 146 1e-35
2CPN-A nrPDB 131 4e-31
3ADL-A nrPDB 130 9e-31
2DIX-A nrPDB 117 7e-27
1DI2-A nrPDB 109 2e-24
2NUG-A nrPDB 86 2e-17
Sequences not found previously or not previously below threshold:
3P1X-A nrPDB 71 6e-13
2L33-A nrPDB 70 1e-12
2YT4-A nrPDB 61 1e-09
1O0W-A nrPDB 42 6e-04
3ADJ-A nrPDB 41 0.001
2L2N-A nrPDB 40 0.001
3N3W-A nrPDB 38 0.007
2A11-A nrPDB 37 0.014
3W4R-A nrPDB 35 0.043
5MRE-5 nrPDB 35 0.061
3J6B-5 nrPDB 35 0.061
5B16-A nrPDB 34 0.13
6NU3-c nrPDB 32 0.38
3WEC-A nrPDB 31 1.2
6AI2-A nrPDB 30 1.5
3PSP-A nrPDB 30 2.2
6HT9-B nrPDB 29 2.3
6GYB-c nrPDB 29 2.5
5VTM-X nrPDB 29 2.6
1U14-A nrPDB 29 3.0
3F0Y-A nrPDB 28 7.0
3O8E-A nrPDB 27 9.4
>5ZAK-B nrPDB
Length = 366
Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats.
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP 60
MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
Sbjct: 1 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP 60
Query: 61 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE 120
NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
Sbjct: 61 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE 120
Query: 121 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV 180
DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
Sbjct: 121 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV 180
Query: 181 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP 240
TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
Sbjct: 181 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP 240
Query: 241 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE 300
DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
Sbjct: 241 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE 300
Query: 301 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK 360
LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
Sbjct: 301 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK 360
Query: 361 IMAGSK 366
IMAGSK
Sbjct: 361 IMAGSK 366
>5N8L-A nrPDB
Length = 215
Score = 368 bits (945), Expect = e-102, Method: Composition-based stats.
Identities = 213/215 (99%), Positives = 213/215 (99%)
Query: 13 GCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS 72
G LPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS
Sbjct: 1 GGSLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS 60
Query: 73 CTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAAT 132
CTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAAT
Sbjct: 61 CTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAAT 120
Query: 133 PVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF 192
PVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF
Sbjct: 121 PVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF 180
Query: 193 TMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHT 227
TMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHT
Sbjct: 181 TMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHT 215
>5DV7-C nrPDB
Length = 700
Score = 192 bits (488), Expect = 2e-49, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 21/169 (12%)
Query: 48 YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPAL-- 105
Y L+ G H P FT V V ++ GPSKK AK VA+K L+ + A
Sbjct: 415 YKLISQTGPVHAPIFTMSVEVDGSNFEASGPSKKTAK---LHVAVKVLQDMGLPTGAEGR 471
Query: 106 -----EDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNP 160
EDS+ S ++ PV A + PS V E Q P+ + + NP
Sbjct: 472 DSSKGEDSAEESDGKPAIVAPPPVVEAVSN----PSSVFPSDATTE-QGPILTKHGK-NP 525
Query: 161 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS 209
V L E ++G + Y + E+G +H K F M V+ G+G++
Sbjct: 526 VMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSN 569
Score = 47.8 bits (112), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 113 PLDSSLPEDI----PVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSE----------C 158
PL S +P+ PV + PME +
Sbjct: 335 PLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKA 394
Query: 159 NPVGALQELVVQKGWRLP-EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNA 217
+P A+ L+ + +Y + ++GP H FTM+ V+ SG SKK AK +
Sbjct: 395 DPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNFEASGPSKKTAKLHV 454
Query: 218 AAKML 222
A K+L
Sbjct: 455 AVKVL 459
>4WYQ-B nrPDB
Length = 75
Score = 161 bits (407), Expect = 4e-40, Method: Composition-based stats.
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 289 ALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAAR 348
ALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAAR
Sbjct: 1 ALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAAR 60
Query: 349 GEAARRALQYLKIMA 363
GEAARRALQYLKIMA
Sbjct: 61 GEAARRALQYLKIMA 75
>3LLH-A nrPDB
Length = 90
Score = 146 bits (368), Expect = 1e-35, Method: Composition-based stats.
Identities = 85/89 (95%), Positives = 85/89 (95%)
Query: 17 PSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ 76
P MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ
Sbjct: 2 PLGSHMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ 61
Query: 77 GPSKKAAKHKAAEVALKHLKGGSMLEPAL 105
GPSKKAAKHKAAEVALKHLKGGSMLEPAL
Sbjct: 62 GPSKKAAKHKAAEVALKHLKGGSMLEPAL 90
Score = 31.7 bits (70), Expect = 0.47, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAA 219
P+ LQE + G + P Y + + G AH+ FT V G G SKK AK AA
Sbjct: 16 PISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAE 74
Query: 220 KMLLRVH 226
L +
Sbjct: 75 VALKHLK 81
>2CPN-A nrPDB
Length = 89
Score = 131 bits (330), Expect = 4e-31, Method: Composition-based stats.
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 150 PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS 209
PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS
Sbjct: 8 PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS 67
Query: 210 KKLAKRNAAAKMLLRV 225
KKLAKRNAAAKMLLRV
Sbjct: 68 KKLAKRNAAAKMLLRV 83
Score = 40.5 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 31 PISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAA 88
P+ LQE + G + P Y + + G AH+ FT V G G SKK AK AA
Sbjct: 18 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 76
>3ADL-A nrPDB
Length = 88
Score = 130 bits (327), Expect = 9e-31, Method: Composition-based stats.
Identities = 71/73 (97%), Positives = 72/73 (98%)
Query: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 218
+ VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA
Sbjct: 16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 75
Query: 219 AKMLLRVHTVPLD 231
AKMLLRVHTVPLD
Sbjct: 76 AKMLLRVHTVPLD 88
Score = 40.1 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 28 GKTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 86
G + LQE + G + P Y + + G AH+ FT V G G SKK AK
Sbjct: 14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 73
Query: 87 AA 88
AA
Sbjct: 74 AA 75
>2DIX-A nrPDB
Length = 84
Score = 117 bits (293), Expect = 7e-27, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%)
Query: 24 AANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAA 83
+ + GKTPI +L EYG + PVY+ +++ Q H P FTFRVTVGD +CTG+G SKK A
Sbjct: 3 SGSSGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLA 62
Query: 84 KHKAAEVALKHLK 96
KH+AAE A+ LK
Sbjct: 63 KHRAAEAAINILK 75
Score = 34.8 bits (78), Expect = 0.066, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAA 219
P+ L E ++ +P Y + H FT V G GTSKKLAK AA
Sbjct: 10 PIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAE 68
Query: 220 KML 222
+
Sbjct: 69 AAI 71
>1DI2-A nrPDB
Length = 69
Score = 109 bits (272), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/68 (72%), Positives = 58/68 (85%)
Query: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAA 219
PVG+LQEL VQKGWRLPEYTV QESGP H++EFT+TCRVE F+E GSGTSK++AKR AA
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 220 KMLLRVHT 227
K+L + T
Sbjct: 62 KLLTKFKT 69
Score = 41.3 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 31 PISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAE 89
P+ LQE + G + P Y + + G H+ FT V TG G SK+ AK AAE
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 90 VALKHLK 96
L K
Sbjct: 62 KLLTKFK 68
>2NUG-A nrPDB
Length = 221
Score = 86.0 bits (211), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 164 LQELVVQKGWR-LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 222
LQE + QK W+ PEY + GP H+K+F + +++ + +G G SKK A++ AA +++
Sbjct: 156 LQE-ITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELI 214
Score = 44.4 bits (103), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 33 SLLQEYGT-RIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVA 91
++LQE R + P Y L+ EG H+ F + + G+G SKK A+ +AAE
Sbjct: 154 TILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEEL 213
Query: 92 LKHLK 96
+K L+
Sbjct: 214 IKLLE 218
>3P1X-A nrPDB
Length = 75
Score = 71.3 bits (173), Expect = 6e-13, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 151 VSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS 209
+ + + NPV L E ++G + Y + E+G +H K F M V+ G+G++
Sbjct: 1 ILTKHGK-NPVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSN 53
Score = 35.9 bits (81), Expect = 0.029, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 28 GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPS 79
GK P+ L E + Y+L+ G +H F V V G G +
Sbjct: 6 GKNPVMELNEKRRGLK----YELISETGGSHDKRFVMEVEVDGQKFQGAGSN 53
>2L33-A nrPDB
Length = 91
Score = 70.2 bits (170), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 151 VSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS 209
+ + + NPV L E ++G + Y + E+G +H K F M V+ G+G++
Sbjct: 11 MLTKHGK-NPVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSN 63
Score = 35.9 bits (81), Expect = 0.029, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 28 GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPS 79
GK P+ L E + Y+L+ G +H F V V G G +
Sbjct: 16 GKNPVMELNEKRRGLK----YELISETGGSHDKRFVMEVEVDGQKFQGAGSN 63
>2YT4-A nrPDB
Length = 232
Score = 60.6 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 29/205 (14%)
Query: 26 NP-GKTPISLLQEYGTRIGKT-PVYDLLKAEGQAHQPNFTFRVTVGDTSC-TGQGPSKKA 82
NP GK+ + +L EY R+ K PVY+ + E + F VT+ + +G SKK
Sbjct: 18 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKL 75
Query: 83 AKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRS 142
AK+KAA L+ L + ++ +S P DS E++ F + + S
Sbjct: 76 AKNKAARATLEIL-----IPDFVKQTSEEKPKDS---EELEYFNHIS---------IEDS 118
Query: 143 PPMELQPPVSPQQSECNPVGALQELVVQK-GWRLPEYTVTQESGPAHRKEFTMTCRVERF 201
EL + + +P L E + + G G + E+ M C
Sbjct: 119 RVYEL----TSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKHTV 174
Query: 202 IEIGSGTSKKLAKRNAAAKMLLRVH 226
G +K++ K+ A+ K+L +H
Sbjct: 175 R--GWCKNKRVGKQLASQKILQLLH 197
>1O0W-A nrPDB
Length = 252
Score = 41.7 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 163 ALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAA--- 218
ALQE+V + PEY + + + F + RV I G G +KK A++ AA
Sbjct: 184 ALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIA 243
Query: 219 -AKML 222
K+L
Sbjct: 244 YEKLL 248
>3ADJ-A nrPDB
Length = 76
Score = 40.9 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 33 SLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGP-SKKAAKHKAAEV 90
+LLQEY ++ P+Y K E FT V +G TG +KK A+ A
Sbjct: 8 NLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRT 67
Query: 91 ALKHLK 96
AL ++
Sbjct: 68 ALLAIQ 73
Score = 32.8 bits (73), Expect = 0.26, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 155 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGT-SKKLA 213
C + LQE + + +P Y + +FT T + G+ T +KK A
Sbjct: 3 HGLCKNL--LQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDA 60
Query: 214 KRNAAAKMLLRVHT 227
+ +A LL + +
Sbjct: 61 EISAGRTALLAIQS 74
>2L2N-A nrPDB
Length = 103
Score = 40.1 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 33 SLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGP--SKKAAKHKAAE 89
S LQEY + TPVY+++K EG +H+ F V + ++KAA+ AAE
Sbjct: 21 SRLQEYAQKYKLPTPVYEIVK-EGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 79
Query: 90 VALKHLKGGSMLE 102
VAL+ L S L
Sbjct: 80 VALRELAKSSELS 92
>3N3W-A nrPDB
Length = 248
Score = 37.8 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 15 GLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCT 74
P I+ + KT + + + +IG+TP Y+ ++A G H F + +
Sbjct: 166 NFPQIDAKILIKDYKTKLQEITQ--GKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELA 223
Query: 75 -GQGPSKKAAKHKAAEVALKHL 95
SKK A+ AA++AL+ L
Sbjct: 224 RAIAGSKKEAQQMAAKIALEKL 245
Score = 36.3 bits (82), Expect = 0.022, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 164 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS-GTSKKLAKRNAAAKML 222
LQE+ K + P+Y + GP H K+F + ++ + SKK A++ AA L
Sbjct: 183 LQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL 242
Query: 223 LRV 225
++
Sbjct: 243 EKL 245
>2A11-A nrPDB
Length = 242
Score = 37.1 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 163 ALQELVVQKGWRLPEYTVTQESGPAHRKEFT-MTCRVERFIEIGSGTSK 210
+LQEL +G P Y VT +GP H KEFT + ++ G G SK
Sbjct: 167 SLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSK 214
>3W4R-A nrPDB
Length = 554
Score = 35.1 bits (79), Expect = 0.043, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 80 KKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVL 139
K KH +A G + P S +P D S + IP T + AT PS
Sbjct: 391 KLLHKHMSAYTVPPPRSGNTTPTPEWARPPS-TPSDPSEGDPIPTTTTSKPATSKPST-- 447
Query: 140 TRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQES 184
T P +P P+ + P A ++ + PE + E+
Sbjct: 448 TSQPATTSRP--EPKPTTSLPTPAPTASTTEEEAQQPEVELPAEN 490
>5MRE-5 nrPDB
Length = 324
Score = 34.8 bits (78), Expect = 0.061, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS--GTSKKLAKRN 216
P L L ++G P + ESG + + +G G+S K AK
Sbjct: 236 QPTRELAMLCRREGLEKPVSKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKAR 295
Query: 217 AAAKMLLR 224
AA L++
Sbjct: 296 AATDALMK 303
>3J6B-5 nrPDB
Length = 390
Score = 34.8 bits (78), Expect = 0.061, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS--GTSKKLAKRN 216
P L L ++G P + ESG + + +G G+S K AK
Sbjct: 302 QPTRELAMLCRREGLEKPVSKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKAR 361
Query: 217 AAAKMLLR 224
AA L++
Sbjct: 362 AATDALMK 369
>5B16-A nrPDB
Length = 986
Score = 33.6 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 14 CGLPSIEQMLAANPGKTPISLLQEYGTRIG------KTPVYDLLKAEGQAHQPNFTFRVT 67
C P +++ + P S LQ+ + P+Y L+ G +H +T V
Sbjct: 857 CFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVY 916
Query: 68 VGD--TSCTGQGPSKKAAKHKAAEVALK 93
C G+GPS + A+ AA AL+
Sbjct: 917 FKGERIGC-GKGPSIQQAEMGAAMDALE 943
Score = 32.8 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 175 LPEYTVTQESGPAHRKEFTMTCRVERFIE-IGSGTSKKLAKRNAAAKMLLRVH 226
+P Y Q GP+H + +T+ + G G S + A+ AA L + +
Sbjct: 894 IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 946
>6NU3-c nrPDB
Length = 332
Score = 32.1 bits (71), Expect = 0.38, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 159 NPVGALQELVVQKGWRLPEYTVTQESGP--AHRKEFTMTCRVERFIEIGSGTSKKLAKRN 216
NP+G L E + ++ PE +T++SG A F ++ I G G + +A+
Sbjct: 236 NPMGLLVEELKKRNVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEE 295
Query: 217 AAAKMLLRVHTVPLDARDGNEVEPDD 242
AA L +++ + R N +P +
Sbjct: 296 AARVALRKLYGFTENRRPWNYSKPKE 321
>3WEC-A nrPDB
Length = 419
Score = 30.5 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
Query: 46 PVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKG-GSMLEPA 104
PVY L+ E H+ + TSC S+ K A HL P
Sbjct: 28 PVYARLRTELPIHRSALGAWIVADYTSCDKVLRSRLFGKDFANSTFFDHLTSMMGEDMPP 87
Query: 105 LEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQS 156
+ D P T S TRS + V S
Sbjct: 88 FLGLGIDGDARPFMLTDPPEHTRLRGLV---SDAFTRSTTTSMDDIVLSAAS 136
>6AI2-A nrPDB
Length = 369
Score = 30.1 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 21/139 (15%)
Query: 27 PGKTPISLLQEY--GTRIGKTPVYDL--LKAEGQAHQP--------NFTFRVTVGDTSCT 74
PG ++ L + K P+ D+ + H P RV +G
Sbjct: 206 PGVVTLTTLHKVLQNLLAEKVPIRDMRTILETLAEHAPLQSDPHELTAVVRVALGRAITQ 265
Query: 75 GQGPSKKAAKHKAAEVAL-----KHLKGGSMLEPALED----SSSFSPLDSSLPEDIPVF 125
P + + + AL + L+GG LEP L D + + + PV
Sbjct: 266 QWFPGNEEVQVIGLDTALERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVL 325
Query: 126 TAAAAATPVPSVVLTRSPP 144
A P+ S L RS P
Sbjct: 326 LVNHALRPLLSRFLRRSLP 344
>3PSP-A nrPDB
Length = 425
Score = 29.7 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 14 CGLPSIEQMLAANPGK------TPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVT 67
+P M + G+ +P +LQ G + G+ V + +AHQ + +
Sbjct: 13 GLVPRGSHMASMTGGQQMGRGSSPYEILQSPGRKEGQIVVVKSPQGTIEAHQFSNSSWKK 72
Query: 68 VGDTSCTG-QGPSKK 81
VGD G G KK
Sbjct: 73 VGDVVGAGATGNDKK 87
>6HT9-B nrPDB
Length = 378
Score = 29.4 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 12/132 (9%)
Query: 72 SCTGQGPSKKAAKHKAAEVALKH-LKGGSMLEPALEDSSSFSPLDSSLP-EDIPVFTAAA 129
+CT + SK+ + L S LE A E + F+ S E + V A
Sbjct: 121 NCTLRPVSKRKTHTTCPDCPSPIDLSNPSALEAATESLAKFNSKSPSKKYELVKVTKAMN 180
Query: 130 AATPVPSV----VLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESG 185
P+ ++ +P + Q S Q S+ PVG Q VQ R + Q
Sbjct: 181 QWVSGPAYYVEYLIKEAPCTKSQASCSLQHSDSEPVGICQGSTVQSSLR--HVPLIQ--- 235
Query: 186 PAHRKEFTMTCR 197
K T+TC
Sbjct: 236 -PVEKSVTVTCE 246
>6GYB-c nrPDB
Length = 406
Score = 29.4 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 108 SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGAL 164
S+ +L E + +AA VP + + P + PV+ + NP G L
Sbjct: 142 SAPERQRGPTLLERRILAESAANGGGVPGQLGAQPAPTQEDGPVTLAKPISNPDGLL 198
>5VTM-X nrPDB
Length = 273
Score = 29.4 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 81 KAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLT 140
+A ++AA + K + +L+ + D P S+LPED P+ A+ PV + +
Sbjct: 131 EAPAYRAANRSFKDVSELRLLKLSEADYRRLLPFVSALPEDAPL-NVNTASVPVLAAMFE 189
Query: 141 RSP 143
P
Sbjct: 190 IDP 192
>1U14-A nrPDB
Length = 172
Score = 29.4 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 126 TAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVG 162
A +A P+P+V+L R E PV Q + + +G
Sbjct: 99 EARSATLPLPAVILDRVRQGEALGPVMSQYTGIDEIG 135
>3F0Y-A nrPDB
Length = 208
Score = 27.8 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 61 NFTFRVTVGDTSCTGQ----GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS 116
NF T + + T + + + L H G +M A+ ++ SF P +
Sbjct: 64 NFNMLTTYRNINFTAELFFDSAGNLLTSLSSLKTPLNHKSGQNMATGAITNAKSFMPSTT 123
Query: 117 SLP 119
+ P
Sbjct: 124 AYP 126
>3O8E-A nrPDB
Length = 213
Score = 27.4 bits (59), Expect = 9.4, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 61 NFTFRVTVGDTSCTGQ----GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS 116
NF T + + T + + + + L H G +M A+ ++ F P +
Sbjct: 69 NFNMLTTHRNINFTAELFFDSTGNLLTRLSSLKTPLNHKSGQNMATGAITNAKGFMPSTT 128
Query: 117 SLP 119
+ P
Sbjct: 129 AYP 131
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.306 0.125 0.344
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,470,920
Number of Sequences: 36641
Number of extensions: 518563
Number of successful extensions: 1202
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 110
length of query: 366
length of database: 10,336,785
effective HSP length: 98
effective length of query: 268
effective length of database: 6,745,967
effective search space: 1807919156
effective search space used: 1807919156
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 60 (27.8 bits)